Wall clock time and date at job start Sat Apr 11 2020 05:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50699 * 109.47133 * 2 1 4 4 C 1.50699 * 120.00311 * 275.00084 * 3 2 1 5 5 C 1.32996 * 119.99964 * 95.00323 * 3 2 1 6 6 C 1.47098 * 120.00268 * 172.00887 * 5 3 2 7 7 O 1.21623 * 119.99818 * 353.85247 * 6 5 3 8 8 N 1.34770 * 120.00251 * 173.85418 * 6 5 3 9 9 C 1.47156 * 120.98385 * 174.62803 * 8 6 5 10 10 C 1.53295 * 108.38617 * 230.26383 * 9 8 6 11 11 O 1.42957 * 109.22470 * 307.69820 * 10 9 8 12 12 C 1.42963 * 114.16597 * 62.57966 * 11 10 9 13 13 H 1.09003 * 109.51322 * 57.34292 * 12 11 10 14 14 C 1.53001 * 109.51341 * 177.44508 * 12 11 10 15 15 N 1.46901 * 109.47177 * 300.00388 * 14 12 11 16 16 C 1.46900 * 110.99995 * 180.02562 * 15 14 12 17 17 C 1.50701 * 109.47069 * 179.97438 * 16 15 14 18 18 O 1.21295 * 119.99747 * 359.97438 * 17 16 15 19 19 N 1.34771 * 119.99876 * 179.97438 * 17 16 15 20 20 C 1.37100 * 119.99704 * 179.97438 * 19 17 16 21 21 H 1.07998 * 120.00432 * 359.97438 * 20 19 17 22 22 C 1.38951 * 119.99799 * 179.97438 * 20 19 17 23 23 N 1.31413 * 120.00270 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99920 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47110 * 59.99994 * 24 22 20 26 26 H 1.48498 * 109.46836 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.47039 * 300.00074 * 24 22 20 28 28 C 1.47155 * 120.98359 * 354.35171 * 8 6 5 29 29 H 1.08994 * 109.46946 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46671 * 299.99859 * 1 2 3 31 31 H 1.08996 * 109.46731 * 59.99885 * 1 2 3 32 32 H 1.09003 * 109.47081 * 240.00035 * 2 1 3 33 33 H 1.08999 * 109.47191 * 120.00313 * 2 1 3 34 34 H 1.09001 * 109.47588 * 263.61805 * 4 3 2 35 35 H 1.09006 * 109.47004 * 23.61635 * 4 3 2 36 36 H 1.08994 * 109.47172 * 143.61162 * 4 3 2 37 37 H 1.08003 * 119.99666 * 352.00203 * 5 3 2 38 38 H 1.08997 * 109.68198 * 349.99206 * 9 8 6 39 39 H 1.09000 * 109.67889 * 110.50312 * 9 8 6 40 40 H 1.09000 * 109.51288 * 67.62250 * 10 9 8 41 41 H 1.09001 * 109.50818 * 187.72223 * 10 9 8 42 42 H 1.09003 * 109.47217 * 60.00113 * 14 12 11 43 43 H 1.08994 * 109.47205 * 179.97438 * 14 12 11 44 44 H 1.00897 * 111.00019 * 56.04363 * 15 14 12 45 45 H 1.08999 * 109.46939 * 299.99639 * 16 15 14 46 46 H 1.08992 * 109.47440 * 59.99759 * 16 15 14 47 47 H 0.96995 * 120.00231 * 359.97438 * 19 17 16 48 48 H 0.97002 * 119.99942 * 179.97438 * 23 22 20 49 49 H 1.08997 * 109.68147 * 249.46611 * 28 8 6 50 50 H 1.09006 * 109.68047 * 10.01225 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.1763 2.1692 -1.3001 5 6 2.3488 2.0143 1.1474 6 6 3.0024 3.3320 1.1382 7 8 3.3546 3.8287 0.0854 8 7 3.2109 3.9889 2.2963 9 6 3.9658 5.2518 2.3256 10 6 5.0448 5.1451 3.4092 11 8 4.4387 4.7391 4.6387 12 6 3.8268 3.4479 4.5912 13 1 4.5674 2.7046 4.2960 14 6 3.2707 3.0948 5.9721 15 7 4.3650 3.0817 6.9520 16 6 3.8674 2.7450 8.2925 17 6 5.0158 2.7408 9.2683 18 8 6.1385 2.9930 8.8846 19 7 4.7954 2.4568 10.5672 20 6 5.8403 2.4524 11.4547 21 1 6.8401 2.6761 11.1130 22 6 5.6130 2.1602 12.7940 23 7 4.3966 1.8875 13.2098 24 14 7.0368 2.1535 14.0033 25 1 7.6686 3.4971 14.0315 26 1 6.5334 1.8152 15.3587 27 1 8.0402 1.1436 13.5809 28 6 2.6853 3.4677 3.5682 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3632 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.2079 2.1021 -1.6457 35 1 1.5138 1.7312 -2.0467 36 1 1.9112 3.2155 -1.1483 37 1 2.1256 1.5287 2.0859 38 1 4.4344 5.4220 1.3564 39 1 3.2922 6.0768 2.5575 40 1 5.7899 4.4080 3.1098 41 1 5.5247 6.1147 3.5418 42 1 2.5288 3.8374 6.2658 43 1 2.8039 2.1105 5.9350 44 1 4.8549 3.9638 6.9588 45 1 3.1295 3.4850 8.6025 46 1 3.4055 1.7581 8.2713 47 1 3.8976 2.2555 10.8740 48 1 4.2380 1.6831 14.1447 49 1 1.8829 4.1129 3.9257 50 1 2.3061 2.4563 3.4217 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755002842.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:14 Heat of formation + Delta-G solvation = -96.699934 kcal Electronic energy + Delta-G solvation = -29120.302485 eV Core-core repulsion = 24955.032570 eV Total energy + Delta-G solvation = -4165.269915 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.71477 -38.99486 -38.18504 -36.58915 -35.47410 -34.95835 -33.84437 -32.13591 -31.28898 -31.13287 -29.31271 -27.78695 -27.06690 -25.10614 -24.71255 -23.61457 -22.94599 -21.45175 -20.24730 -19.22606 -18.43954 -17.89728 -17.76599 -16.89987 -16.32716 -16.10329 -15.79563 -15.34240 -15.22995 -15.08617 -14.74359 -14.58708 -14.39990 -14.20585 -14.08247 -13.78009 -13.43687 -13.30613 -13.20974 -12.96809 -12.82301 -12.64055 -12.46408 -12.10043 -11.82626 -11.75217 -11.69401 -11.62537 -11.46702 -11.34653 -11.33914 -11.00506 -10.86944 -10.42858 -10.32020 -10.19610 -9.79894 -9.51778 -9.48094 -8.77414 -8.43395 -8.04309 -7.93805 -6.39893 -3.80576 1.00855 2.58074 2.95245 3.21659 3.26973 3.31661 3.50584 3.93166 3.99222 4.13306 4.25363 4.37530 4.50568 4.62053 4.70404 4.78383 4.81487 4.81940 4.89930 4.99583 5.08274 5.12150 5.21165 5.21815 5.24663 5.27061 5.36438 5.42787 5.43534 5.46725 5.49501 5.56090 5.66407 5.70382 5.74203 5.77197 5.85797 5.98990 6.05268 6.15054 6.21670 6.28269 6.95491 7.05799 7.22043 7.56869 7.72672 7.88642 8.08337 8.63625 9.19881 9.56455 10.08322 10.77822 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018715 B = 0.001812 C = 0.001696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.773775 B =15452.313832 C =16503.804762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.099 4.099 3 C -0.022 4.022 4 C -0.123 4.123 5 C -0.240 4.240 6 C 0.551 3.449 7 O -0.542 6.542 8 N -0.613 5.613 9 C 0.078 3.922 10 C 0.051 3.949 11 O -0.371 6.371 12 C 0.080 3.920 13 H 0.075 0.925 14 C 0.069 3.931 15 N -0.666 5.666 16 C 0.050 3.950 17 C 0.441 3.559 18 O -0.582 6.582 19 N -0.564 5.564 20 C -0.299 4.299 21 H 0.102 0.898 22 C 0.022 3.978 23 N -0.903 5.903 24 Si 0.931 3.069 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.274 1.274 28 C 0.079 3.921 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.055 0.945 36 H 0.086 0.914 37 H 0.130 0.870 38 H 0.100 0.900 39 H 0.074 0.926 40 H 0.057 0.943 41 H 0.107 0.893 42 H 0.037 0.963 43 H 0.086 0.914 44 H 0.359 0.641 45 H 0.044 0.956 46 H 0.085 0.915 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.079 0.921 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.900 -0.100 -25.683 27.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.137 4.137 3 C -0.024 4.024 4 C -0.179 4.179 5 C -0.260 4.260 6 C 0.344 3.656 7 O -0.422 6.422 8 N -0.346 5.346 9 C -0.045 4.045 10 C -0.027 4.027 11 O -0.289 6.289 12 C 0.021 3.979 13 H 0.093 0.907 14 C -0.061 4.061 15 N -0.300 5.300 16 C -0.082 4.082 17 C 0.227 3.773 18 O -0.466 6.466 19 N -0.201 5.201 20 C -0.429 4.429 21 H 0.120 0.880 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.045 4.045 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.074 0.926 36 H 0.104 0.896 37 H 0.147 0.853 38 H 0.118 0.882 39 H 0.093 0.907 40 H 0.075 0.925 41 H 0.125 0.875 42 H 0.055 0.945 43 H 0.104 0.896 44 H 0.179 0.821 45 H 0.062 0.938 46 H 0.104 0.896 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.097 0.903 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -9.827 -0.229 -26.263 28.042 hybrid contribution -0.428 0.479 1.114 1.286 sum -10.255 0.250 -25.149 27.161 Atomic orbital electron populations 1.21724 0.94070 1.02254 1.02435 1.20806 0.96788 0.92450 1.03625 1.22604 0.89627 0.94773 0.95366 1.21119 1.02467 1.00939 0.93374 1.22423 1.07883 0.96641 0.99076 1.18558 0.79120 0.85165 0.82768 1.90754 1.52438 1.69058 1.29961 1.47992 1.55241 1.24193 1.07217 1.22319 0.94917 0.85799 1.01429 1.22949 0.94002 1.01585 0.84140 1.87981 1.73800 1.34121 1.33004 1.22557 0.94131 0.86163 0.95078 0.90705 1.21907 0.93294 1.00884 0.90025 1.60042 1.24639 1.40589 1.04702 1.21674 0.96243 1.01312 0.89000 1.19805 0.89815 0.84521 0.83206 1.90530 1.24075 1.53956 1.78023 1.41850 1.10984 1.61151 1.06127 1.19659 0.90511 1.44518 0.88188 0.87982 1.25259 0.97632 0.97212 0.97870 1.69605 1.19961 1.47577 1.17269 0.85913 0.80573 0.78943 0.78757 1.19935 1.21003 1.19901 1.22514 0.97097 1.01230 0.83646 0.91943 0.92309 0.92360 0.90184 0.90435 0.90188 0.92602 0.89551 0.85262 0.88205 0.90744 0.92484 0.87494 0.94488 0.89580 0.82051 0.93809 0.89632 0.77467 0.91858 0.90302 0.88354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.90 37.16 0.37 -0.34 16 2 C -0.10 -0.54 6.08 -27.88 -0.17 -0.71 16 3 C -0.02 -0.17 5.36 -101.17 -0.54 -0.71 16 4 C -0.12 -1.01 8.45 36.01 0.30 -0.70 16 5 C -0.24 -2.04 8.92 -37.81 -0.34 -2.38 16 6 C 0.55 6.03 7.49 -12.67 -0.09 5.93 16 7 O -0.54 -7.22 12.81 5.26 0.07 -7.15 16 8 N -0.61 -6.08 3.02 -173.67 -0.52 -6.60 16 9 C 0.08 0.73 6.62 -3.53 -0.02 0.71 16 10 C 0.05 0.50 6.98 37.31 0.26 0.76 16 11 O -0.37 -4.53 9.72 -35.23 -0.34 -4.87 16 12 C 0.08 0.86 3.05 -26.58 -0.08 0.78 16 13 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 14 C 0.07 0.80 5.43 -3.82 -0.02 0.78 16 15 N -0.67 -10.89 6.12 -115.06 -0.70 -11.59 16 16 C 0.05 0.88 6.17 -4.98 -0.03 0.85 16 17 C 0.44 10.52 7.82 -10.99 -0.09 10.43 16 18 O -0.58 -16.07 15.78 5.54 0.09 -15.98 16 19 N -0.56 -14.38 5.29 -10.96 -0.06 -14.44 16 20 C -0.30 -8.40 9.68 -14.93 -0.14 -8.55 16 21 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.58 13.05 55.50 0.72 -23.85 16 24 Si 0.93 21.16 29.55 -169.99 -5.02 16.13 16 25 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 28 C 0.08 0.66 5.85 -3.53 -0.02 0.64 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 0.39 8.04 -51.93 -0.42 -0.02 16 34 H 0.08 0.72 7.98 -51.93 -0.41 0.31 16 35 H 0.06 0.35 8.09 -51.93 -0.42 -0.07 16 36 H 0.09 0.87 6.27 -51.93 -0.33 0.55 16 37 H 0.13 0.86 5.94 -52.48 -0.31 0.55 16 38 H 0.10 0.97 7.13 -51.93 -0.37 0.60 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.11 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 44 H 0.36 6.44 7.83 -39.29 -0.31 6.13 16 45 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 47 H 0.39 9.49 7.90 -40.82 -0.32 9.17 16 48 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 49 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 50 H 0.10 0.64 5.41 -51.93 -0.28 0.36 16 LS Contribution 405.83 15.07 6.12 6.12 Total: -1.00 -33.70 405.83 -8.55 -42.25 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: -8.18 Total: 12.00 kcal Atomic # 6 Polarization: 8.70 SS G_CDS: -0.71 Total: 7.99 kcal Atomic # 7 Polarization: -55.92 SS G_CDS: -0.56 Total: -56.48 kcal Atomic # 8 Polarization: -27.82 SS G_CDS: -0.19 Total: -28.00 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.70 -8.55 -42.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755002842.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.447 kcal (2) G-P(sol) polarization free energy of solvation -33.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds