Wall clock time and date at job start Sat Apr 11 2020 05:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.46968 * 2 1 4 4 C 1.52994 * 109.47540 * 120.00299 * 2 1 3 5 5 C 1.50703 * 109.47355 * 174.99854 * 4 2 1 6 6 O 1.21275 * 119.99870 * 359.97438 * 5 4 2 7 7 N 1.34775 * 119.99777 * 179.97438 * 5 4 2 8 8 C 1.47127 * 121.05936 * 0.02658 * 7 5 4 9 9 C 1.53217 * 108.73398 * 232.19242 * 8 7 5 10 10 O 1.43110 * 109.34952 * 305.88873 * 9 8 7 11 11 C 1.42609 * 113.99130 * 59.96849 * 10 9 8 12 12 C 1.53468 * 113.76371 * 73.08789 * 11 10 9 13 13 N 1.48049 * 86.03058 * 91.27690 * 12 11 10 14 14 C 1.46891 * 111.00416 * 137.26533 * 13 12 11 15 15 C 1.50702 * 109.47395 * 90.55266 * 14 13 12 16 16 O 1.21297 * 119.99530 * 359.97438 * 15 14 13 17 17 N 1.34779 * 120.00355 * 180.02562 * 15 14 13 18 18 C 1.37093 * 120.00187 * 179.97438 * 17 15 14 19 19 H 1.07999 * 120.00042 * 0.02562 * 18 17 15 20 20 C 1.38950 * 119.99939 * 179.97438 * 18 17 15 21 21 N 1.31413 * 120.00077 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99810 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47367 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.46858 * 120.00075 * 22 20 18 25 25 H 1.48498 * 109.47431 * 240.00179 * 22 20 18 26 26 C 1.48053 * 90.83852 * 24.33806 * 13 12 11 27 27 C 1.47343 * 121.05135 * 179.97438 * 7 5 4 28 28 H 1.08995 * 109.47179 * 299.99387 * 1 2 3 29 29 H 1.08997 * 109.47371 * 59.99624 * 1 2 3 30 30 H 1.09007 * 109.47349 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46694 * 240.00277 * 2 1 3 32 32 H 1.09004 * 109.47187 * 60.00579 * 3 2 1 33 33 H 1.08999 * 109.46992 * 180.02562 * 3 2 1 34 34 H 1.08997 * 109.47381 * 300.00370 * 3 2 1 35 35 H 1.09006 * 109.46947 * 54.99753 * 4 2 1 36 36 H 1.08997 * 109.47004 * 295.00204 * 4 2 1 37 37 H 1.09001 * 109.58943 * 351.96371 * 8 7 5 38 38 H 1.08997 * 109.59510 * 112.41401 * 8 7 5 39 39 H 1.09008 * 109.49342 * 65.84527 * 9 8 7 40 40 H 1.08997 * 109.49739 * 185.90100 * 9 8 7 41 41 H 1.08997 * 113.78243 * 205.54651 * 12 11 10 42 42 H 1.08993 * 113.78487 * 336.99588 * 12 11 10 43 43 H 1.09005 * 109.47750 * 210.55286 * 14 13 12 44 44 H 1.08998 * 109.47201 * 330.55451 * 14 13 12 45 45 H 0.97002 * 119.99518 * 359.97438 * 17 15 14 46 46 H 0.96998 * 119.99642 * 179.97438 * 21 20 18 47 47 H 1.08997 * 113.78161 * 221.37140 * 26 13 12 48 48 H 1.08999 * 113.88333 * 89.95394 * 26 13 12 49 49 H 1.09002 * 109.74964 * 251.24646 * 27 7 5 50 50 H 1.09000 * 109.74972 * 11.92363 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5420 -0.8294 1.1887 6 8 4.1450 -0.3748 0.2397 7 7 4.2150 -1.4313 2.1893 8 6 3.5070 -1.9914 3.3510 9 6 4.1403 -1.4327 4.6295 10 8 5.5489 -1.6846 4.6101 11 6 6.2290 -1.0904 3.5064 12 6 6.3792 0.4327 3.6199 13 7 7.6737 0.1526 4.2813 14 6 8.7207 1.0613 3.7956 15 6 8.7624 2.2906 4.6662 16 8 7.9951 2.3992 5.5993 17 7 9.6517 3.2699 4.4075 18 6 9.6893 4.3884 5.1993 19 1 9.0066 4.4848 6.0306 20 6 10.6064 5.3977 4.9328 21 7 11.4374 5.2802 3.9216 22 14 10.6581 6.9215 6.0121 23 1 9.6275 6.8101 7.0755 24 1 12.0007 7.0413 6.6352 25 1 10.3876 8.1241 5.1840 26 6 7.7583 -1.1629 3.6071 27 6 5.6832 -1.5504 2.1538 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.6767 1.9563 0.8901 33 1 3.1299 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8899 35 1 1.6054 -1.7199 1.2950 36 1 1.7517 -0.1584 2.1369 37 1 2.4554 -1.7075 3.3098 38 1 3.5952 -3.0778 3.3440 39 1 3.9637 -0.3584 4.6834 40 1 3.6956 -1.9185 5.4980 41 1 6.4769 0.9376 2.6588 42 1 5.6431 0.8994 4.2743 43 1 9.6861 0.5566 3.8331 44 1 8.5020 1.3513 2.7679 45 1 10.2650 3.1831 3.6611 46 1 12.0773 5.9849 3.7354 47 1 8.1188 -1.9646 4.2515 48 1 8.2643 -1.1325 2.6422 49 1 5.9644 -2.5885 1.9767 50 1 6.0848 -0.9197 1.3607 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755048537.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:29 Heat of formation + Delta-G solvation = -72.792125 kcal Electronic energy + Delta-G solvation = -30530.677592 eV Core-core repulsion = 26366.444397 eV Total energy + Delta-G solvation = -4164.233194 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.24381 -39.83831 -38.16169 -37.09288 -35.91447 -34.94827 -33.85046 -31.72086 -31.12023 -29.27922 -28.93494 -27.34693 -26.70505 -26.28603 -24.91237 -23.74716 -22.53107 -20.80580 -19.60424 -19.27035 -19.11416 -17.85371 -17.54076 -16.84502 -16.37960 -16.16110 -15.87437 -15.51218 -15.39896 -15.02813 -14.65566 -14.48716 -14.30466 -14.09924 -13.93202 -13.64809 -13.53421 -13.23147 -13.04246 -12.67910 -12.50778 -12.48491 -12.29759 -12.18396 -12.00603 -11.63178 -11.45272 -11.35403 -11.32993 -11.15525 -11.13523 -10.95520 -10.88517 -10.66113 -10.31584 -10.18873 -10.03910 -9.90327 -9.47082 -8.90615 -8.60244 -8.11989 -7.91610 -6.37673 -3.78159 2.35693 2.55199 3.18926 3.28934 3.32172 3.36478 3.89873 3.96350 4.11833 4.24213 4.32566 4.38283 4.43996 4.56335 4.57613 4.65377 4.89603 4.91043 4.97374 5.11355 5.18977 5.21399 5.24922 5.26050 5.29804 5.34066 5.39273 5.43054 5.44416 5.50819 5.58092 5.63792 5.69449 5.69873 5.74846 5.78852 5.86412 5.98167 6.05859 6.09397 6.25348 6.30443 6.57640 7.00780 7.04563 7.16211 7.59208 7.89269 8.10648 8.66899 9.22923 9.59404 10.12088 10.80439 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013005 B = 0.002542 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.481220 B =11011.419291 C =12196.772839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.081 4.081 3 C -0.155 4.155 4 C -0.136 4.136 5 C 0.517 3.483 6 O -0.532 6.532 7 N -0.617 5.617 8 C 0.072 3.928 9 C 0.044 3.956 10 O -0.338 6.338 11 C 0.075 3.925 12 C -0.004 4.004 13 N -0.437 5.437 14 C 0.007 3.993 15 C 0.448 3.552 16 O -0.575 6.575 17 N -0.568 5.568 18 C -0.296 4.296 19 H 0.103 0.897 20 C 0.020 3.980 21 N -0.903 5.903 22 Si 0.929 3.071 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.282 1.282 26 C 0.018 3.982 27 C 0.097 3.903 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.077 0.923 32 H 0.049 0.951 33 H 0.075 0.925 34 H 0.052 0.948 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.061 0.939 40 H 0.109 0.891 41 H 0.075 0.925 42 H 0.092 0.908 43 H 0.090 0.910 44 H 0.058 0.942 45 H 0.391 0.609 46 H 0.270 0.730 47 H 0.101 0.899 48 H 0.084 0.916 49 H 0.077 0.923 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.782 -17.277 -7.673 26.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.100 4.100 3 C -0.212 4.212 4 C -0.176 4.176 5 C 0.306 3.694 6 O -0.409 6.409 7 N -0.352 5.352 8 C -0.051 4.051 9 C -0.033 4.033 10 O -0.255 6.255 11 C 0.033 3.967 12 C -0.133 4.133 13 N -0.159 5.159 14 C -0.125 4.125 15 C 0.233 3.767 16 O -0.458 6.458 17 N -0.205 5.205 18 C -0.426 4.426 19 H 0.120 0.880 20 C -0.181 4.181 21 N -0.545 5.545 22 Si 0.756 3.244 23 H -0.193 1.193 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.111 4.111 27 C -0.026 4.026 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.095 0.905 32 H 0.068 0.932 33 H 0.093 0.907 34 H 0.071 0.929 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.113 0.887 38 H 0.097 0.903 39 H 0.079 0.921 40 H 0.127 0.873 41 H 0.093 0.907 42 H 0.111 0.889 43 H 0.108 0.892 44 H 0.076 0.924 45 H 0.224 0.776 46 H 0.080 0.920 47 H 0.120 0.880 48 H 0.102 0.898 49 H 0.095 0.905 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -18.674 -16.862 -6.754 26.051 hybrid contribution 0.408 0.899 -0.929 1.356 sum -18.266 -15.963 -7.683 25.445 Atomic orbital electron populations 1.21863 0.94894 1.01615 1.02142 1.20876 0.95085 0.97065 0.96945 1.21971 1.03265 0.94792 1.01216 1.21819 0.91720 1.02851 1.01213 1.20769 0.90299 0.76764 0.81583 1.90680 1.70284 1.47043 1.32880 1.48218 1.07156 1.58539 1.21245 1.22469 0.97357 0.99323 0.85953 1.22987 0.82038 1.01125 0.97161 1.88013 1.18910 1.73610 1.45003 1.23041 0.93699 0.93656 0.86255 1.24459 0.94872 0.95156 0.98813 1.68474 1.01156 1.00628 1.45620 1.22524 0.97210 0.95424 0.97350 1.19662 0.84615 0.84727 0.87731 1.90524 1.43047 1.79969 1.32213 1.41880 1.32340 1.16866 1.29461 1.19736 1.17684 0.94540 1.10609 0.87957 1.25251 0.95956 0.99575 0.97286 1.69622 1.21282 1.34924 1.28681 0.85810 0.78165 0.80766 0.79668 1.19250 1.20761 1.20799 1.24032 0.91923 0.95706 0.99454 1.22239 0.79826 1.02670 0.97838 0.92568 0.92309 0.92763 0.90476 0.93230 0.90653 0.92852 0.88963 0.88782 0.88667 0.90277 0.92103 0.87281 0.90689 0.88926 0.89185 0.92385 0.77561 0.91991 0.88027 0.89847 0.90498 0.87847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.19 37.16 0.34 -0.55 16 2 C -0.08 -0.65 2.57 -90.63 -0.23 -0.89 16 3 C -0.16 -1.51 8.93 37.16 0.33 -1.18 16 4 C -0.14 -0.99 3.54 -27.88 -0.10 -1.09 16 5 C 0.52 5.51 7.43 -10.98 -0.08 5.42 16 6 O -0.53 -7.55 13.46 5.56 0.07 -7.48 16 7 N -0.62 -5.98 3.03 -172.41 -0.52 -6.51 16 8 C 0.07 0.50 6.50 -3.59 -0.02 0.47 16 9 C 0.04 0.40 6.88 37.27 0.26 0.66 16 10 O -0.34 -4.29 10.52 -35.23 -0.37 -4.66 16 11 C 0.08 0.93 1.21 -90.26 -0.11 0.82 16 12 C 0.00 -0.06 7.10 -2.95 -0.02 -0.08 16 13 N -0.44 -7.62 5.65 -242.12 -1.37 -8.99 16 14 C 0.01 0.13 5.28 -4.98 -0.03 0.10 16 15 C 0.45 11.05 7.83 -10.98 -0.09 10.97 16 16 O -0.57 -16.39 16.01 5.54 0.09 -16.30 16 17 N -0.57 -14.88 5.29 -10.96 -0.06 -14.94 16 18 C -0.30 -8.48 9.68 -14.94 -0.14 -8.63 16 19 H 0.10 3.09 7.16 -52.49 -0.38 2.71 16 20 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 21 N -0.90 -25.11 13.05 55.50 0.72 -24.38 16 22 Si 0.93 21.52 29.55 -169.99 -5.02 16.49 16 23 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 C 0.02 0.23 7.35 -2.97 -0.02 0.21 16 27 C 0.10 1.04 5.78 -3.61 -0.02 1.02 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.27 8.14 -51.92 -0.42 -0.15 16 31 H 0.08 0.72 7.95 -51.93 -0.41 0.30 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.94 5.95 -51.93 -0.31 0.63 16 34 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.09 0.47 7.99 -51.93 -0.41 0.06 16 36 H 0.09 0.57 7.69 -51.93 -0.40 0.18 16 37 H 0.10 0.41 6.03 -51.93 -0.31 0.10 16 38 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.62 7.19 -51.92 -0.37 0.24 16 40 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.08 1.16 7.28 -51.93 -0.38 0.78 16 42 H 0.09 1.61 7.27 -51.93 -0.38 1.23 16 43 H 0.09 1.49 8.08 -51.93 -0.42 1.07 16 44 H 0.06 0.96 7.38 -51.93 -0.38 0.58 16 45 H 0.39 9.76 7.90 -40.82 -0.32 9.44 16 46 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 47 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 48 H 0.08 0.88 7.87 -51.93 -0.41 0.47 16 49 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 50 H 0.10 1.22 6.91 -51.93 -0.36 0.87 16 LS Contribution 396.90 15.07 5.98 5.98 Total: -1.00 -35.58 396.90 -8.69 -44.27 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: -8.19 Total: 8.77 kcal Atomic # 6 Polarization: 7.76 SS G_CDS: -0.03 Total: 7.73 kcal Atomic # 7 Polarization: -53.59 SS G_CDS: -1.22 Total: -54.82 kcal Atomic # 8 Polarization: -28.23 SS G_CDS: -0.21 Total: -28.44 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.58 -8.69 -44.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755048537.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.517 kcal (2) G-P(sol) polarization free energy of solvation -35.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds