Wall clock time and date at job start Sat Apr 11 2020 05:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.46951 * 2 1 4 4 C 1.52992 * 109.47360 * 239.99558 * 2 1 3 5 5 C 1.50704 * 109.46886 * 119.99361 * 2 1 3 6 6 O 1.20781 * 120.00028 * 0.02562 * 5 2 1 7 7 C 1.49094 * 119.99830 * 180.02562 * 5 2 1 8 8 O 1.21360 * 120.00006 * 359.97438 * 7 5 2 9 9 N 1.34780 * 119.99650 * 180.02562 * 7 5 2 10 10 C 1.46497 * 119.99653 * 179.97438 * 9 7 5 11 11 C 1.53786 * 113.61643 * 105.85894 * 10 9 7 12 12 C 1.54049 * 86.98426 * 140.01639 * 11 10 9 13 13 C 1.53002 * 113.62024 * 220.02020 * 12 11 10 14 14 N 1.46894 * 109.47340 * 272.50033 * 13 12 11 15 15 C 1.46903 * 111.00180 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47213 * 179.97438 * 15 14 13 17 17 O 1.21292 * 119.99953 * 359.97438 * 16 15 14 18 18 N 1.34775 * 120.00191 * 180.02562 * 16 15 14 19 19 C 1.37102 * 120.00427 * 179.97438 * 18 16 15 20 20 H 1.08001 * 119.99695 * 359.97438 * 19 18 16 21 21 C 1.38947 * 120.00062 * 179.97438 * 19 18 16 22 22 N 1.31409 * 120.00007 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99680 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47133 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47047 * 120.00256 * 23 21 19 26 26 H 1.48497 * 109.47019 * 240.00108 * 23 21 19 27 27 C 1.53781 * 113.61305 * 203.46742 * 10 9 7 28 28 H 1.08999 * 109.47694 * 300.00556 * 1 2 3 29 29 H 1.09003 * 109.46916 * 60.00750 * 1 2 3 30 30 H 1.08996 * 109.47136 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46985 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.46698 * 299.99383 * 3 2 1 33 33 H 1.08992 * 109.47725 * 59.99808 * 3 2 1 34 34 H 1.09005 * 109.47101 * 299.99987 * 4 2 1 35 35 H 1.08995 * 109.47444 * 60.00303 * 4 2 1 36 36 H 1.09006 * 109.46885 * 180.02562 * 4 2 1 37 37 H 0.96995 * 120.00200 * 359.97438 * 9 7 5 38 38 H 1.09002 * 112.84935 * 334.66222 * 10 9 7 39 39 H 1.08992 * 113.61675 * 254.61383 * 11 10 9 40 40 H 1.09000 * 113.60973 * 25.51671 * 11 10 9 41 41 H 1.08996 * 113.68970 * 89.12734 * 12 11 10 42 42 H 1.08997 * 109.47064 * 32.50151 * 13 12 11 43 43 H 1.09006 * 109.47182 * 152.49563 * 13 12 11 44 44 H 1.00896 * 111.00096 * 56.04265 * 14 13 12 45 45 H 1.08998 * 109.46937 * 299.99994 * 15 14 13 46 46 H 1.09002 * 109.46820 * 59.99787 * 15 14 13 47 47 H 0.96997 * 119.99843 * 359.97438 * 18 16 15 48 48 H 0.97004 * 119.99929 * 179.97438 * 22 21 19 49 49 H 1.08999 * 113.61567 * 334.48111 * 27 10 9 50 50 H 1.08998 * 113.61196 * 105.38466 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 2.0322 -0.7103 1.2306 6 8 1.2473 -1.1696 2.0254 7 6 3.4981 -0.8460 1.4668 8 8 4.2867 -0.3849 0.6680 9 7 3.9472 -1.4817 2.5672 10 6 5.3875 -1.6155 2.7990 11 6 5.9228 -0.6876 3.9024 12 6 6.8063 -1.8666 4.3524 13 6 6.9096 -2.0101 5.8722 14 7 8.0133 -1.1775 6.3687 15 6 8.1432 -1.2909 7.8276 16 6 9.2833 -0.4255 8.2991 17 8 9.9248 0.2216 7.4986 18 7 9.5907 -0.3714 9.6102 19 6 10.6282 0.4155 10.0393 20 1 11.1995 0.9917 9.3265 21 6 10.9448 0.4716 11.3910 22 7 10.2500 -0.2299 12.2582 23 14 12.3589 1.5432 11.9753 24 1 12.9775 2.2250 10.8102 25 1 11.8482 2.5593 12.9303 26 1 13.3754 0.6967 12.6500 27 6 5.7570 -2.7934 3.7161 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 3.1299 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8901 33 1 1.6766 1.9564 0.8899 34 1 1.6767 -1.7490 -1.2490 35 1 1.6768 -0.2076 -2.1391 36 1 3.1300 -0.7216 -1.2488 37 1 3.3169 -1.8506 3.2055 38 1 5.9696 -1.5799 1.8781 39 1 6.4880 0.1629 3.5215 40 1 5.1691 -0.4019 4.6362 41 1 7.7766 -1.9007 3.8571 42 1 5.9756 -1.6872 6.3319 43 1 7.0982 -3.0531 6.1267 44 1 7.8943 -0.2153 6.0896 45 1 7.2178 -0.9632 8.3012 46 1 8.3406 -2.3289 8.0952 47 1 9.0779 -0.8892 10.2504 48 1 10.4712 -0.1909 13.2019 49 1 4.9582 -3.0823 4.3990 50 1 6.1885 -3.6417 3.1848 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755207364.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:49 Heat of formation + Delta-G solvation = -96.629323 kcal Electronic energy + Delta-G solvation = -28515.280992 eV Core-core repulsion = 24350.014139 eV Total energy + Delta-G solvation = -4165.266853 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.37716 -39.87106 -38.55783 -38.12703 -36.44327 -35.22924 -33.92073 -33.42032 -31.21495 -28.74699 -27.90640 -27.77810 -26.57254 -26.03915 -25.36290 -23.75539 -22.51017 -21.19469 -20.32616 -19.33947 -19.07006 -17.90474 -17.86141 -17.06234 -16.35565 -16.13119 -15.78477 -15.66137 -15.44102 -15.03438 -14.79562 -14.50752 -14.27202 -14.13643 -13.78483 -13.56384 -13.46528 -13.15479 -12.99012 -12.75935 -12.70819 -12.65276 -12.58655 -12.26910 -12.10353 -11.96418 -11.81051 -11.57383 -11.53626 -11.46566 -11.23650 -11.19731 -11.04192 -10.79160 -10.46595 -10.33882 -10.21845 -9.68299 -9.51606 -9.47218 -8.45696 -8.05127 -7.95292 -6.41434 -3.82215 0.52935 2.30133 2.55372 3.16745 3.27274 3.34734 3.66587 3.91474 4.04761 4.07312 4.19757 4.23872 4.33568 4.35764 4.46112 4.55226 4.71183 4.78019 5.09528 5.13020 5.15972 5.21058 5.27179 5.30550 5.35205 5.37180 5.38666 5.39794 5.46532 5.49573 5.57948 5.60129 5.64757 5.72479 5.78255 5.79861 5.82320 5.91209 5.99094 6.01402 6.23062 6.28774 6.41424 6.96579 7.23477 7.54424 7.55836 7.68173 8.07200 8.61835 9.18488 9.54938 10.06433 10.76407 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.025770 B = 0.001494 C = 0.001477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.289087 B =18735.784381 C =18952.439019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.095 4.095 3 C -0.145 4.145 4 C -0.144 4.144 5 C 0.360 3.640 6 O -0.418 6.418 7 C 0.475 3.525 8 O -0.503 6.503 9 N -0.695 5.695 10 C 0.117 3.883 11 C -0.150 4.150 12 C -0.101 4.101 13 C 0.071 3.929 14 N -0.668 5.668 15 C 0.050 3.950 16 C 0.441 3.559 17 O -0.583 6.583 18 N -0.565 5.565 19 C -0.299 4.299 20 H 0.104 0.896 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.281 1.281 27 C -0.138 4.138 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.409 0.591 38 H 0.120 0.880 39 H 0.078 0.922 40 H 0.084 0.916 41 H 0.107 0.893 42 H 0.027 0.973 43 H 0.073 0.927 44 H 0.349 0.651 45 H 0.042 0.958 46 H 0.086 0.914 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.087 0.913 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.836 -4.617 -22.866 31.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.097 4.097 3 C -0.202 4.202 4 C -0.201 4.201 5 C 0.230 3.770 6 O -0.287 6.287 7 C 0.258 3.742 8 O -0.378 6.378 9 N -0.348 5.348 10 C 0.013 3.987 11 C -0.188 4.188 12 C -0.121 4.121 13 C -0.059 4.059 14 N -0.301 5.301 15 C -0.082 4.082 16 C 0.226 3.774 17 O -0.467 6.467 18 N -0.201 5.201 19 C -0.429 4.429 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.757 3.243 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.207 1.207 27 C -0.177 4.177 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.099 0.901 37 H 0.245 0.755 38 H 0.137 0.863 39 H 0.096 0.904 40 H 0.102 0.898 41 H 0.125 0.875 42 H 0.045 0.955 43 H 0.091 0.909 44 H 0.168 0.832 45 H 0.060 0.940 46 H 0.104 0.896 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.105 0.895 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -19.760 -4.583 -23.461 31.015 hybrid contribution -0.717 0.458 1.570 1.786 sum -20.477 -4.126 -21.891 30.258 Atomic orbital electron populations 1.21793 0.92097 1.02839 1.02676 1.20966 0.97418 0.97512 0.93758 1.21922 1.03327 0.92277 1.02656 1.21914 1.03268 0.99678 0.95239 1.25036 0.88620 0.76408 0.86982 1.90417 1.58662 1.35952 1.43694 1.20958 0.90803 0.79935 0.82502 1.90728 1.56907 1.45714 1.44441 1.46069 1.08848 1.56071 1.23764 1.22745 0.79765 0.97407 0.98796 1.23624 0.99275 0.98088 0.97853 1.22431 0.98347 0.95410 0.95878 1.21915 0.92111 0.98684 0.93174 1.60066 1.44080 1.15139 1.10769 1.21672 0.97268 1.00848 0.88456 1.19827 0.87633 0.86619 0.83303 1.90523 1.54505 1.47889 1.53769 1.41873 1.30655 1.41804 1.05796 1.19767 1.08636 1.22157 0.92294 0.87854 1.25260 0.99010 0.98037 0.95661 1.69623 1.40572 1.41216 1.02948 0.85797 0.80435 0.79347 0.78756 1.19210 1.20789 1.20745 1.23374 0.99230 0.96998 0.98112 0.91929 0.91338 0.91977 0.90073 0.91051 0.92462 0.92549 0.91053 0.90118 0.75548 0.86254 0.90373 0.89775 0.87477 0.95521 0.90893 0.83157 0.93998 0.89623 0.77477 0.91947 0.89453 0.90273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.80 7.76 37.16 0.29 -0.51 16 2 C -0.09 -0.64 0.76 -155.66 -0.12 -0.76 16 3 C -0.14 -0.93 8.29 37.16 0.31 -0.62 16 4 C -0.14 -0.86 8.29 37.15 0.31 -0.56 16 5 C 0.36 3.03 6.03 -29.80 -0.18 2.85 16 6 O -0.42 -4.04 16.09 5.98 0.10 -3.95 16 7 C 0.48 4.40 7.55 -11.75 -0.09 4.31 16 8 O -0.50 -5.59 13.01 5.49 0.07 -5.52 16 9 N -0.70 -5.58 5.35 -53.57 -0.29 -5.87 16 10 C 0.12 0.96 4.21 -67.12 -0.28 0.68 16 11 C -0.15 -1.38 7.45 -25.77 -0.19 -1.57 16 12 C -0.10 -0.96 3.91 -89.67 -0.35 -1.31 16 13 C 0.07 0.81 5.52 -3.83 -0.02 0.79 16 14 N -0.67 -10.62 6.12 -115.06 -0.70 -11.33 16 15 C 0.05 0.89 6.17 -4.98 -0.03 0.85 16 16 C 0.44 10.49 7.82 -10.99 -0.09 10.40 16 17 O -0.58 -15.97 15.78 5.55 0.09 -15.88 16 18 N -0.56 -14.41 5.29 -10.96 -0.06 -14.46 16 19 C -0.30 -8.40 9.68 -14.93 -0.14 -8.55 16 20 H 0.10 3.05 7.16 -52.49 -0.38 2.68 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.62 13.05 55.50 0.72 -23.90 16 23 Si 0.93 21.13 29.55 -169.99 -5.02 16.11 16 24 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 C -0.14 -1.01 7.39 -25.92 -0.19 -1.20 16 28 H 0.06 0.40 8.10 -51.93 -0.42 -0.03 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.38 8.10 -51.93 -0.42 -0.04 16 31 H 0.08 0.64 6.43 -51.93 -0.33 0.31 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.08 0.60 6.43 -51.93 -0.33 0.26 16 37 H 0.41 2.77 8.18 -40.82 -0.33 2.43 16 38 H 0.12 1.09 7.50 -51.93 -0.39 0.70 16 39 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.08 0.77 7.90 -51.93 -0.41 0.36 16 41 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.03 0.29 7.85 -51.93 -0.41 -0.12 16 43 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.35 5.79 8.43 -39.29 -0.33 5.46 16 45 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 47 H 0.39 9.54 7.90 -40.82 -0.32 9.22 16 48 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 49 H 0.09 0.56 8.07 -51.93 -0.42 0.14 16 50 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 411.80 15.07 6.21 6.21 Total: -1.00 -32.42 411.80 -8.05 -40.47 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: -8.28 Total: 12.83 kcal Atomic # 6 Polarization: 6.17 SS G_CDS: -0.88 Total: 5.29 kcal Atomic # 7 Polarization: -55.23 SS G_CDS: -0.33 Total: -55.55 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: 0.26 Total: -25.35 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -32.42 -8.05 -40.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755207364.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.158 kcal (2) G-P(sol) polarization free energy of solvation -32.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds