Wall clock time and date at job start Sat Apr 11 2020 05:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.33000 * 119.99772 * 2 1 4 4 C 1.50698 * 120.00310 * 359.97438 * 3 2 1 5 5 C 1.47109 * 119.99840 * 179.97438 * 3 2 1 6 6 O 1.21616 * 119.99712 * 335.54056 * 5 3 2 7 7 N 1.34776 * 119.99652 * 155.53958 * 5 3 2 8 8 C 1.46916 * 120.63319 * 353.60528 * 7 5 3 9 9 C 1.53194 * 108.77393 * 233.58659 * 8 7 5 10 10 C 1.53036 * 109.31354 * 305.36190 * 9 8 7 11 11 O 1.42900 * 109.46433 * 301.36010 * 10 9 8 12 12 C 1.52998 * 109.45969 * 181.38363 * 10 9 8 13 13 N 1.46906 * 109.47237 * 185.00060 * 12 10 9 14 14 C 1.46898 * 111.00141 * 180.02562 * 13 12 10 15 15 C 1.50701 * 109.47073 * 180.02562 * 14 13 12 16 16 O 1.21297 * 119.99775 * 359.97438 * 15 14 13 17 17 N 1.34771 * 120.00025 * 180.02562 * 15 14 13 18 18 C 1.37098 * 119.99871 * 179.97438 * 17 15 14 19 19 H 1.08000 * 120.00038 * 359.97438 * 18 17 15 20 20 C 1.38955 * 120.00136 * 179.97438 * 18 17 15 21 21 N 1.31410 * 119.99400 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00276 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47116 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47230 * 119.99776 * 22 20 18 25 25 H 1.48503 * 109.47407 * 240.00062 * 22 20 18 26 26 C 1.53047 * 109.53612 * 61.36735 * 10 9 8 27 27 C 1.46930 * 120.62646 * 173.58043 * 7 5 3 28 28 H 1.08995 * 109.47795 * 300.00586 * 1 2 3 29 29 H 1.09012 * 109.47069 * 60.00282 * 1 2 3 30 30 H 1.09003 * 109.47294 * 179.97438 * 1 2 3 31 31 H 1.07999 * 120.00459 * 179.97438 * 2 1 3 32 32 H 1.08996 * 109.47032 * 277.12505 * 4 3 2 33 33 H 1.09004 * 109.46436 * 37.11951 * 4 3 2 34 34 H 1.09001 * 109.47216 * 157.11912 * 4 3 2 35 35 H 1.09002 * 109.59043 * 113.80233 * 8 7 5 36 36 H 1.09004 * 109.70674 * 353.44097 * 8 7 5 37 37 H 1.09004 * 109.50116 * 185.41411 * 9 8 7 38 38 H 1.09000 * 109.50040 * 65.32041 * 9 8 7 39 39 H 0.96698 * 114.00072 * 180.02562 * 11 10 9 40 40 H 1.08999 * 109.47845 * 305.00226 * 12 10 9 41 41 H 1.09001 * 109.47371 * 65.00612 * 12 10 9 42 42 H 1.00906 * 110.99793 * 56.04801 * 13 12 10 43 43 H 1.08997 * 109.47164 * 300.00013 * 14 13 12 44 44 H 1.08999 * 109.47281 * 60.00310 * 14 13 12 45 45 H 0.96999 * 120.00244 * 359.97438 * 17 15 14 46 46 H 0.97005 * 119.99764 * 180.02562 * 21 20 18 47 47 H 1.08996 * 109.49526 * 58.58599 * 26 10 9 48 48 H 1.08995 * 109.49354 * 178.68248 * 26 10 9 49 49 H 1.08995 * 109.58577 * 246.19801 * 27 7 5 50 50 H 1.08999 * 109.58714 * 6.62934 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 1.4184 2.4569 -0.0006 5 6 3.6430 1.1519 0.0006 6 8 4.2509 0.1932 0.4371 7 7 4.3170 2.2142 -0.4827 8 6 3.6035 3.3176 -1.1399 9 6 4.2250 3.5540 -2.5200 10 6 5.7302 3.7830 -2.3647 11 8 5.9553 4.9067 -1.5111 12 6 6.3489 4.0537 -3.7376 13 7 7.8085 4.1548 -3.6056 14 6 8.4380 4.4156 -4.9070 15 6 9.9317 4.5120 -4.7322 16 8 10.4234 4.3772 -3.6316 17 7 10.7210 4.7490 -5.7986 18 6 12.0799 4.8373 -5.6394 19 1 12.5177 4.7173 -4.6595 20 6 12.8938 5.0811 -6.7389 21 7 12.3609 5.2277 -7.9312 22 14 14.7452 5.2021 -6.5220 23 1 15.0901 5.0022 -5.0915 24 1 15.4089 4.1566 -7.3415 25 1 15.2085 6.5431 -6.9607 26 6 6.3764 2.5390 -1.7506 27 6 5.7793 2.2911 -0.3618 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 2.0470 -0.9353 0.0004 32 1 1.1268 2.7076 -1.0204 33 1 0.5269 2.3619 0.6193 34 1 2.0566 3.2451 0.3991 35 1 3.6951 4.2219 -0.5382 36 1 2.5506 3.0589 -1.2528 37 1 3.7691 4.4313 -2.9790 38 1 4.0528 2.6820 -3.1508 39 1 6.8896 5.1109 -1.3679 40 1 6.1011 3.2368 -4.4154 41 1 5.9546 4.9886 -4.1359 42 1 8.1913 3.3246 -3.1783 43 1 8.2046 3.6014 -5.5932 44 1 8.0581 5.3531 -5.3130 45 1 10.3278 4.8572 -6.6787 46 1 12.9291 5.3975 -8.6988 47 1 6.1840 1.6765 -2.3886 48 1 7.4517 2.6939 -1.6619 49 1 6.0482 3.1116 0.3033 50 1 6.1627 1.3526 0.0385 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733882248.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:01 Heat of formation + Delta-G solvation = -115.983368 kcal Electronic energy + Delta-G solvation = -29801.421598 eV Core-core repulsion = 25635.315491 eV Total energy + Delta-G solvation = -4166.106107 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.65899 -40.28984 -39.68504 -37.00767 -36.63736 -36.10179 -35.52467 -33.30015 -32.81875 -32.47035 -30.10244 -29.39712 -27.74229 -26.85330 -25.47947 -24.72792 -23.48000 -22.05548 -21.12842 -20.75750 -19.94274 -19.31440 -18.11038 -17.84002 -17.34423 -17.19084 -16.80829 -16.57488 -16.42380 -16.05050 -15.78551 -15.61212 -15.38974 -15.11445 -14.80402 -14.72702 -14.45297 -14.30606 -14.14809 -13.82996 -13.56901 -13.48463 -13.39001 -13.26781 -13.16641 -12.96206 -12.76809 -12.64001 -12.48111 -12.41981 -12.21149 -12.17388 -12.12659 -12.02891 -11.52685 -11.34813 -10.84938 -10.71735 -10.34867 -10.05425 -10.02983 -9.59582 -9.40571 -8.48438 -5.97084 0.42988 1.35542 1.41222 1.55172 1.95546 2.03375 2.15439 2.27747 2.85221 3.18950 3.29251 3.46527 3.53143 3.72619 3.80176 3.83513 3.98800 4.08660 4.24470 4.29080 4.30065 4.32408 4.42663 4.48609 4.52369 4.57967 4.63624 4.67287 4.70958 4.76050 4.79805 4.88406 4.90206 4.90939 4.96190 5.05994 5.10342 5.18006 5.29300 5.39871 5.45682 5.53664 5.68958 5.81305 6.04640 6.30309 6.41977 6.58035 6.83199 7.09807 7.11081 7.54523 8.09468 8.69100 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.030053 B = 0.001825 C = 0.001797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.463193 B =15338.701485 C =15581.418633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.074 4.074 3 C -0.204 4.204 4 C -0.118 4.118 5 C 0.542 3.458 6 O -0.600 6.600 7 N -0.600 5.600 8 C 0.083 3.917 9 C -0.120 4.120 10 C 0.146 3.854 11 O -0.560 6.560 12 C 0.036 3.964 13 N -0.680 5.680 14 C 0.066 3.934 15 C 0.437 3.563 16 O -0.622 6.622 17 N -0.573 5.573 18 C -0.334 4.334 19 H 0.079 0.921 20 C -0.013 4.013 21 N -0.920 5.920 22 Si 0.993 3.007 23 H -0.274 1.274 24 H -0.271 1.271 25 H -0.270 1.270 26 C -0.159 4.159 27 C 0.119 3.881 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.073 0.927 31 H 0.100 0.900 32 H 0.103 0.897 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.139 0.861 37 H 0.103 0.897 38 H 0.083 0.917 39 H 0.387 0.613 40 H 0.046 0.954 41 H 0.088 0.912 42 H 0.343 0.657 43 H 0.065 0.935 44 H 0.106 0.894 45 H 0.396 0.604 46 H 0.278 0.722 47 H 0.068 0.932 48 H 0.078 0.922 49 H 0.075 0.925 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.590 -4.366 9.579 30.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.094 4.094 3 C -0.206 4.206 4 C -0.174 4.174 5 C 0.334 3.666 6 O -0.483 6.483 7 N -0.331 5.331 8 C -0.038 4.038 9 C -0.158 4.158 10 C 0.105 3.895 11 O -0.367 6.367 12 C -0.093 4.093 13 N -0.313 5.313 14 C -0.067 4.067 15 C 0.225 3.775 16 O -0.509 6.509 17 N -0.210 5.210 18 C -0.464 4.464 19 H 0.097 0.903 20 C -0.212 4.212 21 N -0.561 5.561 22 Si 0.817 3.183 23 H -0.199 1.199 24 H -0.196 1.196 25 H -0.196 1.196 26 C -0.197 4.197 27 C -0.003 4.003 28 H 0.106 0.894 29 H 0.111 0.889 30 H 0.092 0.908 31 H 0.118 0.882 32 H 0.121 0.879 33 H 0.106 0.894 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.156 0.844 37 H 0.121 0.879 38 H 0.102 0.898 39 H 0.236 0.764 40 H 0.065 0.935 41 H 0.107 0.893 42 H 0.163 0.837 43 H 0.083 0.917 44 H 0.124 0.876 45 H 0.230 0.770 46 H 0.087 0.913 47 H 0.087 0.913 48 H 0.096 0.904 49 H 0.093 0.907 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -28.507 -4.206 10.528 30.678 hybrid contribution 2.170 -0.963 -0.949 2.557 sum -26.337 -5.169 9.578 28.497 Atomic orbital electron populations 1.21033 0.89166 1.04061 1.03898 1.23717 0.98260 0.96549 0.90867 1.21465 0.90685 0.98748 1.09748 1.21228 1.00157 0.92345 1.03635 1.19211 0.89392 0.81271 0.76704 1.90748 1.71400 1.35848 1.50337 1.48062 1.07206 1.20542 1.57262 1.22853 0.99287 0.89024 0.92603 1.21967 0.92034 1.03753 0.98042 1.21076 0.95627 0.84886 0.87929 1.86363 1.32168 1.49029 1.69142 1.22760 0.86895 1.02155 0.97535 1.60091 1.04252 1.45033 1.21954 1.21521 0.89993 1.03168 0.91977 1.20878 0.89947 0.82308 0.84416 1.90492 1.76997 1.56768 1.26628 1.41935 1.06524 1.63139 1.09424 1.19708 0.82914 1.48072 0.95684 0.90317 1.26033 1.04813 0.96233 0.94161 1.69675 1.38010 1.48876 0.99489 0.84872 0.76901 0.78329 0.78241 1.19860 1.19637 1.19559 1.22550 1.00993 0.99194 0.96998 1.21387 0.79824 1.01993 0.97144 0.89372 0.88929 0.90801 0.88188 0.87903 0.89419 0.91079 0.90377 0.84401 0.87887 0.89799 0.76356 0.93541 0.89344 0.83688 0.91724 0.87647 0.76972 0.91292 0.91329 0.90386 0.90676 0.91303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.75 9.00 71.23 0.64 -0.11 16 2 C -0.07 -1.04 9.81 24.52 0.24 -0.80 16 3 C -0.20 -3.19 5.65 -18.70 -0.11 -3.30 16 4 C -0.12 -0.88 7.36 71.24 0.52 -0.36 16 5 C 0.54 13.09 7.46 86.57 0.65 13.74 16 6 O -0.60 -19.98 15.90 -4.08 -0.06 -20.05 16 7 N -0.60 -12.35 2.97 -823.18 -2.45 -14.80 16 8 C 0.08 1.14 4.46 86.36 0.38 1.53 16 9 C -0.12 -1.67 5.11 30.67 0.16 -1.51 16 10 C 0.15 2.79 0.79 -10.77 -0.01 2.78 16 11 O -0.56 -12.03 11.70 -148.98 -1.74 -13.78 16 12 C 0.04 0.75 4.93 86.30 0.43 1.17 16 13 N -0.68 -19.62 5.64 -517.93 -2.92 -22.55 16 14 C 0.07 2.15 6.17 85.56 0.53 2.68 16 15 C 0.44 20.41 7.82 87.66 0.69 21.10 16 16 O -0.62 -33.87 15.78 -3.08 -0.05 -33.92 16 17 N -0.57 -29.16 5.29 -306.98 -1.62 -30.78 16 18 C -0.33 -18.95 9.68 84.04 0.81 -18.14 16 19 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 20 C -0.01 -0.67 5.50 84.93 0.47 -0.21 16 21 N -0.92 -49.39 13.05 21.66 0.28 -49.11 16 22 Si 0.99 42.94 29.55 68.60 2.03 44.97 16 23 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 24 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 25 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 26 C -0.16 -3.44 4.67 30.67 0.14 -3.30 16 27 C 0.12 2.77 6.20 86.36 0.54 3.31 16 28 H 0.09 0.36 7.42 -2.39 -0.02 0.34 16 29 H 0.09 0.28 8.10 -2.38 -0.02 0.26 16 30 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.10 1.84 7.70 -2.91 -0.02 1.82 16 32 H 0.10 0.30 6.80 -2.39 -0.02 0.28 16 33 H 0.09 0.39 6.79 -2.38 -0.02 0.37 16 34 H 0.07 0.61 6.20 -2.39 -0.01 0.60 16 35 H 0.08 1.13 7.68 -2.39 -0.02 1.11 16 36 H 0.14 1.18 3.14 -3.22 -0.01 1.16 16 37 H 0.10 1.12 8.14 -2.38 -0.02 1.10 16 38 H 0.08 1.09 8.14 -2.39 -0.02 1.08 16 39 H 0.39 8.70 8.66 -74.06 -0.64 8.06 16 40 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.34 10.65 6.28 -89.69 -0.56 10.08 16 43 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.11 3.11 8.14 -2.39 -0.02 3.09 16 45 H 0.40 19.12 7.90 -92.71 -0.73 18.39 16 46 H 0.28 13.92 8.31 -92.70 -0.77 13.15 16 47 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 48 H 0.08 1.87 6.44 -2.39 -0.02 1.86 16 49 H 0.08 1.71 7.81 -2.39 -0.02 1.70 16 50 H 0.07 1.89 7.00 -2.39 -0.02 1.88 16 Total: -1.00 -74.90 394.32 -1.41 -76.31 By element: Atomic # 1 Polarization: 46.07 SS G_CDS: -0.95 Total: 45.12 kcal Atomic # 6 Polarization: 12.51 SS G_CDS: 6.08 Total: 18.58 kcal Atomic # 7 Polarization: -110.53 SS G_CDS: -6.71 Total: -117.24 kcal Atomic # 8 Polarization: -65.89 SS G_CDS: -1.86 Total: -67.75 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -74.90 -1.41 -76.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733882248.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.671 kcal (2) G-P(sol) polarization free energy of solvation -74.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds