Wall clock time and date at job start Sat Apr 11 2020 05:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.46951 * 2 1 4 4 C 1.52992 * 109.47360 * 239.99558 * 2 1 3 5 5 C 1.50704 * 109.46886 * 119.99361 * 2 1 3 6 6 O 1.20781 * 120.00028 * 0.02562 * 5 2 1 7 7 C 1.49094 * 119.99830 * 180.02562 * 5 2 1 8 8 O 1.21360 * 120.00006 * 359.97438 * 7 5 2 9 9 N 1.34780 * 119.99650 * 180.02562 * 7 5 2 10 10 C 1.46497 * 119.99653 * 179.97438 * 9 7 5 11 11 C 1.53786 * 113.61643 * 105.85894 * 10 9 7 12 12 C 1.54049 * 86.98426 * 140.01639 * 11 10 9 13 13 C 1.53002 * 113.62024 * 220.02020 * 12 11 10 14 14 N 1.46894 * 109.47340 * 272.50033 * 13 12 11 15 15 C 1.46903 * 111.00180 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47213 * 179.97438 * 15 14 13 17 17 O 1.21292 * 119.99953 * 359.97438 * 16 15 14 18 18 N 1.34775 * 120.00191 * 180.02562 * 16 15 14 19 19 C 1.37102 * 120.00427 * 179.97438 * 18 16 15 20 20 H 1.08001 * 119.99695 * 359.97438 * 19 18 16 21 21 C 1.38947 * 120.00062 * 179.97438 * 19 18 16 22 22 N 1.31409 * 120.00007 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99680 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47133 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47047 * 120.00256 * 23 21 19 26 26 H 1.48497 * 109.47019 * 240.00108 * 23 21 19 27 27 C 1.53781 * 113.61305 * 203.46742 * 10 9 7 28 28 H 1.08999 * 109.47694 * 300.00556 * 1 2 3 29 29 H 1.09003 * 109.46916 * 60.00750 * 1 2 3 30 30 H 1.08996 * 109.47136 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46985 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.46698 * 299.99383 * 3 2 1 33 33 H 1.08992 * 109.47725 * 59.99808 * 3 2 1 34 34 H 1.09005 * 109.47101 * 299.99987 * 4 2 1 35 35 H 1.08995 * 109.47444 * 60.00303 * 4 2 1 36 36 H 1.09006 * 109.46885 * 180.02562 * 4 2 1 37 37 H 0.96995 * 120.00200 * 359.97438 * 9 7 5 38 38 H 1.09002 * 112.84935 * 334.66222 * 10 9 7 39 39 H 1.08992 * 113.61675 * 254.61383 * 11 10 9 40 40 H 1.09000 * 113.60973 * 25.51671 * 11 10 9 41 41 H 1.08996 * 113.68970 * 89.12734 * 12 11 10 42 42 H 1.08997 * 109.47064 * 32.50151 * 13 12 11 43 43 H 1.09006 * 109.47182 * 152.49563 * 13 12 11 44 44 H 1.00896 * 111.00096 * 56.04265 * 14 13 12 45 45 H 1.08998 * 109.46937 * 299.99994 * 15 14 13 46 46 H 1.09002 * 109.46820 * 59.99787 * 15 14 13 47 47 H 0.96997 * 119.99843 * 359.97438 * 18 16 15 48 48 H 0.97004 * 119.99929 * 179.97438 * 22 21 19 49 49 H 1.08999 * 113.61567 * 334.48111 * 27 10 9 50 50 H 1.08998 * 113.61196 * 105.38466 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 2.0322 -0.7103 1.2306 6 8 1.2473 -1.1696 2.0254 7 6 3.4981 -0.8460 1.4668 8 8 4.2867 -0.3849 0.6680 9 7 3.9472 -1.4817 2.5672 10 6 5.3875 -1.6155 2.7990 11 6 5.9228 -0.6876 3.9024 12 6 6.8063 -1.8666 4.3524 13 6 6.9096 -2.0101 5.8722 14 7 8.0133 -1.1775 6.3687 15 6 8.1432 -1.2909 7.8276 16 6 9.2833 -0.4255 8.2991 17 8 9.9248 0.2216 7.4986 18 7 9.5907 -0.3714 9.6102 19 6 10.6282 0.4155 10.0393 20 1 11.1995 0.9917 9.3265 21 6 10.9448 0.4716 11.3910 22 7 10.2500 -0.2299 12.2582 23 14 12.3589 1.5432 11.9753 24 1 12.9775 2.2250 10.8102 25 1 11.8482 2.5593 12.9303 26 1 13.3754 0.6967 12.6500 27 6 5.7570 -2.7934 3.7161 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 3.1299 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8901 33 1 1.6766 1.9564 0.8899 34 1 1.6767 -1.7490 -1.2490 35 1 1.6768 -0.2076 -2.1391 36 1 3.1300 -0.7216 -1.2488 37 1 3.3169 -1.8506 3.2055 38 1 5.9696 -1.5799 1.8781 39 1 6.4880 0.1629 3.5215 40 1 5.1691 -0.4019 4.6362 41 1 7.7766 -1.9007 3.8571 42 1 5.9756 -1.6872 6.3319 43 1 7.0982 -3.0531 6.1267 44 1 7.8943 -0.2153 6.0896 45 1 7.2178 -0.9632 8.3012 46 1 8.3406 -2.3289 8.0952 47 1 9.0779 -0.8892 10.2504 48 1 10.4712 -0.1909 13.2019 49 1 4.9582 -3.0823 4.3990 50 1 6.1885 -3.6417 3.1848 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755207364.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:48 Heat of formation + Delta-G solvation = -120.291514 kcal Electronic energy + Delta-G solvation = -28516.307062 eV Core-core repulsion = 24350.014139 eV Total energy + Delta-G solvation = -4166.292923 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.06466 -40.62503 -40.08992 -39.21032 -37.05453 -36.46909 -35.77238 -34.33708 -33.26253 -29.91050 -28.47639 -28.26610 -27.57210 -26.79999 -26.65148 -25.16517 -23.35048 -21.93623 -21.24653 -20.87098 -19.95406 -19.79961 -18.57006 -18.06770 -17.49895 -17.05779 -16.83458 -16.53869 -16.52255 -16.29401 -15.85406 -15.79289 -15.51281 -15.17667 -14.91896 -14.71668 -14.50061 -14.21075 -13.72839 -13.60605 -13.56170 -13.45506 -13.40964 -13.12521 -13.07793 -13.03664 -12.80278 -12.74266 -12.60141 -12.56162 -12.41518 -12.12414 -12.00678 -11.95904 -11.77611 -11.57796 -11.52107 -11.24559 -10.38895 -10.33522 -10.18281 -10.02105 -9.30505 -8.47510 -5.96330 -0.15986 1.36350 1.41726 1.56005 1.63965 1.84841 2.04630 2.28999 2.91431 3.06026 3.19834 3.47669 3.49128 3.50535 3.71074 3.81319 3.82843 3.86224 3.91371 4.25636 4.32626 4.35843 4.50007 4.53694 4.61021 4.65324 4.70663 4.74733 4.76518 4.82869 4.84747 4.88347 4.90560 4.91199 4.97659 5.00325 5.10535 5.18350 5.21416 5.30476 5.33441 5.40580 5.53416 5.74664 5.90531 6.13005 6.30316 6.42796 6.59642 6.86305 7.12100 7.55627 8.11137 8.70081 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.025770 B = 0.001494 C = 0.001477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.289087 B =18735.784381 C =18952.439019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.096 4.096 3 C -0.142 4.142 4 C -0.140 4.140 5 C 0.364 3.636 6 O -0.432 6.432 7 C 0.471 3.529 8 O -0.525 6.525 9 N -0.687 5.687 10 C 0.119 3.881 11 C -0.150 4.150 12 C -0.101 4.101 13 C 0.073 3.927 14 N -0.685 5.685 15 C 0.065 3.935 16 C 0.436 3.564 17 O -0.624 6.624 18 N -0.573 5.573 19 C -0.335 4.335 20 H 0.078 0.922 21 C -0.012 4.012 22 N -0.920 5.920 23 Si 0.993 3.007 24 H -0.274 1.274 25 H -0.270 1.270 26 H -0.270 1.270 27 C -0.120 4.120 28 H 0.056 0.944 29 H 0.086 0.914 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.089 0.911 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.088 0.912 36 H 0.064 0.936 37 H 0.416 0.584 38 H 0.110 0.890 39 H 0.062 0.938 40 H 0.088 0.912 41 H 0.094 0.906 42 H 0.041 0.959 43 H 0.082 0.918 44 H 0.342 0.658 45 H 0.065 0.935 46 H 0.105 0.895 47 H 0.397 0.603 48 H 0.278 0.722 49 H 0.104 0.896 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.234 -5.364 -22.962 32.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.097 4.097 3 C -0.199 4.199 4 C -0.198 4.198 5 C 0.234 3.766 6 O -0.302 6.302 7 C 0.254 3.746 8 O -0.402 6.402 9 N -0.340 5.340 10 C 0.015 3.985 11 C -0.189 4.189 12 C -0.120 4.120 13 C -0.056 4.056 14 N -0.317 5.317 15 C -0.068 4.068 16 C 0.224 3.776 17 O -0.511 6.511 18 N -0.211 5.211 19 C -0.465 4.465 20 H 0.096 0.904 21 C -0.212 4.212 22 N -0.561 5.561 23 Si 0.817 3.183 24 H -0.199 1.199 25 H -0.195 1.195 26 H -0.196 1.196 27 C -0.159 4.159 28 H 0.075 0.925 29 H 0.105 0.895 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.108 0.892 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.107 0.893 36 H 0.083 0.917 37 H 0.254 0.746 38 H 0.128 0.872 39 H 0.081 0.919 40 H 0.106 0.894 41 H 0.112 0.888 42 H 0.059 0.941 43 H 0.101 0.899 44 H 0.160 0.840 45 H 0.083 0.917 46 H 0.123 0.877 47 H 0.231 0.769 48 H 0.087 0.913 49 H 0.122 0.878 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -21.193 -5.368 -23.539 32.126 hybrid contribution -0.296 0.687 1.566 1.736 sum -21.489 -4.681 -21.973 31.089 Atomic orbital electron populations 1.21787 0.91115 1.02877 1.03315 1.21048 0.98121 0.97429 0.93138 1.21903 1.02187 0.92305 1.03528 1.21894 1.02212 1.00118 0.95539 1.25215 0.87967 0.76068 0.87352 1.90411 1.58717 1.36764 1.44307 1.21211 0.91204 0.79676 0.82481 1.90723 1.57491 1.46719 1.45255 1.46048 1.08916 1.55481 1.23566 1.22645 0.79768 0.97795 0.98308 1.23617 0.99242 0.97708 0.98294 1.22340 0.98437 0.96545 0.94701 1.22019 0.91184 0.98251 0.94107 1.60082 1.46709 1.15282 1.09595 1.21537 0.95260 1.00216 0.89741 1.20946 0.88278 0.86104 0.82311 1.90490 1.56313 1.49628 1.54659 1.41940 1.30498 1.41921 1.06692 1.19717 1.10254 1.23813 0.92715 0.90393 1.26035 1.01113 0.98873 0.95178 1.69676 1.41402 1.41596 1.03402 0.84864 0.77524 0.77883 0.78013 1.19880 1.19542 1.19558 1.23299 0.98567 0.96441 0.97555 0.92532 0.89467 0.92232 0.91789 0.89250 0.92547 0.92170 0.89306 0.91708 0.74632 0.87250 0.91928 0.89385 0.88761 0.94074 0.89938 0.83966 0.91681 0.87707 0.76943 0.91281 0.87766 0.89143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.36 7.76 71.98 0.56 -0.80 16 2 C -0.10 -1.20 0.76 -52.93 -0.04 -1.24 16 3 C -0.14 -1.72 8.29 71.98 0.60 -1.12 16 4 C -0.14 -1.53 8.29 71.98 0.60 -0.94 16 5 C 0.36 5.90 6.03 28.61 0.17 6.07 16 6 O -0.43 -8.00 16.09 -1.51 -0.02 -8.02 16 7 C 0.47 8.57 7.55 87.16 0.66 9.23 16 8 O -0.52 -11.83 13.01 -3.28 -0.04 -11.87 16 9 N -0.69 -10.39 5.35 -441.74 -2.37 -12.75 16 10 C 0.12 1.85 4.21 45.52 0.19 2.05 16 11 C -0.15 -2.68 7.45 31.21 0.23 -2.45 16 12 C -0.10 -1.79 3.91 -10.18 -0.04 -1.83 16 13 C 0.07 1.53 5.52 86.30 0.48 2.00 16 14 N -0.68 -21.15 6.12 -517.94 -3.17 -24.32 16 15 C 0.06 2.20 6.17 85.56 0.53 2.73 16 16 C 0.44 20.95 7.82 87.66 0.69 21.64 16 17 O -0.62 -35.14 15.78 -3.07 -0.05 -35.19 16 18 N -0.57 -29.65 5.29 -306.99 -1.62 -31.27 16 19 C -0.34 -19.25 9.68 84.04 0.81 -18.44 16 20 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 21 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 22 N -0.92 -49.69 13.05 21.66 0.28 -49.41 16 23 Si 0.99 43.15 29.55 68.60 2.03 45.18 16 24 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 25 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 26 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 27 C -0.12 -1.48 7.39 31.12 0.23 -1.25 16 28 H 0.06 0.65 8.10 -2.39 -0.02 0.63 16 29 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.06 0.64 8.10 -2.39 -0.02 0.62 16 31 H 0.06 1.02 6.43 -2.39 -0.02 1.00 16 32 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 35 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.06 0.94 6.43 -2.38 -0.02 0.93 16 37 H 0.42 5.01 8.18 -92.71 -0.76 4.25 16 38 H 0.11 1.98 7.50 -2.39 -0.02 1.96 16 39 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.09 1.51 7.90 -2.39 -0.02 1.49 16 41 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.04 0.77 7.85 -2.39 -0.02 0.75 16 43 H 0.08 1.59 8.14 -2.38 -0.02 1.58 16 44 H 0.34 11.34 8.43 -89.70 -0.76 10.59 16 45 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 46 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 47 H 0.40 19.37 7.90 -92.71 -0.73 18.64 16 48 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 49 H 0.10 0.99 8.07 -2.39 -0.02 0.97 16 50 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -70.72 411.80 -0.11 -70.83 By element: Atomic # 1 Polarization: 42.64 SS G_CDS: -1.28 Total: 41.37 kcal Atomic # 6 Polarization: 9.33 SS G_CDS: 6.13 Total: 15.46 kcal Atomic # 7 Polarization: -110.87 SS G_CDS: -6.88 Total: -117.75 kcal Atomic # 8 Polarization: -54.97 SS G_CDS: -0.12 Total: -55.08 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -70.72 -0.11 -70.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755207364.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.462 kcal (2) G-P(sol) polarization free energy of solvation -70.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds