Wall clock time and date at job start Sat Apr 11 2020 05:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47299 * 2 1 4 4 C 1.53002 * 109.47058 * 239.99662 * 2 1 3 5 5 C 1.50698 * 109.47104 * 119.99668 * 2 1 3 6 6 O 1.20787 * 119.99975 * 0.02562 * 5 2 1 7 7 C 1.49084 * 120.00224 * 179.97438 * 5 2 1 8 8 O 1.21369 * 120.00097 * 0.02562 * 7 5 2 9 9 N 1.34779 * 120.00261 * 180.02562 * 7 5 2 10 10 C 1.47426 * 125.64641 * 4.58586 * 9 7 5 11 11 C 1.55388 * 104.87635 * 204.16737 * 10 9 7 12 12 C 1.55163 * 101.36224 * 323.01727 * 11 10 9 13 13 C 1.47019 * 125.65070 * 184.62736 * 9 7 5 14 14 H 1.08997 * 109.87886 * 59.49057 * 13 9 7 15 15 C 1.52999 * 110.00908 * 298.39630 * 13 9 7 16 16 N 1.46902 * 109.46930 * 176.67356 * 15 13 9 17 17 C 1.46902 * 111.00001 * 184.90631 * 16 15 13 18 18 C 1.50702 * 109.46918 * 179.97438 * 17 16 15 19 19 O 1.21290 * 120.00338 * 0.02562 * 18 17 16 20 20 N 1.34780 * 119.99725 * 180.02562 * 18 17 16 21 21 C 1.37098 * 119.99739 * 180.02562 * 20 18 17 22 22 H 1.07993 * 120.00137 * 359.97438 * 21 20 18 23 23 C 1.38955 * 119.99742 * 180.02562 * 21 20 18 24 24 N 1.31412 * 119.99771 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 119.99975 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46811 * 89.99812 * 25 23 21 27 27 H 1.48499 * 109.47248 * 209.99752 * 25 23 21 28 28 H 1.48499 * 109.47368 * 330.00284 * 25 23 21 29 29 H 1.09005 * 109.47185 * 300.00448 * 1 2 3 30 30 H 1.09007 * 109.46714 * 59.99941 * 1 2 3 31 31 H 1.08994 * 109.47219 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47326 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.47152 * 300.00175 * 3 2 1 34 34 H 1.09005 * 109.47367 * 59.99664 * 3 2 1 35 35 H 1.08998 * 109.47044 * 300.00378 * 4 2 1 36 36 H 1.09002 * 109.46721 * 60.00236 * 4 2 1 37 37 H 1.09002 * 109.46754 * 180.02562 * 4 2 1 38 38 H 1.09001 * 110.37034 * 323.00416 * 10 9 7 39 39 H 1.09006 * 110.36699 * 85.21351 * 10 9 7 40 40 H 1.08996 * 111.18836 * 204.98266 * 11 10 9 41 41 H 1.08995 * 111.02029 * 80.98263 * 11 10 9 42 42 H 1.08997 * 110.71837 * 277.03925 * 12 11 10 43 43 H 1.09002 * 110.71319 * 153.94385 * 12 11 10 44 44 H 1.08993 * 109.47278 * 296.66875 * 15 13 9 45 45 H 1.08993 * 109.47344 * 56.67637 * 15 13 9 46 46 H 1.00903 * 111.00040 * 308.86188 * 16 15 13 47 47 H 1.09000 * 109.47072 * 300.00198 * 17 16 15 48 48 H 1.09002 * 109.46818 * 60.00426 * 17 16 15 49 49 H 0.97002 * 119.99823 * 359.97438 * 20 18 17 50 50 H 0.97004 * 119.99811 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0324 -0.7103 1.2305 6 8 1.2474 -1.1697 2.0254 7 6 3.4981 -0.8471 1.4662 8 8 4.2868 -0.3859 0.6673 9 7 3.9473 -1.4828 2.5664 10 6 3.1078 -2.1698 3.5648 11 6 3.9561 -2.1706 4.8667 12 6 5.3845 -2.3868 4.3006 13 6 5.3557 -1.6053 2.9702 14 1 5.7879 -0.6149 3.1126 15 6 6.1422 -2.3675 1.9019 16 7 7.5613 -2.4139 2.2786 17 6 8.3670 -3.0369 1.2199 18 6 9.8137 -3.0661 1.6410 19 8 10.1413 -2.6131 2.7174 20 7 10.7434 -3.5958 0.8215 21 6 12.0595 -3.6229 1.2049 22 1 12.3512 -3.2195 2.1632 23 6 13.0181 -4.1685 0.3598 24 7 12.6631 -4.6589 -0.8066 25 14 14.8113 -4.2047 0.8817 26 1 15.0899 -5.4699 1.6077 27 1 15.6786 -4.1228 -0.3209 28 1 15.0908 -3.0506 1.7733 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6766 -1.7490 -1.2492 36 1 1.6767 -0.2075 -2.1392 37 1 3.1300 -0.7217 -1.2489 38 1 2.1775 -1.6230 3.7190 39 1 2.8984 -3.1910 3.2461 40 1 3.6680 -2.9909 5.5240 41 1 3.8811 -1.2135 5.3828 42 1 5.5724 -3.4455 4.1221 43 1 6.1335 -1.9721 4.9754 44 1 5.7546 -3.3829 1.8206 45 1 6.0374 -1.8606 0.9427 46 1 7.9068 -1.4923 2.5009 47 1 8.0173 -4.0550 1.0488 48 1 8.2681 -2.4594 0.3008 49 1 10.4813 -3.9585 -0.0391 50 1 13.3324 -5.0394 -1.3967 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754606925.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:55 Heat of formation + Delta-G solvation = -125.467027 kcal Electronic energy + Delta-G solvation = -29963.178062 eV Core-core repulsion = 25796.660712 eV Total energy + Delta-G solvation = -4166.517350 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -42.20213 -40.42622 -40.04264 -38.79404 -36.92287 -36.51407 -35.79000 -33.29520 -32.71541 -31.41036 -28.48173 -28.28488 -28.24285 -27.20182 -26.34059 -24.71224 -23.61206 -22.47489 -21.36755 -20.91370 -19.94158 -19.58253 -18.40046 -18.04710 -17.62902 -17.10128 -16.86093 -16.55836 -16.49373 -16.07288 -16.00774 -15.41098 -15.33979 -15.15252 -14.96507 -14.71608 -14.27706 -14.22501 -14.13006 -13.90308 -13.57947 -13.49532 -13.30751 -13.21919 -13.11465 -13.07409 -12.86654 -12.81070 -12.59314 -12.51492 -12.42787 -12.12404 -12.08736 -11.96745 -11.89455 -11.68952 -11.64068 -11.51678 -10.40478 -10.34446 -10.03381 -9.87651 -9.42346 -8.47628 -5.96745 -0.17605 1.37730 1.40742 1.42167 1.54658 1.81239 2.02355 2.28352 2.70695 2.98420 3.19173 3.42591 3.46494 3.62426 3.65749 3.81172 3.82067 3.85037 4.15342 4.20497 4.24412 4.28059 4.34901 4.46148 4.51157 4.60103 4.63474 4.67575 4.69785 4.80386 4.81272 4.89624 4.90784 4.93192 4.96283 4.97911 5.07804 5.19165 5.20008 5.29173 5.31750 5.36835 5.39952 5.74478 5.82161 6.03022 6.23735 6.26787 6.57827 6.73989 7.10647 7.53604 8.08292 8.69885 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017932 B = 0.002119 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.098085 B =13209.737460 C =14320.897188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.093 4.093 3 C -0.141 4.141 4 C -0.142 4.142 5 C 0.368 3.632 6 O -0.422 6.422 7 C 0.478 3.522 8 O -0.527 6.527 9 N -0.590 5.590 10 C 0.088 3.912 11 C -0.125 4.125 12 C -0.112 4.112 13 C 0.136 3.864 14 H 0.070 0.930 15 C 0.058 3.942 16 N -0.666 5.666 17 C 0.066 3.934 18 C 0.440 3.560 19 O -0.620 6.620 20 N -0.573 5.573 21 C -0.334 4.334 22 H 0.081 0.919 23 C -0.015 4.015 24 N -0.921 5.921 25 Si 0.995 3.005 26 H -0.270 1.270 27 H -0.271 1.271 28 H -0.272 1.272 29 H 0.060 0.940 30 H 0.087 0.913 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.089 0.911 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.090 0.910 37 H 0.059 0.941 38 H 0.100 0.900 39 H 0.079 0.921 40 H 0.108 0.892 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.085 0.915 44 H 0.076 0.924 45 H 0.032 0.968 46 H 0.344 0.656 47 H 0.104 0.896 48 H 0.059 0.941 49 H 0.396 0.604 50 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.952 7.289 2.425 28.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.094 4.094 3 C -0.199 4.199 4 C -0.199 4.199 5 C 0.238 3.762 6 O -0.291 6.291 7 C 0.264 3.736 8 O -0.404 6.404 9 N -0.324 5.324 10 C -0.033 4.033 11 C -0.163 4.163 12 C -0.150 4.150 13 C 0.032 3.968 14 H 0.089 0.911 15 C -0.072 4.072 16 N -0.298 5.298 17 C -0.067 4.067 18 C 0.228 3.772 19 O -0.506 6.506 20 N -0.210 5.210 21 C -0.463 4.463 22 H 0.099 0.901 23 C -0.214 4.214 24 N -0.562 5.562 25 Si 0.819 3.181 26 H -0.195 1.195 27 H -0.196 1.196 28 H -0.197 1.197 29 H 0.079 0.921 30 H 0.106 0.894 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.108 0.892 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.109 0.891 37 H 0.078 0.922 38 H 0.118 0.882 39 H 0.097 0.903 40 H 0.127 0.873 41 H 0.100 0.900 42 H 0.098 0.902 43 H 0.104 0.896 44 H 0.095 0.905 45 H 0.051 0.949 46 H 0.162 0.838 47 H 0.122 0.878 48 H 0.077 0.923 49 H 0.230 0.770 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -27.749 6.947 3.287 28.794 hybrid contribution 1.190 0.347 -1.076 1.642 sum -26.559 7.295 2.211 27.632 Atomic orbital electron populations 1.21776 0.90596 1.02958 1.03493 1.21039 0.98391 0.97363 0.92641 1.21896 1.01998 0.92272 1.03687 1.21901 1.01993 1.00174 0.95841 1.25075 0.87354 0.76318 0.87405 1.90345 1.58473 1.36757 1.43571 1.21107 0.91603 0.79662 0.81233 1.90731 1.57626 1.47895 1.44159 1.48782 1.08620 1.51771 1.23261 1.22965 0.94919 0.97908 0.87515 1.22955 0.93221 1.04244 0.95899 1.22561 0.98079 1.00875 0.93474 1.21648 0.80536 0.99383 0.95194 0.91143 1.22234 0.87586 1.00451 0.96881 1.60077 1.01272 1.27752 1.40731 1.21515 0.89790 1.01933 0.93432 1.20718 0.88321 0.82695 0.85506 1.90483 1.82725 1.52534 1.24860 1.41935 1.06757 1.53675 1.18639 1.19686 0.83721 1.39000 1.03910 0.90144 1.26091 1.04432 0.95803 0.95124 1.69682 1.36759 1.40064 1.09685 0.84894 0.76520 0.78824 0.77892 1.19536 1.19552 1.19687 0.92105 0.89438 0.92219 0.92197 0.89171 0.92154 0.92281 0.89146 0.92222 0.88196 0.90266 0.87345 0.89989 0.90162 0.89593 0.90533 0.94950 0.83795 0.87801 0.92340 0.77034 0.91272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.48 7.76 71.98 0.56 -0.92 16 2 C -0.09 -1.39 0.76 -52.93 -0.04 -1.43 16 3 C -0.14 -2.00 8.29 71.98 0.60 -1.40 16 4 C -0.14 -2.08 8.29 71.98 0.60 -1.49 16 5 C 0.37 7.05 6.00 28.60 0.17 7.22 16 6 O -0.42 -8.35 13.33 -1.53 -0.02 -8.37 16 7 C 0.48 11.14 7.40 87.16 0.64 11.78 16 8 O -0.53 -14.73 12.22 -3.31 -0.04 -14.77 16 9 N -0.59 -12.63 3.07 -789.11 -2.42 -15.05 16 10 C 0.09 1.43 6.24 87.02 0.54 1.97 16 11 C -0.13 -1.69 7.12 32.16 0.23 -1.46 16 12 C -0.11 -2.14 6.23 31.78 0.20 -1.94 16 13 C 0.14 3.14 3.04 45.34 0.14 3.28 16 14 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 15 C 0.06 1.59 5.09 86.30 0.44 2.03 16 16 N -0.67 -22.02 5.92 -517.93 -3.06 -25.08 16 17 C 0.07 2.41 6.16 85.56 0.53 2.93 16 18 C 0.44 21.52 7.82 87.66 0.69 22.20 16 19 O -0.62 -34.74 15.78 -3.06 -0.05 -34.79 16 20 N -0.57 -30.13 5.29 -306.98 -1.62 -31.76 16 21 C -0.33 -19.24 9.68 84.04 0.81 -18.42 16 22 H 0.08 4.92 7.16 -2.91 -0.02 4.90 16 23 C -0.01 -0.80 5.50 84.93 0.47 -0.34 16 24 N -0.92 -50.45 13.05 21.66 0.28 -50.16 16 25 Si 1.00 43.37 29.55 68.60 2.03 45.39 16 26 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 27 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 28 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 29 H 0.06 0.71 8.10 -2.38 -0.02 0.69 16 30 H 0.09 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.06 0.72 8.10 -2.39 -0.02 0.70 16 32 H 0.06 1.13 6.43 -2.39 -0.02 1.11 16 33 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 35 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.06 1.16 6.43 -2.39 -0.02 1.15 16 38 H 0.10 1.60 5.90 -2.39 -0.01 1.59 16 39 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 40 H 0.11 1.04 8.14 -2.39 -0.02 1.03 16 41 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.08 1.64 7.80 -2.39 -0.02 1.62 16 43 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.08 2.00 8.06 -2.39 -0.02 1.98 16 45 H 0.03 0.98 6.60 -2.39 -0.02 0.97 16 46 H 0.34 12.02 8.36 -89.69 -0.75 11.27 16 47 H 0.10 3.43 8.14 -2.39 -0.02 3.41 16 48 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 49 H 0.40 19.87 7.90 -92.71 -0.73 19.14 16 50 H 0.28 14.21 8.31 -92.71 -0.77 13.44 16 Total: -1.00 -69.37 401.73 1.14 -68.23 By element: Atomic # 1 Polarization: 42.86 SS G_CDS: -0.52 Total: 42.34 kcal Atomic # 6 Polarization: 17.45 SS G_CDS: 6.57 Total: 24.02 kcal Atomic # 7 Polarization: -115.23 SS G_CDS: -6.83 Total: -122.05 kcal Atomic # 8 Polarization: -57.82 SS G_CDS: -0.11 Total: -57.93 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.39 kcal Total: -69.37 1.14 -68.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754606925.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.234 kcal (2) G-P(sol) polarization free energy of solvation -69.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds