Wall clock time and date at job start Sat Apr 11 2020 05:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50699 * 109.47133 * 2 1 4 4 C 1.50699 * 120.00311 * 275.00084 * 3 2 1 5 5 C 1.32996 * 119.99964 * 95.00323 * 3 2 1 6 6 C 1.47098 * 120.00268 * 172.00887 * 5 3 2 7 7 O 1.21623 * 119.99818 * 353.85247 * 6 5 3 8 8 N 1.34770 * 120.00251 * 173.85418 * 6 5 3 9 9 C 1.47156 * 120.98385 * 174.62803 * 8 6 5 10 10 C 1.53295 * 108.38617 * 230.26383 * 9 8 6 11 11 O 1.42957 * 109.22470 * 307.69820 * 10 9 8 12 12 C 1.42963 * 114.16597 * 62.57966 * 11 10 9 13 13 H 1.09003 * 109.51322 * 57.34292 * 12 11 10 14 14 C 1.53001 * 109.51341 * 177.44508 * 12 11 10 15 15 N 1.46901 * 109.47177 * 300.00388 * 14 12 11 16 16 C 1.46900 * 110.99995 * 180.02562 * 15 14 12 17 17 C 1.50701 * 109.47069 * 179.97438 * 16 15 14 18 18 O 1.21295 * 119.99747 * 359.97438 * 17 16 15 19 19 N 1.34771 * 119.99876 * 179.97438 * 17 16 15 20 20 C 1.37100 * 119.99704 * 179.97438 * 19 17 16 21 21 H 1.07998 * 120.00432 * 359.97438 * 20 19 17 22 22 C 1.38951 * 119.99799 * 179.97438 * 20 19 17 23 23 N 1.31413 * 120.00270 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99920 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47110 * 59.99994 * 24 22 20 26 26 H 1.48498 * 109.46836 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.47039 * 300.00074 * 24 22 20 28 28 C 1.47155 * 120.98359 * 354.35171 * 8 6 5 29 29 H 1.08994 * 109.46946 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46671 * 299.99859 * 1 2 3 31 31 H 1.08996 * 109.46731 * 59.99885 * 1 2 3 32 32 H 1.09003 * 109.47081 * 240.00035 * 2 1 3 33 33 H 1.08999 * 109.47191 * 120.00313 * 2 1 3 34 34 H 1.09001 * 109.47588 * 263.61805 * 4 3 2 35 35 H 1.09006 * 109.47004 * 23.61635 * 4 3 2 36 36 H 1.08994 * 109.47172 * 143.61162 * 4 3 2 37 37 H 1.08003 * 119.99666 * 352.00203 * 5 3 2 38 38 H 1.08997 * 109.68198 * 349.99206 * 9 8 6 39 39 H 1.09000 * 109.67889 * 110.50312 * 9 8 6 40 40 H 1.09000 * 109.51288 * 67.62250 * 10 9 8 41 41 H 1.09001 * 109.50818 * 187.72223 * 10 9 8 42 42 H 1.09003 * 109.47217 * 60.00113 * 14 12 11 43 43 H 1.08994 * 109.47205 * 179.97438 * 14 12 11 44 44 H 1.00897 * 111.00019 * 56.04363 * 15 14 12 45 45 H 1.08999 * 109.46939 * 299.99639 * 16 15 14 46 46 H 1.08992 * 109.47440 * 59.99759 * 16 15 14 47 47 H 0.96995 * 120.00231 * 359.97438 * 19 17 16 48 48 H 0.97002 * 119.99942 * 179.97438 * 23 22 20 49 49 H 1.08997 * 109.68147 * 249.46611 * 28 8 6 50 50 H 1.09006 * 109.68047 * 10.01225 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.1763 2.1692 -1.3001 5 6 2.3488 2.0143 1.1474 6 6 3.0024 3.3320 1.1382 7 8 3.3546 3.8287 0.0854 8 7 3.2109 3.9889 2.2963 9 6 3.9658 5.2518 2.3256 10 6 5.0448 5.1451 3.4092 11 8 4.4387 4.7391 4.6387 12 6 3.8268 3.4479 4.5912 13 1 4.5674 2.7046 4.2960 14 6 3.2707 3.0948 5.9721 15 7 4.3650 3.0817 6.9520 16 6 3.8674 2.7450 8.2925 17 6 5.0158 2.7408 9.2683 18 8 6.1385 2.9930 8.8846 19 7 4.7954 2.4568 10.5672 20 6 5.8403 2.4524 11.4547 21 1 6.8401 2.6761 11.1130 22 6 5.6130 2.1602 12.7940 23 7 4.3966 1.8875 13.2098 24 14 7.0368 2.1535 14.0033 25 1 7.6686 3.4971 14.0315 26 1 6.5334 1.8152 15.3587 27 1 8.0402 1.1436 13.5809 28 6 2.6853 3.4677 3.5682 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3632 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.2079 2.1021 -1.6457 35 1 1.5138 1.7312 -2.0467 36 1 1.9112 3.2155 -1.1483 37 1 2.1256 1.5287 2.0859 38 1 4.4344 5.4220 1.3564 39 1 3.2922 6.0768 2.5575 40 1 5.7899 4.4080 3.1098 41 1 5.5247 6.1147 3.5418 42 1 2.5288 3.8374 6.2658 43 1 2.8039 2.1105 5.9350 44 1 4.8549 3.9638 6.9588 45 1 3.1295 3.4850 8.6025 46 1 3.4055 1.7581 8.2713 47 1 3.8976 2.2555 10.8740 48 1 4.2380 1.6831 14.1447 49 1 1.8829 4.1129 3.9257 50 1 2.3061 2.4563 3.4217 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755002842.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:13 Heat of formation + Delta-G solvation = -121.297354 kcal Electronic energy + Delta-G solvation = -29121.369109 eV Core-core repulsion = 24955.032570 eV Total energy + Delta-G solvation = -4166.336539 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.50756 -40.17308 -39.70455 -37.22470 -36.68465 -35.86036 -35.75590 -33.31451 -32.95030 -31.80358 -30.16409 -28.77843 -28.11012 -26.62372 -25.34233 -24.82455 -23.76726 -22.32265 -21.07708 -20.91965 -19.89484 -19.13395 -18.54274 -17.85176 -17.75484 -16.98415 -16.88782 -16.53125 -16.33851 -16.09197 -15.87743 -15.81564 -15.39681 -15.37608 -14.90556 -14.85021 -14.63406 -14.39425 -14.30367 -13.86435 -13.56186 -13.48195 -13.32202 -13.23106 -13.10186 -13.02928 -12.81694 -12.61048 -12.42151 -12.36555 -12.28594 -12.21381 -12.11324 -11.74939 -11.69319 -11.49196 -11.19112 -10.58968 -10.33322 -10.16928 -10.00103 -9.53915 -9.29540 -8.45285 -5.93891 0.34761 1.40821 1.42567 1.53463 1.84162 2.07492 2.19776 2.30497 2.70262 2.91518 3.22022 3.45248 3.52461 3.78040 3.82420 3.88132 3.98642 4.07607 4.11176 4.21551 4.29991 4.35237 4.37157 4.43761 4.49168 4.53058 4.59328 4.61504 4.64001 4.69606 4.75708 4.77703 4.82504 4.83916 4.98645 5.02670 5.09146 5.13085 5.33283 5.37591 5.42015 5.54394 5.61085 5.89333 6.09113 6.17631 6.31182 6.41081 6.62213 7.09634 7.14212 7.58186 8.14142 8.71777 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018715 B = 0.001812 C = 0.001696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.773775 B =15452.313832 C =16503.804762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.097 4.097 3 C -0.016 4.016 4 C -0.121 4.121 5 C -0.252 4.252 6 C 0.542 3.458 7 O -0.576 6.576 8 N -0.615 5.615 9 C 0.081 3.919 10 C 0.053 3.947 11 O -0.392 6.392 12 C 0.081 3.919 13 H 0.060 0.940 14 C 0.071 3.929 15 N -0.684 5.684 16 C 0.066 3.934 17 C 0.436 3.564 18 O -0.626 6.626 19 N -0.573 5.573 20 C -0.335 4.335 21 H 0.077 0.923 22 C -0.013 4.013 23 N -0.919 5.919 24 Si 0.993 3.007 25 H -0.273 1.273 26 H -0.269 1.269 27 H -0.273 1.273 28 C 0.085 3.915 29 H 0.073 0.927 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.152 0.848 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.047 0.953 41 H 0.121 0.879 42 H 0.050 0.950 43 H 0.112 0.888 44 H 0.346 0.654 45 H 0.067 0.933 46 H 0.111 0.889 47 H 0.397 0.603 48 H 0.278 0.722 49 H 0.090 0.910 50 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.600 -1.186 -25.620 28.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.134 4.134 3 C -0.018 4.018 4 C -0.177 4.177 5 C -0.272 4.272 6 C 0.336 3.664 7 O -0.458 6.458 8 N -0.348 5.348 9 C -0.042 4.042 10 C -0.025 4.025 11 O -0.311 6.311 12 C 0.023 3.977 13 H 0.078 0.922 14 C -0.058 4.058 15 N -0.316 5.316 16 C -0.067 4.067 17 C 0.223 3.777 18 O -0.512 6.512 19 N -0.210 5.210 20 C -0.465 4.465 21 H 0.095 0.905 22 C -0.212 4.212 23 N -0.560 5.560 24 Si 0.816 3.184 25 H -0.198 1.198 26 H -0.194 1.194 27 H -0.198 1.198 28 C -0.038 4.038 29 H 0.092 0.908 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.107 0.893 33 H 0.104 0.896 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.169 0.831 38 H 0.111 0.889 39 H 0.101 0.899 40 H 0.066 0.934 41 H 0.139 0.861 42 H 0.068 0.932 43 H 0.130 0.870 44 H 0.165 0.835 45 H 0.085 0.915 46 H 0.129 0.871 47 H 0.231 0.769 48 H 0.087 0.913 49 H 0.109 0.891 50 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -11.572 -1.328 -26.193 28.666 hybrid contribution 0.101 0.835 1.013 1.317 sum -11.471 -0.492 -25.180 27.674 Atomic orbital electron populations 1.21724 0.93346 1.02951 1.02336 1.20853 0.97267 0.90769 1.04499 1.22851 0.88509 0.95748 0.94705 1.21054 1.02135 1.00036 0.94507 1.22518 1.08607 0.95702 1.00375 1.19042 0.78936 0.85903 0.82486 1.90739 1.54005 1.69983 1.31097 1.48100 1.54975 1.24128 1.07598 1.22277 0.94952 0.86151 1.00816 1.23010 0.93869 1.01988 0.83603 1.87951 1.74211 1.34771 1.34142 1.22549 0.94536 0.85293 0.95369 0.92179 1.22055 0.92121 1.02783 0.88877 1.60046 1.26770 1.40042 1.04780 1.21549 0.93605 1.03484 0.88030 1.20962 0.91020 0.82270 0.83416 1.90497 1.26580 1.55364 1.78771 1.41915 1.10640 1.61753 1.06692 1.19624 0.90450 1.46811 0.89610 0.90475 1.26026 1.00225 0.96157 0.98832 1.69661 1.21177 1.47194 1.17958 0.84998 0.77597 0.78813 0.76975 1.19812 1.19391 1.19782 1.22561 0.96154 1.02892 0.82177 0.90844 0.92443 0.92487 0.89318 0.89604 0.91373 0.90630 0.91672 0.83109 0.88929 0.89948 0.93446 0.86083 0.93177 0.87037 0.83517 0.91503 0.87092 0.76866 0.91282 0.89144 0.85971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.90 71.98 0.71 -0.32 16 2 C -0.10 -0.83 6.08 29.85 0.18 -0.64 16 3 C -0.02 -0.23 5.36 -17.62 -0.09 -0.32 16 4 C -0.12 -1.95 8.45 71.24 0.60 -1.34 16 5 C -0.25 -3.90 8.92 23.43 0.21 -3.69 16 6 C 0.54 11.61 7.49 86.57 0.65 12.26 16 7 O -0.58 -15.69 12.81 -4.10 -0.05 -15.74 16 8 N -0.62 -11.64 3.02 -821.61 -2.48 -14.12 16 9 C 0.08 1.50 6.62 86.35 0.57 2.07 16 10 C 0.05 1.03 6.98 72.08 0.50 1.53 16 11 O -0.39 -9.33 9.72 -148.98 -1.45 -10.78 16 12 C 0.08 1.63 3.05 30.69 0.09 1.72 16 13 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 14 C 0.07 1.45 5.43 86.30 0.47 1.92 16 15 N -0.68 -21.45 6.12 -517.94 -3.17 -24.62 16 16 C 0.07 2.18 6.17 85.56 0.53 2.71 16 17 C 0.44 20.85 7.82 87.66 0.69 21.54 16 18 O -0.63 -35.38 15.78 -3.08 -0.05 -35.42 16 19 N -0.57 -29.40 5.29 -306.99 -1.62 -31.02 16 20 C -0.34 -19.17 9.68 84.04 0.81 -18.36 16 21 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 22 C -0.01 -0.67 5.50 84.93 0.47 -0.21 16 23 N -0.92 -49.38 13.05 21.66 0.28 -49.10 16 24 Si 0.99 43.04 29.55 68.60 2.03 45.07 16 25 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 26 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 27 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 28 C 0.09 1.24 5.85 86.35 0.50 1.75 16 29 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.09 0.62 8.04 -2.39 -0.02 0.61 16 34 H 0.07 1.25 7.98 -2.39 -0.02 1.24 16 35 H 0.07 0.86 8.09 -2.38 -0.02 0.85 16 36 H 0.06 1.35 6.27 -2.39 -0.01 1.33 16 37 H 0.15 1.57 5.94 -2.91 -0.02 1.55 16 38 H 0.09 1.86 7.13 -2.39 -0.02 1.84 16 39 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.35 12.35 7.83 -89.70 -0.70 11.65 16 45 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 46 H 0.11 3.16 8.14 -2.39 -0.02 3.14 16 47 H 0.40 19.16 7.90 -92.71 -0.73 18.43 16 48 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 49 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 50 H 0.12 1.18 5.41 -2.38 -0.01 1.17 16 Total: -1.00 -74.47 405.83 -0.10 -74.57 By element: Atomic # 1 Polarization: 41.03 SS G_CDS: -0.48 Total: 40.56 kcal Atomic # 6 Polarization: 13.72 SS G_CDS: 6.89 Total: 20.62 kcal Atomic # 7 Polarization: -111.87 SS G_CDS: -6.99 Total: -118.86 kcal Atomic # 8 Polarization: -60.40 SS G_CDS: -1.55 Total: -61.95 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -74.47 -0.10 -74.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755002842.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.729 kcal (2) G-P(sol) polarization free energy of solvation -74.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds