Wall clock time and date at job start Sat Apr 11 2020 05:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46953 * 2 1 4 4 C 1.52997 * 109.47516 * 119.99875 * 2 1 3 5 5 H 1.08999 * 109.46983 * 300.00443 * 4 2 1 6 6 C 1.52993 * 109.47602 * 180.02562 * 4 2 1 7 7 C 1.52992 * 109.47516 * 175.00111 * 6 4 2 8 8 N 1.46504 * 109.47482 * 180.02562 * 7 6 4 9 9 C 1.46497 * 119.99835 * 270.00314 * 8 7 6 10 10 C 1.34773 * 119.99951 * 90.00103 * 8 7 6 11 11 O 1.21283 * 120.00083 * 359.97438 * 10 8 7 12 12 C 1.50699 * 120.00087 * 180.02562 * 10 8 7 13 13 N 1.46499 * 109.47263 * 179.97438 * 12 10 8 14 14 C 1.33875 * 122.75828 * 269.70459 * 13 12 10 15 15 O 1.21224 * 125.40130 * 359.97438 * 14 13 12 16 16 C 1.51317 * 109.20338 * 179.84247 * 14 13 12 17 17 C 1.54218 * 103.55818 * 0.38830 * 16 14 13 18 18 C 1.33877 * 122.76554 * 89.99537 * 13 12 10 19 19 O 1.21228 * 125.39533 * 359.97438 * 18 13 12 20 20 N 1.46506 * 109.46691 * 60.00182 * 4 2 1 21 21 C 1.36939 * 120.00073 * 274.72524 * 20 4 2 22 22 H 1.08004 * 119.99859 * 0.02562 * 21 20 4 23 23 C 1.38805 * 119.99849 * 180.02562 * 21 20 4 24 24 N 1.31625 * 120.00056 * 179.97438 * 23 21 20 25 25 Si 1.86801 * 120.00155 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.46896 * 90.00225 * 25 23 21 27 27 H 1.48501 * 109.47275 * 210.00265 * 25 23 21 28 28 H 1.48499 * 109.47039 * 330.00065 * 25 23 21 29 29 H 1.08999 * 109.47357 * 299.99910 * 1 2 3 30 30 H 1.08996 * 109.47049 * 60.00068 * 1 2 3 31 31 H 1.09002 * 109.46430 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47271 * 240.00866 * 2 1 3 33 33 H 1.08998 * 109.47401 * 179.97438 * 3 2 1 34 34 H 1.09005 * 109.46989 * 300.00360 * 3 2 1 35 35 H 1.08999 * 109.47016 * 59.99881 * 3 2 1 36 36 H 1.09001 * 109.47081 * 295.00295 * 6 4 2 37 37 H 1.09001 * 109.47168 * 54.99852 * 6 4 2 38 38 H 1.09001 * 109.47096 * 300.00175 * 7 6 4 39 39 H 1.09000 * 109.47141 * 60.00264 * 7 6 4 40 40 H 1.09002 * 109.47441 * 89.99749 * 9 8 7 41 41 H 1.09003 * 109.47321 * 209.99669 * 9 8 7 42 42 H 1.09004 * 109.47381 * 329.99752 * 9 8 7 43 43 H 1.09009 * 109.46729 * 299.99415 * 12 10 8 44 44 H 1.08998 * 109.47309 * 59.99411 * 12 10 8 45 45 H 1.09002 * 110.79899 * 241.77559 * 16 14 13 46 46 H 1.08999 * 110.54717 * 118.87838 * 16 14 13 47 47 H 1.08998 * 110.60904 * 241.26472 * 17 16 14 48 48 H 1.08996 * 110.60997 * 118.29123 * 17 16 14 49 49 H 0.97005 * 119.99811 * 95.00317 * 20 4 2 50 50 H 0.97000 * 119.99835 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.6767 -0.2074 2.1392 6 6 3.5700 -0.7206 1.2495 7 6 4.0800 -1.3302 2.5568 8 7 5.5451 -1.3291 2.5574 9 6 6.2786 -2.4783 2.0211 10 6 6.2179 -0.2710 3.0513 11 8 5.6107 0.6806 3.4948 12 6 7.7249 -0.2696 3.0513 13 7 8.2121 0.9826 3.6352 14 6 8.4581 2.0759 2.9028 15 8 8.3136 2.1642 1.7024 16 6 8.9419 3.1851 3.8112 17 6 8.9424 2.5333 5.2089 18 6 8.4533 1.1261 4.9442 19 8 8.3033 0.2651 5.7844 20 7 1.5518 -2.1025 1.2491 21 6 0.3125 -2.3906 1.7555 22 1 -0.3051 -1.5995 2.1545 23 6 -0.1499 -3.6994 1.7559 24 7 -1.3409 -3.9765 2.2431 25 14 0.9180 -5.0675 1.0651 26 1 1.7650 -5.6290 2.1480 27 1 0.0524 -6.1380 0.5083 28 1 1.7856 -4.5232 -0.0102 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 1.8934 -0.5137 -0.8901 33 1 3.1300 1.4427 0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 3.9338 -1.3098 0.4077 37 1 3.9330 0.3033 1.1602 38 1 3.7163 -0.7411 3.3987 39 1 3.7171 -2.3542 2.6462 40 1 6.4605 -2.3287 0.9568 41 1 7.2309 -2.5768 2.5421 42 1 5.6901 -3.3844 2.1652 43 1 8.0890 -1.1114 3.6405 44 1 8.0884 -0.3584 2.0276 45 1 8.2584 4.0337 3.7839 46 1 9.9488 3.4960 3.5326 47 1 8.2590 3.0575 5.8769 48 1 9.9499 2.5174 5.6245 49 1 2.1080 -2.8135 0.8941 50 1 -1.6641 -4.8910 2.2430 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734080562.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:26 Heat of formation + Delta-G solvation = -111.203268 kcal Electronic energy + Delta-G solvation = -30762.126617 eV Core-core repulsion = 26596.227790 eV Total energy + Delta-G solvation = -4165.898827 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.00042 -40.88740 -39.68274 -39.07178 -37.00054 -36.73112 -34.98133 -34.52206 -33.20496 -32.04651 -29.34892 -28.13077 -27.65385 -27.12477 -26.51912 -24.55075 -23.35010 -22.87300 -21.27943 -20.99476 -20.07051 -19.46961 -18.79107 -18.41069 -17.59168 -17.51127 -16.98201 -16.84233 -16.62548 -15.92625 -15.76359 -15.34909 -15.29816 -15.27243 -15.04069 -14.93122 -14.61508 -14.47445 -14.27147 -14.20589 -13.80260 -13.57390 -13.46046 -13.39728 -13.08371 -13.03764 -12.93442 -12.83783 -12.51351 -12.28860 -12.11360 -11.95661 -11.81197 -11.77918 -11.72392 -11.65040 -11.49032 -11.30466 -11.13862 -10.87903 -10.66039 -9.81500 -9.22984 -7.94991 -5.27222 0.48522 1.22744 1.38048 1.38360 1.42620 1.50019 1.68639 2.03966 2.53153 3.19367 3.25018 3.32982 3.34984 3.59104 3.62729 3.85445 3.90327 4.00245 4.05791 4.11494 4.18686 4.22021 4.25931 4.33090 4.41124 4.57837 4.61634 4.64960 4.70848 4.75845 4.85406 4.86310 4.90091 4.91804 4.96378 5.01352 5.09531 5.14026 5.26559 5.34285 5.41871 5.58682 5.70582 5.72792 5.86521 6.21136 6.26888 6.27693 6.67476 6.93844 7.14227 7.88312 8.10233 9.26815 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015098 B = 0.002882 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.106474 B = 9711.523812 C =10651.481039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.104 4.104 3 C -0.137 4.137 4 C 0.188 3.812 5 H 0.032 0.968 6 C -0.122 4.122 7 C 0.125 3.875 8 N -0.608 5.608 9 C 0.062 3.938 10 C 0.492 3.508 11 O -0.577 6.577 12 C 0.080 3.920 13 N -0.568 5.568 14 C 0.522 3.478 15 O -0.520 6.520 16 C -0.141 4.141 17 C -0.141 4.141 18 C 0.522 3.478 19 O -0.524 6.524 20 N -0.744 5.744 21 C -0.206 4.206 22 H 0.056 0.944 23 C -0.069 4.069 24 N -0.989 5.989 25 Si 0.949 3.051 26 H -0.278 1.278 27 H -0.304 1.304 28 H -0.248 1.248 29 H 0.030 0.970 30 H 0.052 0.948 31 H 0.049 0.951 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.044 0.956 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.054 0.946 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.098 0.902 42 H 0.081 0.919 43 H 0.141 0.859 44 H 0.143 0.857 45 H 0.136 0.864 46 H 0.157 0.843 47 H 0.135 0.865 48 H 0.157 0.843 49 H 0.365 0.635 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.438 12.688 0.298 32.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.125 4.125 3 C -0.195 4.195 4 C 0.079 3.921 5 H 0.050 0.950 6 C -0.161 4.161 7 C 0.002 3.998 8 N -0.341 5.341 9 C -0.079 4.079 10 C 0.279 3.721 11 O -0.456 6.456 12 C -0.045 4.045 13 N -0.310 5.310 14 C 0.314 3.686 15 O -0.394 6.394 16 C -0.180 4.180 17 C -0.180 4.180 18 C 0.314 3.686 19 O -0.398 6.398 20 N -0.387 5.387 21 C -0.337 4.337 22 H 0.074 0.926 23 C -0.260 4.260 24 N -0.641 5.641 25 Si 0.778 3.222 26 H -0.205 1.205 27 H -0.232 1.232 28 H -0.173 1.173 29 H 0.050 0.950 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.063 0.937 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.072 0.928 39 H 0.101 0.899 40 H 0.097 0.903 41 H 0.116 0.884 42 H 0.100 0.900 43 H 0.158 0.842 44 H 0.160 0.840 45 H 0.154 0.846 46 H 0.175 0.825 47 H 0.153 0.847 48 H 0.175 0.825 49 H 0.199 0.801 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 28.783 12.775 0.431 31.494 hybrid contribution -0.737 -1.524 -0.286 1.716 sum 28.047 11.251 0.145 30.219 Atomic orbital electron populations 1.21729 0.96149 1.01645 0.99638 1.21617 0.95621 0.96216 0.99074 1.21823 1.00786 0.95341 1.01559 1.20307 0.91648 0.84534 0.95597 0.94974 1.22064 0.94975 1.01507 0.97586 1.21361 0.78436 1.02008 0.98016 1.47992 1.06887 1.18710 1.60468 1.22238 0.97830 0.87432 1.00433 1.21348 0.91224 0.82326 0.77192 1.90687 1.70920 1.35843 1.48178 1.21732 0.90226 0.88359 1.04213 1.46637 1.58710 1.14254 1.11386 1.21757 0.74150 0.84714 0.87931 1.90765 1.50967 1.82502 1.15211 1.22592 1.07717 0.96482 0.91182 1.22596 1.07604 0.88629 0.99124 1.21794 0.74164 0.92514 0.80169 1.90768 1.51055 1.49166 1.48793 1.42749 1.17031 1.04491 1.74400 1.18921 0.92427 0.92940 1.29396 0.92590 1.25434 0.98028 0.99669 1.02836 1.69894 1.20464 1.19231 1.54475 0.85483 0.78506 0.79278 0.78981 1.20455 1.23182 1.17254 0.95038 0.92855 0.93218 0.91709 0.92278 0.91846 0.93670 0.90632 0.91139 0.92765 0.89949 0.90314 0.88353 0.90021 0.84166 0.83973 0.84571 0.82544 0.84661 0.82549 0.80123 0.93728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.25 8.28 71.98 0.60 -4.66 16 2 C -0.10 -3.63 2.69 -10.79 -0.03 -3.66 16 3 C -0.14 -4.00 8.85 71.98 0.64 -3.36 16 4 C 0.19 7.15 2.02 44.99 0.09 7.24 16 5 H 0.03 1.39 8.08 -2.39 -0.02 1.37 16 6 C -0.12 -3.84 4.86 30.59 0.15 -3.69 16 7 C 0.12 3.97 5.34 86.38 0.46 4.43 16 8 N -0.61 -15.42 2.87 -846.76 -2.43 -17.86 16 9 C 0.06 0.97 10.28 127.77 1.31 2.28 16 10 C 0.49 13.61 7.74 87.66 0.68 14.28 16 11 O -0.58 -20.96 16.01 -3.04 -0.05 -21.01 16 12 C 0.08 1.50 4.59 85.63 0.39 1.89 16 13 N -0.57 -10.69 2.04 -760.72 -1.55 -12.24 16 14 C 0.52 9.11 8.08 87.99 0.71 9.82 16 15 O -0.52 -12.97 17.47 -2.86 -0.05 -13.02 16 16 C -0.14 -0.79 7.03 30.46 0.21 -0.58 16 17 C -0.14 -0.82 7.03 30.46 0.21 -0.61 16 18 C 0.52 9.32 8.08 87.99 0.71 10.04 16 19 O -0.52 -13.54 17.48 -2.87 -0.05 -13.59 16 20 N -0.74 -33.11 4.25 -322.95 -1.37 -34.49 16 21 C -0.21 -11.35 8.06 84.03 0.68 -10.67 16 22 H 0.06 3.46 7.65 -2.91 -0.02 3.44 16 23 C -0.07 -4.01 5.50 84.86 0.47 -3.55 16 24 N -0.99 -63.48 13.97 21.65 0.30 -63.18 16 25 Si 0.95 44.45 27.73 68.60 1.90 46.35 16 26 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 27 H -0.30 -14.81 7.11 99.48 0.71 -14.10 16 28 H -0.25 -10.27 6.52 99.48 0.65 -9.62 16 29 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.05 2.32 6.03 -2.39 -0.01 2.30 16 32 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.06 1.62 6.32 -2.39 -0.02 1.60 16 34 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 35 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.07 2.24 6.17 -2.39 -0.01 2.23 16 38 H 0.05 2.04 7.42 -2.39 -0.02 2.02 16 39 H 0.08 2.70 7.51 -2.39 -0.02 2.69 16 40 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.10 0.95 6.44 -2.39 -0.02 0.93 16 42 H 0.08 1.29 7.89 -2.38 -0.02 1.27 16 43 H 0.14 2.06 7.09 -2.38 -0.02 2.04 16 44 H 0.14 2.06 7.79 -2.39 -0.02 2.04 16 45 H 0.14 0.52 8.14 -2.39 -0.02 0.50 16 46 H 0.16 -0.16 8.14 -2.39 -0.02 -0.18 16 47 H 0.14 0.56 8.14 -2.39 -0.02 0.54 16 48 H 0.16 -0.13 8.14 -2.39 -0.02 -0.15 16 49 H 0.37 15.39 5.66 -92.70 -0.53 14.86 16 50 H 0.25 15.65 8.31 -92.71 -0.77 14.88 16 Total: -1.00 -86.18 402.90 4.34 -81.84 By element: Atomic # 1 Polarization: 27.62 SS G_CDS: 0.36 Total: 27.98 kcal Atomic # 6 Polarization: 11.94 SS G_CDS: 7.28 Total: 19.22 kcal Atomic # 7 Polarization: -122.70 SS G_CDS: -5.06 Total: -127.76 kcal Atomic # 8 Polarization: -47.48 SS G_CDS: -0.15 Total: -47.62 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 1.90 Total: 46.35 kcal Total: -86.18 4.34 -81.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734080562.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.368 kcal (2) G-P(sol) polarization free energy of solvation -86.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds