Wall clock time and date at job start Sat Apr 11 2020 05:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50702 * 120.00146 * 2 1 4 4 C 1.50698 * 119.99833 * 180.02562 * 2 1 3 5 5 C 1.53002 * 109.47169 * 95.00085 * 4 2 1 6 6 C 1.50700 * 109.46910 * 179.97438 * 5 4 2 7 7 O 1.21281 * 120.00449 * 0.02562 * 6 5 4 8 8 N 1.34783 * 119.99785 * 179.97438 * 6 5 4 9 9 C 1.46502 * 119.99826 * 175.06589 * 8 6 5 10 10 C 1.53001 * 112.93806 * 299.88327 * 9 8 6 11 11 C 1.52995 * 109.47385 * 294.28284 * 10 9 8 12 12 O 1.42894 * 109.47334 * 175.67902 * 11 10 9 13 13 C 1.53937 * 113.82968 * 71.54434 * 9 8 6 14 14 N 1.47962 * 86.17878 * 90.64953 * 13 9 8 15 15 C 1.46898 * 110.99986 * 137.58154 * 14 13 9 16 16 C 1.50700 * 109.47302 * 70.63672 * 15 14 13 17 17 O 1.21293 * 119.99662 * 0.02562 * 16 15 14 18 18 N 1.34776 * 120.00178 * 179.97438 * 16 15 14 19 19 C 1.37098 * 119.99928 * 180.02562 * 18 16 15 20 20 H 1.07998 * 120.00277 * 359.97438 * 19 18 16 21 21 C 1.38951 * 119.99929 * 180.02562 * 19 18 16 22 22 N 1.31410 * 119.99983 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 120.00054 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47312 * 89.99344 * 23 21 19 25 25 H 1.48494 * 109.46996 * 209.99528 * 23 21 19 26 26 H 1.48501 * 109.46917 * 329.99769 * 23 21 19 27 27 C 1.47959 * 90.76598 * 24.68851 * 14 13 9 28 28 H 1.08000 * 120.00265 * 179.97438 * 1 2 3 29 29 H 1.08006 * 119.99917 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.47608 * 269.99860 * 3 2 1 31 31 H 1.08993 * 109.47139 * 30.00147 * 3 2 1 32 32 H 1.09002 * 109.47009 * 150.00193 * 3 2 1 33 33 H 1.09001 * 109.47421 * 335.00008 * 4 2 1 34 34 H 1.09007 * 109.46901 * 215.00045 * 4 2 1 35 35 H 1.09000 * 109.47158 * 60.00625 * 5 4 2 36 36 H 1.08997 * 109.47033 * 299.99791 * 5 4 2 37 37 H 0.96995 * 120.00130 * 355.06348 * 8 6 5 38 38 H 1.09004 * 109.47021 * 54.28425 * 10 9 8 39 39 H 1.09001 * 109.47089 * 174.27927 * 10 9 8 40 40 H 1.08999 * 109.47024 * 295.68561 * 11 10 9 41 41 H 1.09004 * 109.47194 * 55.68089 * 11 10 9 42 42 H 0.96702 * 114.00360 * 180.02562 * 12 11 10 43 43 H 1.08996 * 113.75905 * 204.96489 * 13 9 8 44 44 H 1.08996 * 113.75941 * 336.33162 * 13 9 8 45 45 H 1.08997 * 109.47568 * 190.64103 * 15 14 13 46 46 H 1.09007 * 109.47267 * 310.64190 * 15 14 13 47 47 H 0.97003 * 120.00269 * 0.02562 * 18 16 15 48 48 H 0.97002 * 119.99977 * 180.02562 * 22 21 19 49 49 H 1.08999 * 113.76230 * 220.99263 * 27 14 13 50 50 H 1.09003 * 113.75903 * 89.62610 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0634 -1.3051 -0.0006 5 6 2.4273 -1.6833 -1.4378 6 6 3.1813 -2.9881 -1.4382 7 8 3.4051 -3.5596 -0.3922 8 7 3.6060 -3.5206 -2.6013 9 6 4.4313 -4.7310 -2.5946 10 6 5.7483 -4.5506 -1.8372 11 6 6.6254 -3.5361 -2.5737 12 8 7.8113 -3.2920 -1.8148 13 6 3.6620 -6.0061 -2.2048 14 7 3.3936 -6.1673 -3.6509 15 6 3.5550 -7.5679 -4.0633 16 6 2.4275 -8.3916 -3.4965 17 8 1.5732 -7.8636 -2.8163 18 7 2.3677 -9.7147 -3.7462 19 6 1.3416 -10.4639 -3.2310 20 1 0.5814 -9.9940 -2.6247 21 6 1.2803 -11.8280 -3.4880 22 7 2.2056 -12.3999 -4.2254 23 14 -0.1174 -12.8490 -2.7854 24 1 -1.2482 -12.8689 -3.7477 25 1 0.3545 -14.2367 -2.5474 26 1 -0.5695 -12.2529 -1.5026 27 6 4.5981 -5.3747 -3.9830 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5400 0.9354 -0.0004 30 1 2.2452 1.6198 -1.0276 31 1 1.4745 2.0647 0.5138 32 1 3.0159 1.1747 0.5138 33 1 1.4385 -2.0857 0.4334 34 1 2.9741 -1.1991 0.5890 35 1 3.0523 -0.9028 -1.8717 36 1 1.5166 -1.7893 -2.0272 37 1 3.3652 -3.1024 -3.4427 38 1 5.5416 -4.1886 -0.8300 39 1 6.2685 -5.5067 -1.7800 40 1 6.8954 -3.9322 -3.5526 41 1 6.0755 -2.6032 -2.6985 42 1 8.4155 -2.6565 -2.2226 43 1 4.2936 -6.7891 -1.7854 44 1 2.7681 -5.8154 -1.6109 45 1 3.5393 -7.6305 -5.1514 46 1 4.5060 -7.9491 -3.6911 47 1 3.0507 -10.1369 -4.2905 48 1 2.1626 -13.3522 -4.4051 49 1 4.4522 -4.6795 -4.8098 50 1 5.5036 -5.9731 -4.0836 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734067891.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:12 Heat of formation + Delta-G solvation = -77.475423 kcal Electronic energy + Delta-G solvation = -29832.362555 eV Core-core repulsion = 25667.926277 eV Total energy + Delta-G solvation = -4164.436278 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.00393 -39.09151 -37.82506 -36.98453 -36.54905 -34.23014 -33.74837 -32.07072 -31.22642 -30.87093 -28.96695 -27.54436 -26.27891 -25.55034 -24.70440 -23.73474 -21.91061 -20.66794 -19.31319 -19.15799 -18.61413 -17.88817 -17.66600 -17.09295 -16.25364 -15.95797 -15.83603 -15.28814 -15.21647 -14.91974 -14.71197 -14.60144 -14.26182 -14.16723 -13.93715 -13.68250 -13.45842 -13.20742 -13.01077 -12.84213 -12.35983 -12.28484 -12.08441 -11.98630 -11.92449 -11.67691 -11.54689 -11.34591 -11.25505 -11.11237 -11.08171 -10.93971 -10.60360 -10.38335 -10.21391 -10.19865 -9.72425 -9.49371 -9.25267 -9.07927 -8.66283 -8.22022 -7.95291 -6.40838 -3.81439 1.95718 2.63952 3.04030 3.18754 3.27269 3.33625 3.80089 3.91224 4.01971 4.19339 4.29727 4.47565 4.65113 4.79639 4.82146 4.92788 4.94093 4.99278 5.03166 5.10193 5.20372 5.25186 5.27373 5.31578 5.34599 5.41362 5.48509 5.57460 5.64466 5.64889 5.67561 5.69390 5.76766 5.79899 5.88228 5.98026 6.11235 6.21455 6.29580 6.40260 6.52374 6.63410 6.67304 7.13616 7.38549 7.46708 7.56270 8.06643 8.23432 8.62322 9.19098 9.54890 10.06819 10.76960 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011161 B = 0.002502 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2508.117978 B =11190.150398 C =13144.865012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.128 4.128 3 C -0.120 4.120 4 C -0.071 4.071 5 C -0.132 4.132 6 C 0.515 3.485 7 O -0.530 6.530 8 N -0.703 5.703 9 C 0.149 3.851 10 C -0.123 4.123 11 C 0.082 3.918 12 O -0.574 6.574 13 C 0.029 3.971 14 N -0.449 5.449 15 C 0.009 3.991 16 C 0.443 3.557 17 O -0.577 6.577 18 N -0.565 5.565 19 C -0.298 4.298 20 H 0.102 0.898 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.270 1.270 27 C -0.002 4.002 28 H 0.099 0.901 29 H 0.096 0.904 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.402 0.598 38 H 0.091 0.909 39 H 0.079 0.921 40 H 0.045 0.955 41 H 0.043 0.957 42 H 0.377 0.623 43 H 0.073 0.927 44 H 0.100 0.900 45 H 0.091 0.909 46 H 0.055 0.945 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.091 0.909 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.298 24.742 -0.049 26.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.128 4.128 3 C -0.177 4.177 4 C -0.108 4.108 5 C -0.172 4.172 6 C 0.302 3.698 7 O -0.406 6.406 8 N -0.354 5.354 9 C 0.062 3.938 10 C -0.162 4.162 11 C 0.004 3.996 12 O -0.379 6.379 13 C -0.100 4.100 14 N -0.171 5.171 15 C -0.123 4.123 16 C 0.228 3.772 17 O -0.461 6.461 18 N -0.202 5.202 19 C -0.427 4.427 20 H 0.120 0.880 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.757 3.243 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.194 1.194 27 C -0.132 4.132 28 H 0.117 0.883 29 H 0.114 0.886 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.109 0.891 36 H 0.113 0.887 37 H 0.237 0.763 38 H 0.110 0.890 39 H 0.098 0.902 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.223 0.777 43 H 0.091 0.909 44 H 0.119 0.881 45 H 0.109 0.891 46 H 0.073 0.927 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.110 0.890 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.972 24.204 1.242 25.219 hybrid contribution 0.587 -0.752 -0.814 1.254 sum 7.559 23.452 0.428 24.644 Atomic orbital electron populations 1.23754 0.95291 1.01984 1.02101 1.21773 0.95442 0.95659 0.99912 1.20874 1.00229 0.94562 1.01987 1.20431 1.00885 0.94306 0.95219 1.21617 1.01273 0.94839 0.99517 1.20660 0.78932 0.86671 0.83552 1.90717 1.56075 1.62296 1.31520 1.45555 1.53388 1.27578 1.08928 1.21686 0.90082 0.85926 0.96141 1.21781 0.92965 0.99954 1.01466 1.22100 0.85717 0.98045 0.93737 1.86509 1.33235 1.66941 1.51209 1.24114 1.00364 0.94021 0.91516 1.68456 1.32305 1.08650 1.07739 1.22478 0.97923 0.90186 1.01713 1.19664 0.88392 0.82980 0.86120 1.90538 1.41678 1.71329 1.42513 1.41864 1.25606 1.06085 1.46612 1.19691 1.04131 0.89791 1.29097 0.87970 1.25259 0.98470 0.97099 0.97159 1.69611 1.34114 1.12292 1.38379 0.85859 0.80457 0.78577 0.79420 1.20401 1.20923 1.19416 1.24384 0.94799 0.97671 0.96318 0.88257 0.88583 0.91546 0.91969 0.91809 0.90323 0.90521 0.89081 0.88729 0.76265 0.89025 0.90232 0.93716 0.93877 0.77700 0.90858 0.88120 0.89088 0.92691 0.77524 0.91900 0.89029 0.90000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.60 13.89 29.02 0.40 -1.19 16 2 C -0.13 -1.06 5.31 -101.06 -0.54 -1.59 16 3 C -0.12 -0.77 10.03 36.01 0.36 -0.41 16 4 C -0.07 -0.68 4.67 -27.88 -0.13 -0.81 16 5 C -0.13 -1.15 5.68 -27.88 -0.16 -1.31 16 6 C 0.52 6.24 7.41 -10.98 -0.08 6.16 16 7 O -0.53 -8.59 13.98 5.56 0.08 -8.51 16 8 N -0.70 -7.51 4.91 -48.69 -0.24 -7.75 16 9 C 0.15 1.82 0.60 -133.51 -0.08 1.74 16 10 C -0.12 -1.46 4.92 -26.73 -0.13 -1.59 16 11 C 0.08 0.75 6.81 37.16 0.25 1.01 16 12 O -0.57 -5.74 13.66 -35.23 -0.48 -6.22 16 13 C 0.03 0.49 5.73 -2.76 -0.02 0.48 16 14 N -0.45 -7.29 5.95 -239.57 -1.42 -8.71 16 15 C 0.01 0.16 5.31 -4.98 -0.03 0.13 16 16 C 0.44 10.65 7.59 -10.99 -0.08 10.57 16 17 O -0.58 -16.02 15.13 5.55 0.08 -15.94 16 18 N -0.56 -14.53 5.29 -10.96 -0.06 -14.58 16 19 C -0.30 -8.43 9.68 -14.93 -0.14 -8.58 16 20 H 0.10 3.05 7.16 -52.49 -0.38 2.68 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.78 13.05 55.50 0.72 -24.06 16 23 Si 0.93 21.41 29.55 -169.99 -5.02 16.38 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 26 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 27 C 0.00 -0.02 6.67 -2.77 -0.02 -0.04 16 28 H 0.10 0.85 7.99 -52.49 -0.42 0.43 16 29 H 0.10 0.67 8.04 -52.48 -0.42 0.25 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.36 8.06 -51.93 -0.42 -0.05 16 32 H 0.06 0.40 8.08 -51.93 -0.42 -0.02 16 33 H 0.08 0.90 7.94 -51.93 -0.41 0.49 16 34 H 0.08 0.79 8.06 -51.93 -0.42 0.37 16 35 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.40 3.21 8.64 -40.82 -0.35 2.86 16 38 H 0.09 1.34 6.54 -51.93 -0.34 1.00 16 39 H 0.08 0.96 8.06 -51.93 -0.42 0.54 16 40 H 0.04 0.34 7.78 -51.93 -0.40 -0.06 16 41 H 0.04 0.36 7.83 -51.93 -0.41 -0.05 16 42 H 0.38 1.89 9.12 45.56 0.42 2.30 16 43 H 0.07 1.25 7.68 -51.93 -0.40 0.85 16 44 H 0.10 2.06 7.77 -51.93 -0.40 1.66 16 45 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 46 H 0.06 0.87 7.69 -51.93 -0.40 0.47 16 47 H 0.39 9.59 7.90 -40.82 -0.32 9.26 16 48 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 49 H 0.09 0.82 8.08 -51.93 -0.42 0.40 16 50 H 0.08 0.82 7.75 -51.93 -0.40 0.42 16 LS Contribution 413.67 15.07 6.23 6.23 Total: -1.00 -35.70 413.67 -8.16 -43.86 By element: Atomic # 1 Polarization: 21.81 SS G_CDS: -7.56 Total: 14.24 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: -0.49 Total: 5.05 kcal Atomic # 7 Polarization: -54.10 SS G_CDS: -1.00 Total: -55.10 kcal Atomic # 8 Polarization: -30.35 SS G_CDS: -0.32 Total: -30.67 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -35.70 -8.16 -43.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734067891.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.616 kcal (2) G-P(sol) polarization free energy of solvation -35.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds