Wall clock time and date at job start Sat Apr 11 2020 05:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47299 * 2 1 4 4 C 1.53002 * 109.47058 * 239.99662 * 2 1 3 5 5 C 1.50698 * 109.47104 * 119.99668 * 2 1 3 6 6 O 1.20787 * 119.99975 * 0.02562 * 5 2 1 7 7 C 1.49084 * 120.00224 * 179.97438 * 5 2 1 8 8 O 1.21369 * 120.00097 * 0.02562 * 7 5 2 9 9 N 1.34779 * 120.00261 * 180.02562 * 7 5 2 10 10 C 1.47426 * 125.64641 * 4.58586 * 9 7 5 11 11 C 1.55388 * 104.87635 * 204.16737 * 10 9 7 12 12 C 1.55163 * 101.36224 * 323.01727 * 11 10 9 13 13 C 1.47019 * 125.65070 * 184.62736 * 9 7 5 14 14 H 1.08997 * 109.87886 * 59.49057 * 13 9 7 15 15 C 1.52999 * 110.00908 * 298.39630 * 13 9 7 16 16 N 1.46902 * 109.46930 * 176.67356 * 15 13 9 17 17 C 1.46902 * 111.00001 * 184.90631 * 16 15 13 18 18 C 1.50702 * 109.46918 * 179.97438 * 17 16 15 19 19 O 1.21290 * 120.00338 * 0.02562 * 18 17 16 20 20 N 1.34780 * 119.99725 * 180.02562 * 18 17 16 21 21 C 1.37098 * 119.99739 * 180.02562 * 20 18 17 22 22 H 1.07993 * 120.00137 * 359.97438 * 21 20 18 23 23 C 1.38955 * 119.99742 * 180.02562 * 21 20 18 24 24 N 1.31412 * 119.99771 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 119.99975 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46811 * 89.99812 * 25 23 21 27 27 H 1.48499 * 109.47248 * 209.99752 * 25 23 21 28 28 H 1.48499 * 109.47368 * 330.00284 * 25 23 21 29 29 H 1.09005 * 109.47185 * 300.00448 * 1 2 3 30 30 H 1.09007 * 109.46714 * 59.99941 * 1 2 3 31 31 H 1.08994 * 109.47219 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47326 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.47152 * 300.00175 * 3 2 1 34 34 H 1.09005 * 109.47367 * 59.99664 * 3 2 1 35 35 H 1.08998 * 109.47044 * 300.00378 * 4 2 1 36 36 H 1.09002 * 109.46721 * 60.00236 * 4 2 1 37 37 H 1.09002 * 109.46754 * 180.02562 * 4 2 1 38 38 H 1.09001 * 110.37034 * 323.00416 * 10 9 7 39 39 H 1.09006 * 110.36699 * 85.21351 * 10 9 7 40 40 H 1.08996 * 111.18836 * 204.98266 * 11 10 9 41 41 H 1.08995 * 111.02029 * 80.98263 * 11 10 9 42 42 H 1.08997 * 110.71837 * 277.03925 * 12 11 10 43 43 H 1.09002 * 110.71319 * 153.94385 * 12 11 10 44 44 H 1.08993 * 109.47278 * 296.66875 * 15 13 9 45 45 H 1.08993 * 109.47344 * 56.67637 * 15 13 9 46 46 H 1.00903 * 111.00040 * 308.86188 * 16 15 13 47 47 H 1.09000 * 109.47072 * 300.00198 * 17 16 15 48 48 H 1.09002 * 109.46818 * 60.00426 * 17 16 15 49 49 H 0.97002 * 119.99823 * 359.97438 * 20 18 17 50 50 H 0.97004 * 119.99811 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0324 -0.7103 1.2305 6 8 1.2474 -1.1697 2.0254 7 6 3.4981 -0.8471 1.4662 8 8 4.2868 -0.3859 0.6673 9 7 3.9473 -1.4828 2.5664 10 6 3.1078 -2.1698 3.5648 11 6 3.9561 -2.1706 4.8667 12 6 5.3845 -2.3868 4.3006 13 6 5.3557 -1.6053 2.9702 14 1 5.7879 -0.6149 3.1126 15 6 6.1422 -2.3675 1.9019 16 7 7.5613 -2.4139 2.2786 17 6 8.3670 -3.0369 1.2199 18 6 9.8137 -3.0661 1.6410 19 8 10.1413 -2.6131 2.7174 20 7 10.7434 -3.5958 0.8215 21 6 12.0595 -3.6229 1.2049 22 1 12.3512 -3.2195 2.1632 23 6 13.0181 -4.1685 0.3598 24 7 12.6631 -4.6589 -0.8066 25 14 14.8113 -4.2047 0.8817 26 1 15.0899 -5.4699 1.6077 27 1 15.6786 -4.1228 -0.3209 28 1 15.0908 -3.0506 1.7733 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6766 -1.7490 -1.2492 36 1 1.6767 -0.2075 -2.1392 37 1 3.1300 -0.7217 -1.2489 38 1 2.1775 -1.6230 3.7190 39 1 2.8984 -3.1910 3.2461 40 1 3.6680 -2.9909 5.5240 41 1 3.8811 -1.2135 5.3828 42 1 5.5724 -3.4455 4.1221 43 1 6.1335 -1.9721 4.9754 44 1 5.7546 -3.3829 1.8206 45 1 6.0374 -1.8606 0.9427 46 1 7.9068 -1.4923 2.5009 47 1 8.0173 -4.0550 1.0488 48 1 8.2681 -2.4594 0.3008 49 1 10.4813 -3.9585 -0.0391 50 1 13.3324 -5.0394 -1.3967 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754606925.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:57 Heat of formation + Delta-G solvation = -103.346529 kcal Electronic energy + Delta-G solvation = -29962.218845 eV Core-core repulsion = 25796.660712 eV Total energy + Delta-G solvation = -4165.558133 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.37380 -39.49439 -38.24297 -37.84923 -36.13966 -35.19731 -33.80324 -31.87850 -31.22564 -30.28045 -27.84744 -27.67955 -26.79103 -26.41358 -24.70672 -23.51139 -22.59398 -21.72673 -20.30002 -19.24785 -18.78162 -17.88073 -17.45417 -17.04691 -16.39819 -15.95380 -15.81266 -15.35880 -15.17986 -14.72379 -14.60132 -14.39452 -14.11973 -13.84437 -13.79202 -13.60833 -13.38046 -13.32274 -13.04626 -12.84250 -12.58670 -12.54348 -12.47414 -12.26639 -11.99564 -11.83493 -11.66591 -11.61043 -11.47573 -11.39675 -11.37118 -11.07469 -10.99990 -10.86799 -10.83079 -10.38017 -10.19977 -9.52175 -9.48789 -9.00073 -8.42184 -8.03250 -7.93549 -6.39587 -3.80343 0.64883 2.25765 2.67874 3.19381 3.27730 3.33722 3.55253 3.93668 4.11478 4.14326 4.28587 4.41047 4.44541 4.46965 4.52774 4.73588 4.86337 4.93693 5.13208 5.16217 5.17719 5.24243 5.25058 5.29871 5.39285 5.43181 5.44692 5.49324 5.55201 5.56299 5.62236 5.68954 5.71863 5.80748 5.84388 5.90135 5.92316 5.93308 6.01829 6.10546 6.15238 6.29375 6.57971 7.07170 7.20662 7.57166 7.60567 7.68028 8.08479 8.63565 9.19897 9.56741 10.08155 10.78226 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017932 B = 0.002119 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.098085 B =13209.737460 C =14320.897188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.094 4.094 3 C -0.144 4.144 4 C -0.144 4.144 5 C 0.365 3.635 6 O -0.417 6.417 7 C 0.486 3.514 8 O -0.501 6.501 9 N -0.589 5.589 10 C 0.090 3.910 11 C -0.138 4.138 12 C -0.115 4.115 13 C 0.135 3.865 14 H 0.080 0.920 15 C 0.048 3.952 16 N -0.663 5.663 17 C 0.052 3.948 18 C 0.442 3.558 19 O -0.583 6.583 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.021 3.979 24 N -0.902 5.902 25 Si 0.931 3.069 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.097 0.903 39 H 0.073 0.927 40 H 0.086 0.914 41 H 0.075 0.925 42 H 0.085 0.915 43 H 0.089 0.911 44 H 0.071 0.929 45 H 0.046 0.954 46 H 0.349 0.651 47 H 0.085 0.915 48 H 0.044 0.956 49 H 0.392 0.608 50 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.550 7.463 2.469 27.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.095 4.095 3 C -0.201 4.201 4 C -0.202 4.202 5 C 0.234 3.766 6 O -0.286 6.286 7 C 0.271 3.729 8 O -0.377 6.377 9 N -0.324 5.324 10 C -0.032 4.032 11 C -0.176 4.176 12 C -0.153 4.153 13 C 0.032 3.968 14 H 0.098 0.902 15 C -0.082 4.082 16 N -0.296 5.296 17 C -0.081 4.081 18 C 0.228 3.772 19 O -0.468 6.468 20 N -0.201 5.201 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.543 5.543 25 Si 0.758 3.242 26 H -0.204 1.204 27 H -0.210 1.210 28 H -0.194 1.194 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.115 0.885 39 H 0.091 0.909 40 H 0.105 0.895 41 H 0.093 0.907 42 H 0.104 0.896 43 H 0.108 0.892 44 H 0.089 0.911 45 H 0.064 0.936 46 H 0.168 0.832 47 H 0.103 0.897 48 H 0.062 0.938 49 H 0.225 0.775 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -26.308 7.138 3.337 27.462 hybrid contribution 0.793 0.283 -1.088 1.376 sum -25.515 7.421 2.249 26.667 Atomic orbital electron populations 1.21786 0.92086 1.02828 1.02566 1.20962 0.97359 0.97475 0.93736 1.21917 1.03396 0.92312 1.02518 1.21921 1.03428 0.99692 0.95127 1.24959 0.88468 0.76341 0.86786 1.90351 1.58758 1.36319 1.43159 1.20625 0.90753 0.80049 0.81435 1.90743 1.56838 1.46845 1.43259 1.48643 1.08721 1.51992 1.23033 1.22818 0.94984 0.97820 0.87590 1.22964 0.95430 1.02971 0.96236 1.22615 0.96503 1.01703 0.94439 1.21720 0.80163 0.99924 0.94962 0.90168 1.22288 0.89137 1.00007 0.96774 1.60073 1.00113 1.28104 1.41265 1.21657 0.93425 1.00325 0.92645 1.19788 0.86424 0.84565 0.86442 1.90514 1.81556 1.51386 1.23307 1.41865 1.06960 1.53051 1.18209 1.19702 0.82058 1.37082 1.03972 0.87916 1.25271 1.00571 0.96878 0.95317 1.69618 1.35254 1.40296 1.09173 0.85849 0.81647 0.78833 0.77902 1.20405 1.20957 1.19431 0.92003 0.91372 0.91958 0.90060 0.91059 0.92584 0.92507 0.91035 0.90034 0.88501 0.90910 0.89511 0.90662 0.89613 0.89237 0.91101 0.93627 0.83217 0.89686 0.93766 0.77451 0.91892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.90 7.76 37.16 0.29 -0.62 16 2 C -0.09 -0.76 0.76 -155.66 -0.12 -0.87 16 3 C -0.14 -1.09 8.29 37.16 0.31 -0.78 16 4 C -0.14 -1.13 8.29 37.16 0.31 -0.82 16 5 C 0.36 3.62 6.00 -29.81 -0.18 3.44 16 6 O -0.42 -4.37 13.33 5.98 0.08 -4.29 16 7 C 0.49 5.68 7.40 -11.76 -0.09 5.59 16 8 O -0.50 -6.84 12.22 5.48 0.07 -6.78 16 9 N -0.59 -6.46 3.07 -163.36 -0.50 -6.96 16 10 C 0.09 0.80 6.24 -2.27 -0.01 0.78 16 11 C -0.14 -1.07 7.12 -24.32 -0.17 -1.24 16 12 C -0.11 -1.15 6.23 -24.89 -0.16 -1.30 16 13 C 0.14 1.58 3.04 -66.96 -0.20 1.38 16 14 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 15 C 0.05 0.66 5.09 -3.82 -0.02 0.64 16 16 N -0.66 -10.96 5.92 -115.06 -0.68 -11.64 16 17 C 0.05 0.96 6.16 -4.97 -0.03 0.93 16 18 C 0.44 10.64 7.82 -10.98 -0.09 10.56 16 19 O -0.58 -15.97 15.78 5.55 0.09 -15.88 16 20 N -0.56 -14.57 5.29 -10.96 -0.06 -14.63 16 21 C -0.30 -8.44 9.68 -14.93 -0.14 -8.58 16 22 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 23 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -24.86 13.05 55.50 0.72 -24.14 16 25 Si 0.93 21.27 29.55 -169.99 -5.02 16.24 16 26 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 27 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 28 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 29 H 0.06 0.42 8.10 -51.93 -0.42 0.00 16 30 H 0.07 0.35 8.14 -51.92 -0.42 -0.07 16 31 H 0.06 0.43 8.10 -51.93 -0.42 0.01 16 32 H 0.08 0.76 6.43 -51.93 -0.33 0.43 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.08 0.79 6.43 -51.93 -0.33 0.46 16 38 H 0.10 0.86 5.90 -51.93 -0.31 0.55 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.09 0.92 7.80 -51.93 -0.40 0.52 16 43 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.07 0.95 8.06 -51.93 -0.42 0.54 16 45 H 0.05 0.69 6.60 -51.93 -0.34 0.34 16 46 H 0.35 5.99 8.36 -39.29 -0.33 5.66 16 47 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 48 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 49 H 0.39 9.72 7.90 -40.82 -0.32 9.40 16 50 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 401.73 15.07 6.05 6.05 Total: -1.00 -32.03 401.73 -7.87 -39.90 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: -8.22 Total: 12.53 kcal Atomic # 6 Polarization: 9.99 SS G_CDS: -0.40 Total: 9.58 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: -0.52 Total: -57.36 kcal Atomic # 8 Polarization: -27.19 SS G_CDS: 0.23 Total: -26.95 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -32.03 -7.87 -39.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754606925.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.446 kcal (2) G-P(sol) polarization free energy of solvation -32.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds