Wall clock time and date at job start Sat Apr 11 2020 05:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.47193 * 2 1 4 4 C 1.50700 * 119.99991 * 264.77784 * 3 2 1 5 5 C 1.32991 * 119.99731 * 84.77901 * 3 2 1 6 6 C 1.47101 * 120.00368 * 352.75609 * 5 3 2 7 7 O 1.21614 * 119.99916 * 1.25342 * 6 5 3 8 8 N 1.34770 * 120.00295 * 181.24225 * 6 5 3 9 9 C 1.47156 * 120.98385 * 355.81457 * 8 6 5 10 10 C 1.53295 * 108.38584 * 129.43676 * 9 8 6 11 11 O 1.42951 * 109.26559 * 52.27889 * 10 9 8 12 12 C 1.42966 * 114.17057 * 297.50087 * 11 10 9 13 13 H 1.09004 * 109.50984 * 302.54851 * 12 11 10 14 14 C 1.52998 * 109.51320 * 182.44874 * 12 11 10 15 15 N 1.46900 * 109.47473 * 65.09939 * 14 12 11 16 16 C 1.46894 * 111.00507 * 180.02562 * 15 14 12 17 17 C 1.50699 * 109.47613 * 179.97438 * 16 15 14 18 18 O 1.21293 * 119.99394 * 0.02562 * 17 16 15 19 19 N 1.34767 * 120.00177 * 179.97438 * 17 16 15 20 20 C 1.37104 * 120.00005 * 180.02562 * 19 17 16 21 21 H 1.07994 * 119.99884 * 0.02562 * 20 19 17 22 22 C 1.38948 * 119.99879 * 180.02562 * 20 19 17 23 23 N 1.31412 * 119.99981 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 120.00167 * 359.97438 * 22 20 19 25 25 H 1.48507 * 109.46958 * 90.00360 * 24 22 20 26 26 H 1.48503 * 109.47328 * 210.00344 * 24 22 20 27 27 H 1.48498 * 109.47619 * 330.00587 * 24 22 20 28 28 C 1.47150 * 120.98414 * 175.78398 * 8 6 5 29 29 H 1.08998 * 109.47113 * 299.99576 * 1 2 3 30 30 H 1.08997 * 109.47122 * 60.00009 * 1 2 3 31 31 H 1.09003 * 109.46826 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46881 * 239.99978 * 2 1 3 33 33 H 1.09001 * 109.46908 * 120.00470 * 2 1 3 34 34 H 1.09001 * 109.46958 * 269.99687 * 4 3 2 35 35 H 1.09001 * 109.46980 * 29.99972 * 4 3 2 36 36 H 1.08998 * 109.46897 * 149.99559 * 4 3 2 37 37 H 1.07998 * 119.99615 * 172.76264 * 5 3 2 38 38 H 1.08994 * 109.67983 * 249.16241 * 9 8 6 39 39 H 1.09004 * 109.67516 * 9.71386 * 9 8 6 40 40 H 1.09005 * 109.50751 * 172.22942 * 10 9 8 41 41 H 1.09006 * 109.51419 * 292.32723 * 10 9 8 42 42 H 1.08994 * 109.47350 * 185.10065 * 14 12 11 43 43 H 1.09008 * 109.47200 * 305.10141 * 14 12 11 44 44 H 1.00907 * 110.99621 * 56.04198 * 15 14 12 45 45 H 1.08999 * 109.46885 * 300.00183 * 16 15 14 46 46 H 1.09005 * 109.47124 * 59.99734 * 16 15 14 47 47 H 0.97003 * 120.00027 * 0.02562 * 19 17 16 48 48 H 0.96999 * 120.00374 * 179.97438 * 23 22 20 49 49 H 1.08999 * 109.68186 * 110.84044 * 28 8 6 50 50 H 1.09005 * 109.71338 * 350.30241 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3955 2.0916 -1.2997 5 6 2.1552 2.0826 1.1470 6 6 1.6533 1.4893 2.3960 7 8 1.1465 0.3838 2.3834 8 7 1.7552 2.1707 3.5543 9 6 2.4456 3.4689 3.6113 10 6 1.5255 4.4755 4.3115 11 8 1.0942 3.9306 5.5607 12 6 0.3204 2.7344 5.4416 13 1 -0.5524 2.9261 4.8173 14 6 -0.1343 2.2795 6.8299 15 7 -1.0511 3.2777 7.3964 16 6 -1.5089 2.8738 8.7325 17 6 -2.4449 3.9200 9.2805 18 8 -2.7054 4.9050 8.6225 19 7 -2.9932 3.7607 10.5013 20 6 -3.8451 4.7123 10.9996 21 1 -4.0771 5.5893 10.4137 22 6 -4.4100 4.5482 12.2584 23 7 -5.2270 5.4601 12.7359 24 14 -4.0093 3.0308 13.2715 25 1 -2.8169 3.2995 14.1149 26 1 -5.1657 2.6967 14.1412 27 1 -3.7267 1.8900 12.3639 28 6 1.1787 1.6387 4.7993 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.4480 1.9122 -1.5194 35 1 1.7819 1.6837 -2.1029 36 1 2.2193 3.1640 -1.2166 37 1 2.6233 3.0557 1.1614 38 1 3.3736 3.3668 4.1738 39 1 2.6644 3.8130 2.6004 40 1 2.0688 5.4040 4.4874 41 1 0.6580 4.6748 3.6822 42 1 -0.6462 1.3208 6.7485 43 1 0.7343 2.1736 7.4800 44 1 -1.8331 3.4413 6.7800 45 1 -2.0302 1.9190 8.6647 46 1 -0.6497 2.7722 9.3956 47 1 -2.7851 2.9727 11.0273 48 1 -5.6217 5.3454 13.6145 49 1 1.9792 1.3523 5.4814 50 1 0.5587 0.7705 4.5758 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755002841.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:09 Heat of formation + Delta-G solvation = -109.611758 kcal Electronic energy + Delta-G solvation = -29272.823279 eV Core-core repulsion = 25106.993465 eV Total energy + Delta-G solvation = -4165.829814 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.50945 -40.32661 -39.74134 -37.07463 -36.79381 -35.93019 -35.62522 -33.76222 -33.04021 -31.82242 -29.72133 -29.50978 -28.10040 -26.52087 -25.01381 -24.57902 -23.91295 -22.50327 -21.31171 -21.01337 -20.26119 -19.08695 -18.53720 -17.99821 -17.63549 -17.02356 -16.79135 -16.51121 -16.44356 -16.15973 -15.96898 -15.67957 -15.25953 -15.20185 -14.90084 -14.78562 -14.63326 -14.46392 -14.20447 -14.09681 -13.89874 -13.73780 -13.33022 -13.19945 -13.11820 -13.04441 -12.85635 -12.79703 -12.61846 -12.41038 -12.21360 -12.01834 -11.97491 -11.74868 -11.54620 -11.51418 -11.10269 -10.47063 -10.41462 -10.24786 -10.11891 -9.49089 -9.30833 -8.41184 -6.02292 0.37628 1.30666 1.36366 1.45069 1.86660 1.95726 2.23457 2.24785 2.70357 2.75792 3.14992 3.33779 3.56389 3.75645 3.81382 3.89697 3.95959 4.04188 4.11975 4.17125 4.25752 4.31245 4.40038 4.45093 4.49697 4.53385 4.55126 4.60445 4.64684 4.66244 4.69892 4.80327 4.83615 4.84180 4.96572 4.98455 5.08181 5.20598 5.33568 5.42231 5.52090 5.52544 5.67295 5.88764 6.01679 6.21245 6.36419 6.39022 6.59942 6.88000 7.16059 7.39660 7.96609 8.76517 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.024780 B = 0.001779 C = 0.001739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.670860 B =15733.074653 C =16093.669208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.104 4.104 3 C -0.018 4.018 4 C -0.126 4.126 5 C -0.252 4.252 6 C 0.538 3.462 7 O -0.567 6.567 8 N -0.616 5.616 9 C 0.075 3.925 10 C 0.039 3.961 11 O -0.380 6.380 12 C 0.090 3.910 13 H 0.048 0.952 14 C 0.071 3.929 15 N -0.682 5.682 16 C 0.063 3.937 17 C 0.448 3.552 18 O -0.615 6.615 19 N -0.590 5.590 20 C -0.330 4.330 21 H 0.054 0.946 22 C -0.015 4.015 23 N -0.934 5.934 24 Si 0.966 3.034 25 H -0.257 1.257 26 H -0.275 1.275 27 H -0.231 1.231 28 C 0.092 3.908 29 H 0.039 0.961 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.154 0.846 38 H 0.087 0.913 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.048 0.952 42 H 0.067 0.933 43 H 0.092 0.908 44 H 0.341 0.659 45 H 0.079 0.921 46 H 0.116 0.884 47 H 0.390 0.610 48 H 0.279 0.721 49 H 0.085 0.915 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.525 -13.327 -26.030 36.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.141 4.141 3 C -0.020 4.020 4 C -0.182 4.182 5 C -0.272 4.272 6 C 0.332 3.668 7 O -0.449 6.449 8 N -0.349 5.349 9 C -0.047 4.047 10 C -0.038 4.038 11 O -0.298 6.298 12 C 0.030 3.970 13 H 0.066 0.934 14 C -0.058 4.058 15 N -0.314 5.314 16 C -0.069 4.069 17 C 0.236 3.764 18 O -0.499 6.499 19 N -0.232 5.232 20 C -0.459 4.459 21 H 0.072 0.928 22 C -0.214 4.214 23 N -0.575 5.575 24 Si 0.786 3.214 25 H -0.181 1.181 26 H -0.200 1.200 27 H -0.154 1.154 28 C -0.032 4.032 29 H 0.059 0.941 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.112 0.888 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.171 0.829 38 H 0.106 0.894 39 H 0.140 0.860 40 H 0.141 0.859 41 H 0.067 0.933 42 H 0.085 0.915 43 H 0.110 0.890 44 H 0.159 0.841 45 H 0.097 0.903 46 H 0.133 0.867 47 H 0.226 0.774 48 H 0.089 0.911 49 H 0.103 0.897 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 21.509 -12.672 -25.890 35.965 hybrid contribution -1.132 -0.889 0.663 1.585 sum 20.377 -13.560 -25.227 35.149 Atomic orbital electron populations 1.21506 0.94690 1.01569 1.00877 1.20933 0.96676 0.93502 1.03010 1.22902 0.88571 0.94949 0.95592 1.21082 1.03342 1.01003 0.92785 1.22510 1.09811 1.03746 0.91139 1.19100 0.78698 0.84546 0.84439 1.90725 1.46815 1.20861 1.86495 1.48130 1.56517 1.22188 1.08108 1.22697 0.95809 0.82007 1.04210 1.23169 0.97836 0.97226 0.85554 1.88112 1.71138 1.40937 1.29633 1.22366 0.92776 0.85389 0.96427 0.93364 1.21986 0.97094 0.92831 0.93877 1.59932 1.21998 1.46507 1.02981 1.21636 0.98148 0.94654 0.92477 1.21000 0.84218 0.89191 0.82018 1.90545 1.65187 1.34029 1.60182 1.42018 1.42902 1.21563 1.16729 1.19016 1.23030 1.02241 1.01660 0.92780 1.26132 0.95565 1.02064 0.97630 1.69806 1.31362 1.36868 1.19465 0.85346 0.79129 0.78005 0.78915 1.18131 1.19988 1.15403 1.22117 0.98451 0.96857 0.85748 0.94140 0.92404 0.92817 0.90422 0.90489 0.88806 0.90102 0.89873 0.82858 0.89435 0.85989 0.85870 0.93326 0.91468 0.88964 0.84052 0.90278 0.86657 0.77407 0.91132 0.89655 0.88976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.24 9.34 71.98 0.67 -1.57 16 2 C -0.10 -1.62 5.34 29.85 0.16 -1.46 16 3 C -0.02 -0.22 5.36 -17.62 -0.09 -0.32 16 4 C -0.13 -0.70 10.02 71.24 0.71 0.01 16 5 C -0.25 -3.41 8.96 23.43 0.21 -3.20 16 6 C 0.54 10.75 7.43 86.57 0.64 11.39 16 7 O -0.57 -14.57 10.68 -4.08 -0.04 -14.61 16 8 N -0.62 -10.97 3.02 -821.62 -2.48 -13.46 16 9 C 0.07 0.91 6.56 86.35 0.57 1.48 16 10 C 0.04 0.65 6.98 72.08 0.50 1.15 16 11 O -0.38 -9.23 10.34 -148.98 -1.54 -10.77 16 12 C 0.09 1.96 2.96 30.69 0.09 2.05 16 13 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 14 C 0.07 1.56 5.36 86.30 0.46 2.03 16 15 N -0.68 -21.17 6.08 -517.94 -3.15 -24.32 16 16 C 0.06 1.97 6.17 85.56 0.53 2.50 16 17 C 0.45 20.78 7.82 87.66 0.69 21.47 16 18 O -0.62 -35.22 15.78 -3.07 -0.05 -35.27 16 19 N -0.59 -28.37 5.09 -307.00 -1.56 -29.94 16 20 C -0.33 -19.71 10.16 84.04 0.85 -18.86 16 21 H 0.05 3.85 7.39 -2.91 -0.02 3.82 16 22 C -0.02 -0.86 5.50 84.93 0.47 -0.40 16 23 N -0.93 -56.98 13.96 21.66 0.30 -56.68 16 24 Si 0.97 39.18 27.74 68.60 1.90 41.08 16 25 H -0.26 -9.88 7.11 99.48 0.71 -9.18 16 26 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 27 H -0.23 -7.85 6.52 99.48 0.65 -7.20 16 28 C 0.09 1.74 5.91 86.35 0.51 2.25 16 29 H 0.04 0.91 6.36 -2.39 -0.02 0.89 16 30 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.08 0.90 8.09 -2.39 -0.02 0.88 16 33 H 0.08 1.61 5.88 -2.39 -0.01 1.60 16 34 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 35 H 0.08 0.38 8.12 -2.39 -0.02 0.36 16 36 H 0.08 0.32 8.07 -2.39 -0.02 0.30 16 37 H 0.15 1.16 5.90 -2.91 -0.02 1.14 16 38 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.12 0.80 5.39 -2.38 -0.01 0.79 16 40 H 0.12 1.56 8.14 -2.38 -0.02 1.54 16 41 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 42 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.09 1.88 8.14 -2.38 -0.02 1.86 16 44 H 0.34 11.42 8.43 -89.69 -0.76 10.66 16 45 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 46 H 0.12 3.05 8.14 -2.38 -0.02 3.03 16 47 H 0.39 15.43 5.76 -92.71 -0.53 14.89 16 48 H 0.28 15.53 8.31 -92.71 -0.77 14.76 16 49 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 50 H 0.09 1.91 7.11 -2.38 -0.02 1.89 16 Total: -1.00 -84.27 399.79 -0.03 -84.30 By element: Atomic # 1 Polarization: 41.54 SS G_CDS: -0.39 Total: 41.15 kcal Atomic # 6 Polarization: 11.55 SS G_CDS: 6.97 Total: 18.52 kcal Atomic # 7 Polarization: -117.50 SS G_CDS: -6.89 Total: -124.39 kcal Atomic # 8 Polarization: -59.03 SS G_CDS: -1.63 Total: -60.66 kcal Atomic # 14 Polarization: 39.18 SS G_CDS: 1.90 Total: 41.08 kcal Total: -84.27 -0.03 -84.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755002841.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.312 kcal (2) G-P(sol) polarization free energy of solvation -84.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds