Wall clock time and date at job start Sat Apr 11 2020 05:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50704 * 109.47197 * 2 1 4 4 C 1.50700 * 119.99949 * 275.00000 * 3 2 1 5 5 C 1.32990 * 119.99912 * 94.99494 * 3 2 1 6 6 C 1.47103 * 120.00024 * 171.98930 * 5 3 2 7 7 O 1.21617 * 119.99988 * 353.85291 * 6 5 3 8 8 N 1.34776 * 119.99927 * 173.84427 * 6 5 3 9 9 C 1.47146 * 120.98429 * 354.20348 * 8 6 5 10 10 C 1.53300 * 108.38138 * 129.44874 * 9 8 6 11 11 O 1.42961 * 109.22288 * 52.30872 * 10 9 8 12 12 C 1.42968 * 114.16269 * 297.41687 * 11 10 9 13 13 H 1.08998 * 109.51087 * 302.60515 * 12 11 10 14 14 C 1.53004 * 109.50995 * 182.50819 * 12 11 10 15 15 N 1.46896 * 109.47537 * 65.09838 * 14 12 11 16 16 C 1.46895 * 111.00083 * 180.02562 * 15 14 12 17 17 C 1.50701 * 109.47389 * 180.02562 * 16 15 14 18 18 O 1.21288 * 119.99706 * 0.02562 * 17 16 15 19 19 N 1.34775 * 120.00276 * 179.97438 * 17 16 15 20 20 C 1.37091 * 119.99988 * 179.97438 * 19 17 16 21 21 H 1.08004 * 120.00123 * 0.02562 * 20 19 17 22 22 C 1.38952 * 120.00256 * 180.02562 * 20 19 17 23 23 N 1.31412 * 119.99570 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00344 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.47114 * 89.99789 * 24 22 20 26 26 H 1.48498 * 109.47187 * 209.99837 * 24 22 20 27 27 H 1.48501 * 109.47194 * 329.99549 * 24 22 20 28 28 C 1.47176 * 120.93898 * 174.15888 * 8 6 5 29 29 H 1.09003 * 109.46949 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47215 * 299.99769 * 1 2 3 31 31 H 1.08996 * 109.47277 * 60.00490 * 1 2 3 32 32 H 1.09003 * 109.47528 * 239.99534 * 2 1 3 33 33 H 1.09008 * 109.47419 * 119.99894 * 2 1 3 34 34 H 1.08998 * 109.47065 * 263.61125 * 4 3 2 35 35 H 1.09001 * 109.46742 * 23.61334 * 4 3 2 36 36 H 1.08997 * 109.46867 * 143.61189 * 4 3 2 37 37 H 1.08002 * 120.00150 * 351.99667 * 5 3 2 38 38 H 1.08996 * 109.68199 * 9.73323 * 9 8 6 39 39 H 1.08997 * 109.71889 * 249.18771 * 9 8 6 40 40 H 1.08999 * 109.51570 * 292.37812 * 10 9 8 41 41 H 1.09003 * 109.51235 * 172.22646 * 10 9 8 42 42 H 1.08996 * 109.46869 * 185.10331 * 14 12 11 43 43 H 1.09003 * 109.46798 * 305.09382 * 14 12 11 44 44 H 1.00899 * 110.99947 * 56.04359 * 15 14 12 45 45 H 1.09008 * 109.47383 * 300.00104 * 16 15 14 46 46 H 1.08999 * 109.47582 * 59.99811 * 16 15 14 47 47 H 0.96998 * 120.00176 * 0.02562 * 19 17 16 48 48 H 0.97003 * 119.99816 * 179.97438 * 23 22 20 49 49 H 1.08996 * 109.64397 * 110.80736 * 28 8 6 50 50 H 1.09002 * 109.72757 * 350.24154 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.1762 2.1691 -1.3001 5 6 2.3485 2.0143 1.1474 6 6 3.0025 3.3319 1.1381 7 8 3.3552 3.8284 0.0854 8 7 3.2108 3.9890 2.2963 9 6 2.6817 3.4699 3.5674 10 6 3.8232 3.4411 4.5903 11 8 4.4438 4.7280 4.6393 12 6 5.0525 5.1314 3.4102 13 1 5.7932 4.3901 3.1103 14 6 5.7347 6.4879 3.5988 15 7 6.8439 6.3500 4.5520 16 6 7.5233 7.6359 4.7586 17 6 8.6530 7.4553 5.7396 18 8 8.8709 6.3627 6.2190 19 7 9.4217 8.5075 6.0834 20 6 10.4490 8.3433 6.9762 21 1 10.6426 7.3705 7.4037 22 6 11.2413 9.4282 7.3311 23 7 11.0061 10.6117 6.8105 24 14 12.6416 9.2042 8.5471 25 1 13.8838 8.8544 7.8125 26 1 12.8505 10.4673 9.2995 27 1 12.3035 8.1130 9.4958 28 6 3.9750 5.2464 2.3260 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.2078 2.1021 -1.6456 35 1 1.5138 1.7311 -2.0467 36 1 1.9111 3.2154 -1.1484 37 1 2.1252 1.5289 2.0859 38 1 2.2957 2.4613 3.4198 39 1 1.8836 4.1196 3.9263 40 1 4.5587 2.6932 4.2942 41 1 3.4247 3.1915 5.5737 42 1 6.1200 6.8371 2.6409 43 1 5.0121 7.2075 3.9838 44 1 7.4950 5.6412 4.2490 45 1 7.9211 7.9935 3.8088 46 1 6.8130 8.3632 5.1519 47 1 9.2477 9.3813 5.6998 48 1 11.5589 11.3692 7.0586 49 1 3.3071 6.0757 2.5588 50 1 4.4455 5.4140 1.3572 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755002843.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:18 Heat of formation + Delta-G solvation = -94.055526 kcal Electronic energy + Delta-G solvation = -28938.717754 eV Core-core repulsion = 24773.562509 eV Total energy + Delta-G solvation = -4165.155245 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.69535 -38.93397 -38.17330 -36.57994 -35.62525 -34.82238 -33.82333 -32.16656 -31.28896 -31.12304 -28.93602 -28.35042 -26.85239 -25.23893 -24.33029 -23.78921 -22.91905 -21.54171 -20.25993 -19.19299 -18.43595 -17.88293 -17.77406 -16.95781 -16.15638 -16.05702 -15.76252 -15.31790 -15.13591 -15.05117 -14.89234 -14.57119 -14.37723 -14.17862 -14.10932 -13.81415 -13.43420 -13.29388 -13.16736 -13.02117 -12.78206 -12.63504 -12.50357 -12.04843 -11.91341 -11.82930 -11.72892 -11.49645 -11.46586 -11.39715 -11.35293 -11.00706 -10.76870 -10.36588 -10.25318 -10.18341 -9.79368 -9.54768 -9.47315 -8.74472 -8.41182 -7.99266 -7.91437 -6.38176 -3.78778 0.98120 2.58553 2.94199 3.20483 3.28805 3.35122 3.56725 3.95429 4.04751 4.09260 4.27750 4.32888 4.49119 4.55194 4.68326 4.75241 4.76989 4.79072 4.91880 5.01346 5.03666 5.10762 5.17654 5.21344 5.28368 5.33515 5.37910 5.38204 5.40276 5.47274 5.47721 5.56351 5.60088 5.65826 5.70289 5.84560 5.88158 6.02812 6.04392 6.12882 6.19048 6.30841 7.05563 7.07246 7.25258 7.58661 7.69844 7.88979 8.10284 8.65574 9.21747 9.58519 10.10372 10.79674 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.032013 B = 0.001610 C = 0.001586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.427874 B =17385.717677 C =17652.388220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.099 4.099 3 C -0.022 4.022 4 C -0.124 4.124 5 C -0.239 4.239 6 C 0.549 3.451 7 O -0.540 6.540 8 N -0.613 5.613 9 C 0.071 3.929 10 C 0.045 3.955 11 O -0.351 6.351 12 C 0.084 3.916 13 H 0.062 0.938 14 C 0.068 3.932 15 N -0.660 5.660 16 C 0.051 3.949 17 C 0.442 3.558 18 O -0.582 6.582 19 N -0.565 5.565 20 C -0.299 4.299 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.279 1.279 26 H -0.284 1.284 27 H -0.270 1.270 28 C 0.085 3.915 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.055 0.945 36 H 0.087 0.913 37 H 0.128 0.872 38 H 0.095 0.905 39 H 0.078 0.922 40 H 0.055 0.945 41 H 0.107 0.893 42 H 0.045 0.955 43 H 0.083 0.917 44 H 0.348 0.652 45 H 0.043 0.957 46 H 0.087 0.913 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.077 0.923 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.830 -16.943 -14.287 31.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.136 4.136 3 C -0.024 4.024 4 C -0.180 4.180 5 C -0.260 4.260 6 C 0.342 3.658 7 O -0.420 6.420 8 N -0.347 5.347 9 C -0.052 4.052 10 C -0.033 4.033 11 O -0.269 6.269 12 C 0.025 3.975 13 H 0.080 0.920 14 C -0.062 4.062 15 N -0.292 5.292 16 C -0.081 4.081 17 C 0.227 3.773 18 O -0.466 6.466 19 N -0.202 5.202 20 C -0.428 4.428 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.757 3.243 25 H -0.205 1.205 26 H -0.209 1.209 27 H -0.194 1.194 28 C -0.038 4.038 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.074 0.926 36 H 0.105 0.895 37 H 0.146 0.854 38 H 0.113 0.887 39 H 0.097 0.903 40 H 0.073 0.927 41 H 0.125 0.875 42 H 0.063 0.937 43 H 0.101 0.899 44 H 0.167 0.833 45 H 0.061 0.939 46 H 0.105 0.895 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.095 0.905 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -22.787 -17.035 -13.751 31.600 hybrid contribution 1.031 0.448 -0.474 1.220 sum -21.756 -16.587 -14.224 30.835 Atomic orbital electron populations 1.21724 0.94088 1.02196 1.02469 1.20798 0.96765 0.92498 1.03540 1.22605 0.89645 0.94736 0.95444 1.21126 1.02532 1.00995 0.93317 1.22405 1.07923 0.96687 0.98942 1.18561 0.79246 0.85159 0.82853 1.90765 1.52259 1.68964 1.29969 1.48004 1.54726 1.24608 1.07350 1.22575 0.97599 1.00898 0.84144 1.22967 0.93960 0.86718 0.99662 1.88171 1.72850 1.33531 1.32364 1.22469 0.93210 0.97342 0.84503 0.91980 1.21902 0.94543 0.95012 0.94756 1.59949 1.13002 1.07662 1.48597 1.21678 0.96275 0.92111 0.98085 1.19802 0.85240 0.85668 0.86543 1.90523 1.72511 1.25686 1.57868 1.41856 1.28352 1.09798 1.40155 1.19709 1.06640 0.97123 1.19376 0.87940 1.25254 0.99296 0.94721 0.98686 1.69616 1.40521 1.00017 1.44236 0.85855 0.80655 0.77684 0.80077 1.20471 1.20943 1.19418 1.22282 0.94464 0.85953 1.01104 0.91990 0.92363 0.92289 0.90165 0.90578 0.90125 0.92596 0.89479 0.85394 0.88707 0.90330 0.92707 0.87529 0.93730 0.89892 0.83300 0.93922 0.89484 0.77462 0.91922 0.90453 0.88127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.60 9.89 37.15 0.37 -0.23 16 2 C -0.10 -0.47 6.08 -27.88 -0.17 -0.64 16 3 C -0.02 -0.16 5.36 -101.17 -0.54 -0.71 16 4 C -0.12 -1.01 8.45 36.01 0.30 -0.70 16 5 C -0.24 -1.91 8.92 -37.81 -0.34 -2.25 16 6 C 0.55 5.99 7.49 -12.66 -0.09 5.89 16 7 O -0.54 -7.35 12.81 5.26 0.07 -7.28 16 8 N -0.61 -6.11 3.02 -173.66 -0.52 -6.63 16 9 C 0.07 0.53 6.56 -3.53 -0.02 0.51 16 10 C 0.04 0.41 6.98 37.31 0.26 0.67 16 11 O -0.35 -4.57 10.33 -35.23 -0.36 -4.94 16 12 C 0.08 1.00 2.96 -26.58 -0.08 0.92 16 13 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 14 C 0.07 0.87 5.35 -3.82 -0.02 0.85 16 15 N -0.66 -11.17 6.08 -115.06 -0.70 -11.87 16 16 C 0.05 0.93 6.17 -4.98 -0.03 0.90 16 17 C 0.44 10.72 7.82 -10.99 -0.09 10.63 16 18 O -0.58 -16.24 15.78 5.55 0.09 -16.15 16 19 N -0.56 -14.60 5.29 -10.96 -0.06 -14.66 16 20 C -0.30 -8.49 9.68 -14.94 -0.14 -8.63 16 21 H 0.10 3.05 7.16 -52.48 -0.38 2.67 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.84 13.05 55.50 0.72 -24.12 16 24 Si 0.93 21.33 29.55 -169.99 -5.02 16.30 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 28 C 0.09 0.90 5.91 -3.52 -0.02 0.88 16 29 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.08 0.32 8.04 -51.92 -0.42 -0.10 16 34 H 0.08 0.73 7.98 -51.93 -0.41 0.32 16 35 H 0.06 0.34 8.09 -51.93 -0.42 -0.08 16 36 H 0.09 0.88 6.27 -51.93 -0.33 0.56 16 37 H 0.13 0.73 5.95 -52.49 -0.31 0.42 16 38 H 0.09 0.48 5.41 -51.93 -0.28 0.20 16 39 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 44 H 0.35 6.07 8.43 -39.29 -0.33 5.74 16 45 H 0.04 0.69 8.14 -51.92 -0.42 0.27 16 46 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 47 H 0.39 9.66 7.90 -40.82 -0.32 9.34 16 48 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 49 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 50 H 0.10 1.12 7.13 -51.93 -0.37 0.75 16 LS Contribution 406.83 15.07 6.13 6.13 Total: -1.00 -34.59 406.83 -8.57 -43.16 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: -8.20 Total: 11.49 kcal Atomic # 6 Polarization: 9.28 SS G_CDS: -0.71 Total: 8.57 kcal Atomic # 7 Polarization: -56.73 SS G_CDS: -0.56 Total: -57.28 kcal Atomic # 8 Polarization: -28.16 SS G_CDS: -0.21 Total: -28.37 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -34.59 -8.57 -43.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755002843.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.895 kcal (2) G-P(sol) polarization free energy of solvation -34.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds