Wall clock time and date at job start Sat Apr 11 2020 05:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46953 * 2 1 4 4 C 1.52997 * 109.47516 * 119.99875 * 2 1 3 5 5 H 1.08999 * 109.46983 * 300.00443 * 4 2 1 6 6 C 1.52993 * 109.47602 * 180.02562 * 4 2 1 7 7 C 1.52992 * 109.47516 * 175.00111 * 6 4 2 8 8 N 1.46504 * 109.47482 * 180.02562 * 7 6 4 9 9 C 1.46497 * 119.99835 * 270.00314 * 8 7 6 10 10 C 1.34773 * 119.99951 * 90.00103 * 8 7 6 11 11 O 1.21283 * 120.00083 * 359.97438 * 10 8 7 12 12 C 1.50699 * 120.00087 * 180.02562 * 10 8 7 13 13 N 1.46499 * 109.47263 * 179.97438 * 12 10 8 14 14 C 1.33875 * 122.75828 * 269.70459 * 13 12 10 15 15 O 1.21224 * 125.40130 * 359.97438 * 14 13 12 16 16 C 1.51317 * 109.20338 * 179.84247 * 14 13 12 17 17 C 1.54218 * 103.55818 * 0.38830 * 16 14 13 18 18 C 1.33877 * 122.76554 * 89.99537 * 13 12 10 19 19 O 1.21228 * 125.39533 * 359.97438 * 18 13 12 20 20 N 1.46506 * 109.46691 * 60.00182 * 4 2 1 21 21 C 1.36939 * 120.00073 * 274.72524 * 20 4 2 22 22 H 1.08004 * 119.99859 * 0.02562 * 21 20 4 23 23 C 1.38805 * 119.99849 * 180.02562 * 21 20 4 24 24 N 1.31625 * 120.00056 * 179.97438 * 23 21 20 25 25 Si 1.86801 * 120.00155 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.46896 * 90.00225 * 25 23 21 27 27 H 1.48501 * 109.47275 * 210.00265 * 25 23 21 28 28 H 1.48499 * 109.47039 * 330.00065 * 25 23 21 29 29 H 1.08999 * 109.47357 * 299.99910 * 1 2 3 30 30 H 1.08996 * 109.47049 * 60.00068 * 1 2 3 31 31 H 1.09002 * 109.46430 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47271 * 240.00866 * 2 1 3 33 33 H 1.08998 * 109.47401 * 179.97438 * 3 2 1 34 34 H 1.09005 * 109.46989 * 300.00360 * 3 2 1 35 35 H 1.08999 * 109.47016 * 59.99881 * 3 2 1 36 36 H 1.09001 * 109.47081 * 295.00295 * 6 4 2 37 37 H 1.09001 * 109.47168 * 54.99852 * 6 4 2 38 38 H 1.09001 * 109.47096 * 300.00175 * 7 6 4 39 39 H 1.09000 * 109.47141 * 60.00264 * 7 6 4 40 40 H 1.09002 * 109.47441 * 89.99749 * 9 8 7 41 41 H 1.09003 * 109.47321 * 209.99669 * 9 8 7 42 42 H 1.09004 * 109.47381 * 329.99752 * 9 8 7 43 43 H 1.09009 * 109.46729 * 299.99415 * 12 10 8 44 44 H 1.08998 * 109.47309 * 59.99411 * 12 10 8 45 45 H 1.09002 * 110.79899 * 241.77559 * 16 14 13 46 46 H 1.08999 * 110.54717 * 118.87838 * 16 14 13 47 47 H 1.08998 * 110.60904 * 241.26472 * 17 16 14 48 48 H 1.08996 * 110.60997 * 118.29123 * 17 16 14 49 49 H 0.97005 * 119.99811 * 95.00317 * 20 4 2 50 50 H 0.97000 * 119.99835 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.6767 -0.2074 2.1392 6 6 3.5700 -0.7206 1.2495 7 6 4.0800 -1.3302 2.5568 8 7 5.5451 -1.3291 2.5574 9 6 6.2786 -2.4783 2.0211 10 6 6.2179 -0.2710 3.0513 11 8 5.6107 0.6806 3.4948 12 6 7.7249 -0.2696 3.0513 13 7 8.2121 0.9826 3.6352 14 6 8.4581 2.0759 2.9028 15 8 8.3136 2.1642 1.7024 16 6 8.9419 3.1851 3.8112 17 6 8.9424 2.5333 5.2089 18 6 8.4533 1.1261 4.9442 19 8 8.3033 0.2651 5.7844 20 7 1.5518 -2.1025 1.2491 21 6 0.3125 -2.3906 1.7555 22 1 -0.3051 -1.5995 2.1545 23 6 -0.1499 -3.6994 1.7559 24 7 -1.3409 -3.9765 2.2431 25 14 0.9180 -5.0675 1.0651 26 1 1.7650 -5.6290 2.1480 27 1 0.0524 -6.1380 0.5083 28 1 1.7856 -4.5232 -0.0102 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 1.8934 -0.5137 -0.8901 33 1 3.1300 1.4427 0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 3.9338 -1.3098 0.4077 37 1 3.9330 0.3033 1.1602 38 1 3.7163 -0.7411 3.3987 39 1 3.7171 -2.3542 2.6462 40 1 6.4605 -2.3287 0.9568 41 1 7.2309 -2.5768 2.5421 42 1 5.6901 -3.3844 2.1652 43 1 8.0890 -1.1114 3.6405 44 1 8.0884 -0.3584 2.0276 45 1 8.2584 4.0337 3.7839 46 1 9.9488 3.4960 3.5326 47 1 8.2590 3.0575 5.8769 48 1 9.9499 2.5174 5.6245 49 1 2.1080 -2.8135 0.8941 50 1 -1.6641 -4.8910 2.2430 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734080562.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:28 Heat of formation + Delta-G solvation = -85.311228 kcal Electronic energy + Delta-G solvation = -30761.003854 eV Core-core repulsion = 26596.227790 eV Total energy + Delta-G solvation = -4164.776064 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -42.29109 -39.80213 -38.88525 -37.51254 -36.16599 -35.60152 -33.89662 -33.05563 -31.69395 -30.31575 -28.40759 -27.09417 -26.56878 -26.23826 -25.12380 -22.79102 -22.75630 -21.41951 -20.29644 -19.44568 -19.14011 -17.94415 -17.59335 -17.46894 -16.85255 -16.69408 -15.90386 -15.59307 -15.13941 -14.96680 -14.53955 -14.29496 -14.27861 -14.07490 -13.88949 -13.66765 -13.57199 -13.31684 -13.18243 -13.11559 -12.62767 -12.52328 -12.42412 -12.22890 -11.81180 -11.78088 -11.56374 -11.38862 -11.04359 -11.02031 -10.83176 -10.71801 -10.51878 -10.40548 -10.39789 -10.16496 -10.04495 -9.92888 -9.63114 -9.41132 -8.91307 -8.65297 -7.23378 -5.75144 -3.09527 1.18401 1.94741 2.35905 2.43644 2.99291 3.34898 3.36859 3.44092 3.66419 3.80127 4.00347 4.21983 4.42987 4.58930 4.59735 4.74294 4.89586 4.98832 4.99965 5.15851 5.18581 5.19473 5.22303 5.34144 5.43863 5.49910 5.56407 5.63301 5.76992 5.85010 5.99176 6.03797 6.11932 6.28093 6.33579 6.40538 6.45928 6.46451 6.62036 6.68244 6.73890 6.84847 6.94966 7.12048 7.23612 7.39906 7.40093 7.99840 8.03043 8.43874 9.22472 9.94773 10.15350 11.43224 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015098 B = 0.002882 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.106474 B = 9711.523812 C =10651.481039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.109 4.109 3 C -0.146 4.146 4 C 0.190 3.810 5 H 0.057 0.943 6 C -0.139 4.139 7 C 0.119 3.881 8 N -0.609 5.609 9 C 0.071 3.929 10 C 0.501 3.499 11 O -0.529 6.529 12 C 0.079 3.921 13 N -0.559 5.559 14 C 0.531 3.469 15 O -0.479 6.479 16 C -0.154 4.154 17 C -0.154 4.154 18 C 0.531 3.469 19 O -0.479 6.479 20 N -0.747 5.747 21 C -0.233 4.233 22 H 0.093 0.907 23 C 0.002 3.998 24 N -0.935 5.935 25 Si 0.880 3.120 26 H -0.286 1.286 27 H -0.293 1.293 28 H -0.278 1.278 29 H 0.042 0.958 30 H 0.029 0.971 31 H 0.087 0.913 32 H 0.057 0.943 33 H 0.048 0.952 34 H 0.043 0.957 35 H 0.050 0.950 36 H 0.057 0.943 37 H 0.069 0.931 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.061 0.939 41 H 0.068 0.932 42 H 0.080 0.920 43 H 0.122 0.878 44 H 0.123 0.877 45 H 0.123 0.877 46 H 0.121 0.879 47 H 0.123 0.877 48 H 0.121 0.879 49 H 0.358 0.642 50 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.452 11.777 1.525 28.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.130 4.130 3 C -0.204 4.204 4 C 0.080 3.920 5 H 0.075 0.925 6 C -0.179 4.179 7 C -0.003 4.003 8 N -0.342 5.342 9 C -0.072 4.072 10 C 0.286 3.714 11 O -0.405 6.405 12 C -0.046 4.046 13 N -0.302 5.302 14 C 0.320 3.680 15 O -0.350 6.350 16 C -0.194 4.194 17 C -0.193 4.193 18 C 0.320 3.680 19 O -0.350 6.350 20 N -0.390 5.390 21 C -0.363 4.363 22 H 0.111 0.889 23 C -0.193 4.193 24 N -0.583 5.583 25 Si 0.710 3.290 26 H -0.213 1.213 27 H -0.220 1.220 28 H -0.204 1.204 29 H 0.062 0.938 30 H 0.048 0.952 31 H 0.106 0.894 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.102 0.898 39 H 0.107 0.893 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.099 0.901 43 H 0.140 0.860 44 H 0.140 0.860 45 H 0.141 0.859 46 H 0.139 0.861 47 H 0.141 0.859 48 H 0.139 0.861 49 H 0.191 0.809 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 24.719 11.831 1.684 27.456 hybrid contribution 0.546 -1.336 -0.699 1.604 sum 25.264 10.495 0.985 27.375 Atomic orbital electron populations 1.21830 0.94750 1.04069 0.99048 1.21709 0.96954 0.94470 0.99877 1.21919 1.00255 0.97349 1.00864 1.20192 0.89581 0.86397 0.95849 0.92491 1.22258 0.97619 1.01096 0.96878 1.21656 0.76180 1.03182 0.99248 1.47925 1.07998 1.17561 1.60730 1.21916 0.97007 0.89153 0.99116 1.20589 0.89534 0.83003 0.78240 1.90721 1.69650 1.34029 1.46107 1.21649 0.93338 0.87068 1.02539 1.46344 1.59080 1.14009 1.10801 1.20835 0.75258 0.83914 0.87968 1.90793 1.49031 1.81819 1.13332 1.22450 1.05741 0.98252 0.92929 1.22453 1.05684 0.92468 0.98742 1.20846 0.75289 0.90954 0.80907 1.90795 1.49016 1.47327 1.47883 1.42843 1.18565 1.02801 1.74746 1.19081 0.91646 0.94051 1.31508 0.88898 1.24657 0.96520 0.96843 1.01280 1.69696 1.17914 1.18998 1.51672 0.86621 0.80227 0.83181 0.78923 1.21283 1.21951 1.20385 0.93843 0.95220 0.89404 0.92485 0.93267 0.93749 0.93119 0.92389 0.91252 0.89780 0.89333 0.92068 0.91316 0.90113 0.85983 0.85958 0.85851 0.86079 0.85868 0.86052 0.80897 0.93166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 8.28 37.16 0.31 -2.41 16 2 C -0.11 -1.95 2.69 -90.62 -0.24 -2.19 16 3 C -0.15 -2.26 8.85 37.16 0.33 -1.93 16 4 C 0.19 3.61 2.02 -67.93 -0.14 3.47 16 5 H 0.06 1.18 8.08 -51.93 -0.42 0.76 16 6 C -0.14 -2.26 4.86 -26.74 -0.13 -2.39 16 7 C 0.12 1.89 5.34 -4.04 -0.02 1.87 16 8 N -0.61 -8.05 2.87 -181.57 -0.52 -8.57 16 9 C 0.07 0.65 10.28 59.85 0.62 1.27 16 10 C 0.50 7.06 7.74 -10.99 -0.09 6.98 16 11 O -0.53 -9.44 16.01 5.56 0.09 -9.35 16 12 C 0.08 0.80 4.59 -5.19 -0.02 0.78 16 13 N -0.56 -5.66 2.04 -116.62 -0.24 -5.90 16 14 C 0.53 5.11 8.08 -11.08 -0.09 5.02 16 15 O -0.48 -6.25 17.47 5.61 0.10 -6.15 16 16 C -0.15 -0.70 7.03 -26.94 -0.19 -0.89 16 17 C -0.15 -0.70 7.03 -26.94 -0.19 -0.89 16 18 C 0.53 5.14 8.08 -11.08 -0.09 5.05 16 19 O -0.48 -6.31 17.48 5.60 0.10 -6.22 16 20 N -0.75 -16.64 4.25 -53.43 -0.23 -16.87 16 21 C -0.23 -6.22 8.06 -15.06 -0.12 -6.34 16 22 H 0.09 2.70 7.65 -52.48 -0.40 2.30 16 23 C 0.00 0.07 5.50 -17.43 -0.10 -0.03 16 24 N -0.93 -28.82 13.97 55.49 0.78 -28.05 16 25 Si 0.88 21.42 27.73 -169.99 -4.71 16.71 16 26 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 27 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 28 H -0.28 -6.33 6.52 56.52 0.37 -5.96 16 29 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.09 2.00 6.03 -51.93 -0.31 1.69 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.05 0.73 6.32 -51.93 -0.33 0.40 16 34 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.07 1.14 6.17 -51.93 -0.32 0.82 16 38 H 0.08 1.51 7.42 -51.93 -0.39 1.12 16 39 H 0.09 1.47 7.51 -51.93 -0.39 1.08 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.44 6.44 -51.93 -0.33 0.11 16 42 H 0.08 0.74 7.89 -51.93 -0.41 0.33 16 43 H 0.12 1.01 7.09 -51.92 -0.37 0.64 16 44 H 0.12 1.02 7.79 -51.93 -0.40 0.61 16 45 H 0.12 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.12 0.23 8.14 -51.93 -0.42 -0.19 16 47 H 0.12 0.46 8.14 -51.93 -0.42 0.03 16 48 H 0.12 0.23 8.14 -51.93 -0.42 -0.19 16 49 H 0.36 7.85 5.66 -40.82 -0.23 7.62 16 50 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 402.90 15.07 6.07 6.07 Total: -1.00 -36.83 402.90 -6.86 -43.69 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -8.12 Total: 7.28 kcal Atomic # 6 Polarization: 7.52 SS G_CDS: -0.16 Total: 7.35 kcal Atomic # 7 Polarization: -59.17 SS G_CDS: -0.21 Total: -59.39 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: 0.28 Total: -21.72 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.71 Total: 16.71 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -36.83 -6.86 -43.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734080562.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.622 kcal (2) G-P(sol) polarization free energy of solvation -36.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds