Wall clock time and date at job start Sat Apr 11 2020 05:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50702 * 120.00146 * 2 1 4 4 C 1.50698 * 119.99833 * 180.02562 * 2 1 3 5 5 C 1.53002 * 109.47169 * 95.00085 * 4 2 1 6 6 C 1.50700 * 109.46910 * 179.97438 * 5 4 2 7 7 O 1.21281 * 120.00449 * 0.02562 * 6 5 4 8 8 N 1.34783 * 119.99785 * 179.97438 * 6 5 4 9 9 C 1.46502 * 119.99826 * 175.06589 * 8 6 5 10 10 C 1.53001 * 112.93806 * 299.88327 * 9 8 6 11 11 C 1.52995 * 109.47385 * 294.28284 * 10 9 8 12 12 O 1.42894 * 109.47334 * 175.67902 * 11 10 9 13 13 C 1.53937 * 113.82968 * 71.54434 * 9 8 6 14 14 N 1.47962 * 86.17878 * 90.64953 * 13 9 8 15 15 C 1.46898 * 110.99986 * 137.58154 * 14 13 9 16 16 C 1.50700 * 109.47302 * 70.63672 * 15 14 13 17 17 O 1.21293 * 119.99662 * 0.02562 * 16 15 14 18 18 N 1.34776 * 120.00178 * 179.97438 * 16 15 14 19 19 C 1.37098 * 119.99928 * 180.02562 * 18 16 15 20 20 H 1.07998 * 120.00277 * 359.97438 * 19 18 16 21 21 C 1.38951 * 119.99929 * 180.02562 * 19 18 16 22 22 N 1.31410 * 119.99983 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 120.00054 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47312 * 89.99344 * 23 21 19 25 25 H 1.48494 * 109.46996 * 209.99528 * 23 21 19 26 26 H 1.48501 * 109.46917 * 329.99769 * 23 21 19 27 27 C 1.47959 * 90.76598 * 24.68851 * 14 13 9 28 28 H 1.08000 * 120.00265 * 179.97438 * 1 2 3 29 29 H 1.08006 * 119.99917 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.47608 * 269.99860 * 3 2 1 31 31 H 1.08993 * 109.47139 * 30.00147 * 3 2 1 32 32 H 1.09002 * 109.47009 * 150.00193 * 3 2 1 33 33 H 1.09001 * 109.47421 * 335.00008 * 4 2 1 34 34 H 1.09007 * 109.46901 * 215.00045 * 4 2 1 35 35 H 1.09000 * 109.47158 * 60.00625 * 5 4 2 36 36 H 1.08997 * 109.47033 * 299.99791 * 5 4 2 37 37 H 0.96995 * 120.00130 * 355.06348 * 8 6 5 38 38 H 1.09004 * 109.47021 * 54.28425 * 10 9 8 39 39 H 1.09001 * 109.47089 * 174.27927 * 10 9 8 40 40 H 1.08999 * 109.47024 * 295.68561 * 11 10 9 41 41 H 1.09004 * 109.47194 * 55.68089 * 11 10 9 42 42 H 0.96702 * 114.00360 * 180.02562 * 12 11 10 43 43 H 1.08996 * 113.75905 * 204.96489 * 13 9 8 44 44 H 1.08996 * 113.75941 * 336.33162 * 13 9 8 45 45 H 1.08997 * 109.47568 * 190.64103 * 15 14 13 46 46 H 1.09007 * 109.47267 * 310.64190 * 15 14 13 47 47 H 0.97003 * 120.00269 * 0.02562 * 18 16 15 48 48 H 0.97002 * 119.99977 * 180.02562 * 22 21 19 49 49 H 1.08999 * 113.76230 * 220.99263 * 27 14 13 50 50 H 1.09003 * 113.75903 * 89.62610 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0634 -1.3051 -0.0006 5 6 2.4273 -1.6833 -1.4378 6 6 3.1813 -2.9881 -1.4382 7 8 3.4051 -3.5596 -0.3922 8 7 3.6060 -3.5206 -2.6013 9 6 4.4313 -4.7310 -2.5946 10 6 5.7483 -4.5506 -1.8372 11 6 6.6254 -3.5361 -2.5737 12 8 7.8113 -3.2920 -1.8148 13 6 3.6620 -6.0061 -2.2048 14 7 3.3936 -6.1673 -3.6509 15 6 3.5550 -7.5679 -4.0633 16 6 2.4275 -8.3916 -3.4965 17 8 1.5732 -7.8636 -2.8163 18 7 2.3677 -9.7147 -3.7462 19 6 1.3416 -10.4639 -3.2310 20 1 0.5814 -9.9940 -2.6247 21 6 1.2803 -11.8280 -3.4880 22 7 2.2056 -12.3999 -4.2254 23 14 -0.1174 -12.8490 -2.7854 24 1 -1.2482 -12.8689 -3.7477 25 1 0.3545 -14.2367 -2.5474 26 1 -0.5695 -12.2529 -1.5026 27 6 4.5981 -5.3747 -3.9830 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5400 0.9354 -0.0004 30 1 2.2452 1.6198 -1.0276 31 1 1.4745 2.0647 0.5138 32 1 3.0159 1.1747 0.5138 33 1 1.4385 -2.0857 0.4334 34 1 2.9741 -1.1991 0.5890 35 1 3.0523 -0.9028 -1.8717 36 1 1.5166 -1.7893 -2.0272 37 1 3.3652 -3.1024 -3.4427 38 1 5.5416 -4.1886 -0.8300 39 1 6.2685 -5.5067 -1.7800 40 1 6.8954 -3.9322 -3.5526 41 1 6.0755 -2.6032 -2.6985 42 1 8.4155 -2.6565 -2.2226 43 1 4.2936 -6.7891 -1.7854 44 1 2.7681 -5.8154 -1.6109 45 1 3.5393 -7.6305 -5.1514 46 1 4.5060 -7.9491 -3.6911 47 1 3.0507 -10.1369 -4.2905 48 1 2.1626 -13.3522 -4.4051 49 1 4.4522 -4.6795 -4.8098 50 1 5.5036 -5.9731 -4.0836 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734067891.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:11 Heat of formation + Delta-G solvation = -108.768150 kcal Electronic energy + Delta-G solvation = -29833.719509 eV Core-core repulsion = 25667.926277 eV Total energy + Delta-G solvation = -4165.793232 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.10796 -40.35312 -39.47949 -37.77567 -37.27631 -36.02002 -35.13403 -33.34149 -32.95963 -31.65800 -30.30394 -28.09101 -27.47078 -27.08082 -25.87282 -24.84605 -23.06020 -21.62708 -20.99301 -20.31388 -19.90885 -19.30064 -18.45026 -18.06250 -17.79599 -17.10256 -16.85539 -16.63843 -16.43487 -16.18191 -15.97545 -15.58225 -15.53362 -15.31461 -15.04744 -14.89070 -14.60155 -14.30497 -14.06674 -13.77945 -13.59632 -13.51329 -13.34402 -13.08742 -12.98444 -12.92246 -12.62381 -12.57333 -12.52109 -12.45465 -12.20650 -12.11589 -11.95557 -11.82599 -11.61906 -11.52714 -10.91837 -10.69018 -10.37803 -10.13134 -10.04512 -9.91125 -9.68142 -8.49887 -5.98494 1.30249 1.34625 1.38226 1.51025 1.68133 2.02163 2.14800 2.26095 2.76796 3.00174 3.16776 3.26330 3.40223 3.69729 3.86612 3.97662 4.05030 4.12236 4.18614 4.24434 4.26328 4.34418 4.37739 4.42241 4.45020 4.49972 4.56142 4.64693 4.67669 4.71255 4.77333 4.87943 4.89891 4.95789 4.99027 5.09444 5.14873 5.16800 5.20213 5.30616 5.37644 5.60777 5.75396 5.82550 5.99630 6.02334 6.57256 6.61104 6.94781 7.09899 7.33724 7.52743 8.09538 8.67483 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011161 B = 0.002502 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2508.117978 B =11190.150398 C =13144.865012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.129 4.129 3 C -0.118 4.118 4 C -0.070 4.070 5 C -0.122 4.122 6 C 0.508 3.492 7 O -0.579 6.579 8 N -0.692 5.692 9 C 0.165 3.835 10 C -0.119 4.119 11 C 0.088 3.912 12 O -0.598 6.598 13 C 0.017 3.983 14 N -0.470 5.470 15 C 0.021 3.979 16 C 0.437 3.563 17 O -0.622 6.622 18 N -0.573 5.573 19 C -0.334 4.334 20 H 0.074 0.926 21 C -0.012 4.012 22 N -0.918 5.918 23 Si 0.991 3.009 24 H -0.269 1.269 25 H -0.268 1.268 26 H -0.277 1.277 27 C 0.015 3.985 28 H 0.087 0.913 29 H 0.112 0.888 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.049 0.951 34 H 0.067 0.933 35 H 0.126 0.874 36 H 0.105 0.895 37 H 0.420 0.580 38 H 0.057 0.943 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.055 0.945 42 H 0.398 0.602 43 H 0.061 0.939 44 H 0.050 0.950 45 H 0.119 0.881 46 H 0.078 0.922 47 H 0.397 0.603 48 H 0.278 0.722 49 H 0.129 0.871 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.684 26.454 -2.462 28.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.129 4.129 3 C -0.174 4.174 4 C -0.108 4.108 5 C -0.161 4.161 6 C 0.296 3.704 7 O -0.459 6.459 8 N -0.345 5.345 9 C 0.077 3.923 10 C -0.158 4.158 11 C 0.010 3.990 12 O -0.407 6.407 13 C -0.113 4.113 14 N -0.192 5.192 15 C -0.110 4.110 16 C 0.225 3.775 17 O -0.508 6.508 18 N -0.211 5.211 19 C -0.463 4.463 20 H 0.092 0.908 21 C -0.212 4.212 22 N -0.559 5.559 23 Si 0.815 3.185 24 H -0.194 1.194 25 H -0.193 1.193 26 H -0.202 1.202 27 C -0.113 4.113 28 H 0.106 0.894 29 H 0.130 0.870 30 H 0.100 0.900 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.085 0.915 35 H 0.144 0.856 36 H 0.124 0.876 37 H 0.258 0.742 38 H 0.076 0.924 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.074 0.926 42 H 0.248 0.752 43 H 0.079 0.921 44 H 0.068 0.932 45 H 0.137 0.863 46 H 0.096 0.904 47 H 0.231 0.769 48 H 0.088 0.912 49 H 0.147 0.853 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 8.392 25.944 -1.238 27.295 hybrid contribution 0.162 -1.274 -0.013 1.285 sum 8.554 24.669 -1.251 26.140 Atomic orbital electron populations 1.23844 0.95443 1.02245 1.02230 1.21823 0.95470 0.95706 0.99887 1.20895 1.00021 0.93403 1.03120 1.20364 1.00107 0.94506 0.95811 1.21618 1.01767 0.93682 0.99080 1.21342 0.78441 0.87464 0.83107 1.90707 1.57964 1.63808 1.33394 1.45486 1.52724 1.26788 1.09464 1.21456 0.89530 0.84651 0.96709 1.21683 0.93349 1.00693 1.00110 1.22045 0.85300 0.97712 0.93917 1.86451 1.33899 1.68006 1.52354 1.23995 0.98796 0.96896 0.91599 1.68424 1.35749 1.08014 1.07048 1.22396 0.95672 0.90127 1.02807 1.20851 0.89215 0.82729 0.84732 1.90512 1.43917 1.72126 1.44243 1.41930 1.25367 1.06815 1.47006 1.19601 1.05137 0.90949 1.30641 0.90813 1.26016 1.00697 0.97438 0.97042 1.69660 1.34956 1.12913 1.38371 0.84957 0.77774 0.77370 0.78406 1.19423 1.19263 1.20184 1.24530 0.93536 0.96911 0.96342 0.89427 0.86979 0.89975 0.91206 0.91747 0.93238 0.91463 0.85599 0.87630 0.74214 0.92417 0.90783 0.90993 0.92632 0.75157 0.92065 0.93158 0.86331 0.90391 0.76901 0.91224 0.85304 0.87690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.20 13.89 67.79 0.94 -2.26 16 2 C -0.13 -2.03 5.31 -16.48 -0.09 -2.12 16 3 C -0.12 -1.29 10.03 71.24 0.71 -0.57 16 4 C -0.07 -1.39 4.67 29.85 0.14 -1.26 16 5 C -0.12 -2.00 5.68 29.85 0.17 -1.83 16 6 C 0.51 12.46 7.41 87.66 0.65 13.11 16 7 O -0.58 -20.15 13.98 -3.03 -0.04 -20.19 16 8 N -0.69 -13.93 4.91 -426.35 -2.09 -16.02 16 9 C 0.16 3.86 0.60 5.17 0.00 3.87 16 10 C -0.12 -2.76 4.92 30.59 0.15 -2.61 16 11 C 0.09 1.36 6.81 71.98 0.49 1.85 16 12 O -0.60 -10.62 13.66 -148.98 -2.03 -12.66 16 13 C 0.02 0.61 5.73 86.41 0.50 1.10 16 14 N -0.47 -14.74 5.95 -911.85 -5.42 -20.16 16 15 C 0.02 0.73 5.31 85.56 0.45 1.19 16 16 C 0.44 21.54 7.59 87.66 0.67 22.21 16 17 O -0.62 -36.28 15.13 -3.07 -0.05 -36.33 16 18 N -0.57 -30.22 5.29 -306.99 -1.62 -31.84 16 19 C -0.33 -19.54 9.68 84.04 0.81 -18.73 16 20 H 0.07 4.66 7.16 -2.91 -0.02 4.64 16 21 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 22 N -0.92 -50.15 13.05 21.66 0.28 -49.86 16 23 Si 0.99 44.11 29.55 68.60 2.03 46.14 16 24 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 25 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 26 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 27 C 0.01 0.28 6.67 86.41 0.58 0.86 16 28 H 0.09 1.57 7.99 -2.91 -0.02 1.55 16 29 H 0.11 1.41 8.04 -2.91 -0.02 1.38 16 30 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.07 0.67 8.06 -2.39 -0.02 0.65 16 32 H 0.06 0.70 8.08 -2.39 -0.02 0.68 16 33 H 0.05 1.25 7.94 -2.39 -0.02 1.23 16 34 H 0.07 1.45 8.06 -2.38 -0.02 1.43 16 35 H 0.13 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.42 5.46 8.64 -92.71 -0.80 4.66 16 38 H 0.06 1.75 6.54 -2.38 -0.02 1.74 16 39 H 0.07 1.76 8.06 -2.39 -0.02 1.74 16 40 H 0.07 0.75 7.78 -2.39 -0.02 0.73 16 41 H 0.06 0.73 7.83 -2.39 -0.02 0.71 16 42 H 0.40 2.86 9.12 -74.06 -0.68 2.19 16 43 H 0.06 2.22 7.68 -2.39 -0.02 2.20 16 44 H 0.05 2.24 7.77 -2.39 -0.02 2.23 16 45 H 0.12 3.43 8.14 -2.39 -0.02 3.41 16 46 H 0.08 2.32 7.69 -2.38 -0.02 2.30 16 47 H 0.40 19.62 7.90 -92.71 -0.73 18.89 16 48 H 0.28 14.18 8.31 -92.71 -0.77 13.41 16 49 H 0.13 1.57 8.08 -2.39 -0.02 1.55 16 50 H 0.11 1.59 7.75 -2.39 -0.02 1.58 16 Total: -1.00 -83.67 413.67 -3.56 -87.23 By element: Atomic # 1 Polarization: 40.32 SS G_CDS: -1.24 Total: 39.08 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: 6.64 Total: 14.62 kcal Atomic # 7 Polarization: -109.03 SS G_CDS: -8.86 Total: -117.89 kcal Atomic # 8 Polarization: -67.05 SS G_CDS: -2.12 Total: -69.17 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -83.67 -3.56 -87.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734067891.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.539 kcal (2) G-P(sol) polarization free energy of solvation -83.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds