Wall clock time and date at job start Sat Apr 11 2020 05:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.46968 * 2 1 4 4 C 1.52994 * 109.47540 * 120.00299 * 2 1 3 5 5 C 1.50703 * 109.47355 * 174.99854 * 4 2 1 6 6 O 1.21275 * 119.99870 * 359.97438 * 5 4 2 7 7 N 1.34775 * 119.99777 * 179.97438 * 5 4 2 8 8 C 1.47127 * 121.05936 * 0.02658 * 7 5 4 9 9 C 1.53217 * 108.73398 * 232.19242 * 8 7 5 10 10 O 1.43110 * 109.34952 * 305.88873 * 9 8 7 11 11 C 1.42609 * 113.99130 * 59.96849 * 10 9 8 12 12 C 1.53468 * 113.76371 * 73.08789 * 11 10 9 13 13 N 1.48049 * 86.03058 * 91.27690 * 12 11 10 14 14 C 1.46891 * 111.00416 * 137.26533 * 13 12 11 15 15 C 1.50702 * 109.47395 * 90.55266 * 14 13 12 16 16 O 1.21297 * 119.99530 * 359.97438 * 15 14 13 17 17 N 1.34779 * 120.00355 * 180.02562 * 15 14 13 18 18 C 1.37093 * 120.00187 * 179.97438 * 17 15 14 19 19 H 1.07999 * 120.00042 * 0.02562 * 18 17 15 20 20 C 1.38950 * 119.99939 * 179.97438 * 18 17 15 21 21 N 1.31413 * 120.00077 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99810 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47367 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.46858 * 120.00075 * 22 20 18 25 25 H 1.48498 * 109.47431 * 240.00179 * 22 20 18 26 26 C 1.48053 * 90.83852 * 24.33806 * 13 12 11 27 27 C 1.47343 * 121.05135 * 179.97438 * 7 5 4 28 28 H 1.08995 * 109.47179 * 299.99387 * 1 2 3 29 29 H 1.08997 * 109.47371 * 59.99624 * 1 2 3 30 30 H 1.09007 * 109.47349 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46694 * 240.00277 * 2 1 3 32 32 H 1.09004 * 109.47187 * 60.00579 * 3 2 1 33 33 H 1.08999 * 109.46992 * 180.02562 * 3 2 1 34 34 H 1.08997 * 109.47381 * 300.00370 * 3 2 1 35 35 H 1.09006 * 109.46947 * 54.99753 * 4 2 1 36 36 H 1.08997 * 109.47004 * 295.00204 * 4 2 1 37 37 H 1.09001 * 109.58943 * 351.96371 * 8 7 5 38 38 H 1.08997 * 109.59510 * 112.41401 * 8 7 5 39 39 H 1.09008 * 109.49342 * 65.84527 * 9 8 7 40 40 H 1.08997 * 109.49739 * 185.90100 * 9 8 7 41 41 H 1.08997 * 113.78243 * 205.54651 * 12 11 10 42 42 H 1.08993 * 113.78487 * 336.99588 * 12 11 10 43 43 H 1.09005 * 109.47750 * 210.55286 * 14 13 12 44 44 H 1.08998 * 109.47201 * 330.55451 * 14 13 12 45 45 H 0.97002 * 119.99518 * 359.97438 * 17 15 14 46 46 H 0.96998 * 119.99642 * 179.97438 * 21 20 18 47 47 H 1.08997 * 113.78161 * 221.37140 * 26 13 12 48 48 H 1.08999 * 113.88333 * 89.95394 * 26 13 12 49 49 H 1.09002 * 109.74964 * 251.24646 * 27 7 5 50 50 H 1.09000 * 109.74972 * 11.92363 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5420 -0.8294 1.1887 6 8 4.1450 -0.3748 0.2397 7 7 4.2150 -1.4313 2.1893 8 6 3.5070 -1.9914 3.3510 9 6 4.1403 -1.4327 4.6295 10 8 5.5489 -1.6846 4.6101 11 6 6.2290 -1.0904 3.5064 12 6 6.3792 0.4327 3.6199 13 7 7.6737 0.1526 4.2813 14 6 8.7207 1.0613 3.7956 15 6 8.7624 2.2906 4.6662 16 8 7.9951 2.3992 5.5993 17 7 9.6517 3.2699 4.4075 18 6 9.6893 4.3884 5.1993 19 1 9.0066 4.4848 6.0306 20 6 10.6064 5.3977 4.9328 21 7 11.4374 5.2802 3.9216 22 14 10.6581 6.9215 6.0121 23 1 9.6275 6.8101 7.0755 24 1 12.0007 7.0413 6.6352 25 1 10.3876 8.1241 5.1840 26 6 7.7583 -1.1629 3.6071 27 6 5.6832 -1.5504 2.1538 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.6767 1.9563 0.8901 33 1 3.1299 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8899 35 1 1.6054 -1.7199 1.2950 36 1 1.7517 -0.1584 2.1369 37 1 2.4554 -1.7075 3.3098 38 1 3.5952 -3.0778 3.3440 39 1 3.9637 -0.3584 4.6834 40 1 3.6956 -1.9185 5.4980 41 1 6.4769 0.9376 2.6588 42 1 5.6431 0.8994 4.2743 43 1 9.6861 0.5566 3.8331 44 1 8.5020 1.3513 2.7679 45 1 10.2650 3.1831 3.6611 46 1 12.0773 5.9849 3.7354 47 1 8.1188 -1.9646 4.2515 48 1 8.2643 -1.1325 2.6422 49 1 5.9644 -2.5885 1.9767 50 1 6.0848 -0.9197 1.3607 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755048537.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:29 Heat of formation + Delta-G solvation = -100.757223 kcal Electronic energy + Delta-G solvation = -30531.890249 eV Core-core repulsion = 26366.444397 eV Total energy + Delta-G solvation = -4165.445852 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.22322 -40.81494 -39.86414 -38.27851 -36.58420 -35.97136 -35.78768 -33.36056 -32.64622 -30.11668 -29.97948 -27.97086 -27.78567 -27.41846 -26.64220 -24.69661 -23.69642 -21.56505 -21.04578 -20.53777 -19.98066 -19.88976 -18.31871 -17.93807 -17.69462 -17.20151 -17.02450 -16.68214 -16.56473 -16.31981 -15.77387 -15.75600 -15.65754 -15.22512 -14.88937 -14.76007 -14.65800 -14.44597 -14.24627 -13.75082 -13.57521 -13.44848 -13.37431 -13.15369 -13.04782 -12.96835 -12.75311 -12.58672 -12.43970 -12.23434 -12.19969 -12.12169 -12.04900 -11.75940 -11.60889 -11.56148 -11.53706 -11.01451 -10.71576 -10.43470 -10.04175 -9.85581 -9.45844 -8.49395 -5.98443 1.34072 1.38729 1.53467 1.58418 1.83859 2.01987 2.25875 2.43012 2.71234 3.16233 3.27395 3.34414 3.40000 3.56990 3.81765 3.84314 3.99360 4.01782 4.10355 4.17220 4.25522 4.28476 4.31372 4.33152 4.42795 4.47403 4.50857 4.58537 4.64248 4.67922 4.69368 4.72076 4.74707 4.82943 4.83331 4.92326 5.03453 5.10532 5.25709 5.30333 5.34254 5.37927 5.46183 5.49681 5.80572 6.02211 6.14625 6.31979 6.57748 7.10158 7.12456 7.52949 8.09671 8.68444 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013005 B = 0.002542 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.481220 B =11011.419291 C =12196.772839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.080 4.080 3 C -0.155 4.155 4 C -0.131 4.131 5 C 0.509 3.491 6 O -0.577 6.577 7 N -0.619 5.619 8 C 0.076 3.924 9 C 0.036 3.964 10 O -0.358 6.358 11 C 0.094 3.906 12 C -0.008 4.008 13 N -0.473 5.473 14 C 0.021 3.979 15 C 0.441 3.559 16 O -0.620 6.620 17 N -0.575 5.575 18 C -0.333 4.333 19 H 0.076 0.924 20 C -0.014 4.014 21 N -0.921 5.921 22 Si 0.994 3.006 23 H -0.274 1.274 24 H -0.268 1.268 25 H -0.269 1.269 26 C 0.025 3.975 27 C 0.102 3.898 28 H 0.063 0.937 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.043 0.957 34 H 0.053 0.947 35 H 0.125 0.875 36 H 0.110 0.890 37 H 0.127 0.873 38 H 0.100 0.900 39 H 0.042 0.958 40 H 0.135 0.865 41 H 0.071 0.929 42 H 0.064 0.936 43 H 0.114 0.886 44 H 0.078 0.922 45 H 0.396 0.604 46 H 0.278 0.722 47 H 0.110 0.890 48 H 0.111 0.889 49 H 0.098 0.902 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.988 -18.933 -7.889 28.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.099 4.099 3 C -0.212 4.212 4 C -0.170 4.170 5 C 0.300 3.700 6 O -0.456 6.456 7 N -0.353 5.353 8 C -0.046 4.046 9 C -0.040 4.040 10 O -0.276 6.276 11 C 0.052 3.948 12 C -0.138 4.138 13 N -0.196 5.196 14 C -0.111 4.111 15 C 0.229 3.771 16 O -0.506 6.506 17 N -0.213 5.213 18 C -0.463 4.463 19 H 0.094 0.906 20 C -0.213 4.213 21 N -0.562 5.562 22 Si 0.817 3.183 23 H -0.199 1.199 24 H -0.194 1.194 25 H -0.195 1.195 26 C -0.104 4.104 27 C -0.021 4.021 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.143 0.857 36 H 0.128 0.872 37 H 0.145 0.855 38 H 0.118 0.882 39 H 0.060 0.940 40 H 0.153 0.847 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.132 0.868 44 H 0.096 0.904 45 H 0.230 0.770 46 H 0.088 0.912 47 H 0.128 0.872 48 H 0.129 0.871 49 H 0.116 0.884 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -19.879 -18.550 -6.978 28.071 hybrid contribution 0.767 1.412 -0.827 1.807 sum -19.113 -17.138 -7.805 26.831 Atomic orbital electron populations 1.21813 0.92858 1.02798 1.02443 1.20852 0.96630 0.95522 0.96900 1.21950 1.01167 0.96580 1.01537 1.21883 0.89081 1.04776 1.01267 1.21441 0.91717 0.75853 0.81037 1.90667 1.71383 1.48826 1.34740 1.48361 1.06857 1.58191 1.21863 1.22662 0.98390 1.00174 0.83390 1.23258 0.80546 1.00572 0.99669 1.87978 1.20982 1.73362 1.45313 1.22808 0.93846 0.90834 0.87319 1.24415 0.93839 0.97872 0.97656 1.68404 1.01270 1.02465 1.47421 1.22398 0.99119 0.93008 0.96567 1.20784 0.82946 0.85828 0.87579 1.90483 1.44492 1.81166 1.34410 1.41954 1.32981 1.16931 1.29459 1.19672 1.18718 0.96575 1.11307 0.90609 1.26061 0.94957 1.01919 0.98400 1.69679 1.21269 1.35955 1.29275 0.84864 0.78376 0.77173 0.77869 1.19907 1.19350 1.19456 1.24158 0.92580 0.93129 1.00496 1.22105 0.80780 1.03360 0.95894 0.91795 0.92538 0.91114 0.92074 0.92708 0.93834 0.92742 0.85747 0.87166 0.85550 0.88233 0.94008 0.84728 0.91071 0.91771 0.86780 0.90440 0.77013 0.91248 0.87171 0.87130 0.88378 0.89334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.19 71.98 0.66 -0.71 16 2 C -0.08 -1.20 2.57 -10.80 -0.03 -1.23 16 3 C -0.16 -3.06 8.93 71.98 0.64 -2.42 16 4 C -0.13 -1.58 3.54 29.85 0.11 -1.47 16 5 C 0.51 10.33 7.43 87.66 0.65 10.98 16 6 O -0.58 -16.69 13.46 -3.01 -0.04 -16.73 16 7 N -0.62 -10.94 3.03 -817.76 -2.48 -13.42 16 8 C 0.08 0.81 6.50 86.33 0.56 1.37 16 9 C 0.04 0.59 6.88 72.05 0.50 1.09 16 10 O -0.36 -8.68 10.52 -148.98 -1.57 -10.25 16 11 C 0.09 2.26 1.21 -10.49 -0.01 2.24 16 12 C -0.01 -0.27 7.10 86.23 0.61 0.34 16 13 N -0.47 -16.57 5.65 -924.09 -5.22 -21.79 16 14 C 0.02 0.77 5.28 85.56 0.45 1.22 16 15 C 0.44 22.50 7.83 87.66 0.69 23.18 16 16 O -0.62 -36.99 16.01 -3.08 -0.05 -37.04 16 17 N -0.58 -31.05 5.29 -306.98 -1.62 -32.68 16 18 C -0.33 -19.72 9.68 84.04 0.81 -18.91 16 19 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 20 C -0.01 -0.76 5.50 84.93 0.47 -0.30 16 21 N -0.92 -51.04 13.05 21.66 0.28 -50.76 16 22 Si 0.99 44.23 29.55 68.60 2.03 46.26 16 23 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 24 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 25 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 26 C 0.02 0.60 7.35 86.22 0.63 1.23 16 27 C 0.10 2.04 5.78 86.20 0.50 2.54 16 28 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.07 0.47 8.14 -2.38 -0.02 0.45 16 31 H 0.06 1.12 7.95 -2.38 -0.02 1.10 16 32 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 33 H 0.04 1.14 5.95 -2.39 -0.01 1.13 16 34 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.12 0.74 7.99 -2.38 -0.02 0.72 16 36 H 0.11 1.01 7.69 -2.39 -0.02 0.99 16 37 H 0.13 0.57 6.03 -2.39 -0.01 0.55 16 38 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.04 0.84 7.19 -2.38 -0.02 0.82 16 40 H 0.14 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.07 2.30 7.28 -2.39 -0.02 2.28 16 42 H 0.06 2.38 7.27 -2.39 -0.02 2.37 16 43 H 0.11 3.63 8.08 -2.38 -0.02 3.61 16 44 H 0.08 2.55 7.38 -2.39 -0.02 2.53 16 45 H 0.40 20.17 7.90 -92.71 -0.73 19.44 16 46 H 0.28 14.33 8.31 -92.71 -0.77 13.56 16 47 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 48 H 0.11 2.06 7.87 -2.39 -0.02 2.04 16 49 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 50 H 0.09 2.07 6.91 -2.39 -0.02 2.06 16 Total: -1.00 -81.40 396.90 -1.21 -82.62 By element: Atomic # 1 Polarization: 34.42 SS G_CDS: 0.21 Total: 34.63 kcal Atomic # 6 Polarization: 11.92 SS G_CDS: 7.24 Total: 19.16 kcal Atomic # 7 Polarization: -109.61 SS G_CDS: -9.04 Total: -118.64 kcal Atomic # 8 Polarization: -62.36 SS G_CDS: -1.66 Total: -64.02 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -81.40 -1.21 -82.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755048537.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.141 kcal (2) G-P(sol) polarization free energy of solvation -81.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds