Wall clock time and date at job start Sat Apr 11 2020 05:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.34330 * 126.44286 * 2 1 4 4 N 1.34484 * 107.66836 * 179.73187 * 3 2 1 5 5 C 1.30250 * 108.70027 * 0.27078 * 4 3 2 6 6 C 1.50702 * 125.62048 * 179.97438 * 5 4 3 7 7 O 1.42901 * 109.46887 * 90.02204 * 6 5 4 8 8 C 1.42910 * 113.99486 * 180.02562 * 7 6 5 9 9 C 1.50704 * 109.46871 * 179.97438 * 8 7 6 10 10 O 1.21280 * 120.00071 * 359.97438 * 9 8 7 11 11 N 1.34770 * 119.99884 * 179.97438 * 9 8 7 12 12 C 1.46502 * 120.00103 * 0.02562 * 11 9 8 13 13 C 1.46502 * 119.99863 * 179.97438 * 11 9 8 14 14 C 1.52997 * 109.46999 * 90.00286 * 13 11 9 15 15 C 1.52998 * 109.47231 * 300.00043 * 14 13 11 16 16 C 1.53006 * 109.47190 * 59.99982 * 14 13 11 17 17 C 1.53001 * 109.46997 * 179.97438 * 14 13 11 18 18 N 1.46503 * 109.47249 * 180.02562 * 17 14 13 19 19 C 1.36933 * 120.00399 * 180.02562 * 18 17 14 20 20 H 1.08001 * 119.99849 * 359.97438 * 19 18 17 21 21 C 1.38814 * 120.00182 * 179.97438 * 19 18 17 22 22 N 1.31618 * 119.99770 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99853 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47095 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47161 * 120.00401 * 23 21 19 26 26 H 1.48500 * 109.46755 * 240.00207 * 23 21 19 27 27 O 1.33972 * 108.76227 * 359.97438 * 5 4 3 28 28 H 1.09006 * 109.46964 * 89.99849 * 1 2 3 29 29 H 1.09001 * 109.47520 * 209.99424 * 1 2 3 30 30 H 1.09003 * 109.47512 * 329.99686 * 1 2 3 31 31 H 1.08002 * 126.16884 * 0.02562 * 3 2 1 32 32 H 1.09007 * 109.47129 * 210.02172 * 6 5 4 33 33 H 1.08997 * 109.46764 * 330.01876 * 6 5 4 34 34 H 1.08993 * 109.46934 * 299.99659 * 8 7 6 35 35 H 1.08996 * 109.47040 * 60.00164 * 8 7 6 36 36 H 1.08996 * 109.47389 * 89.99586 * 12 11 9 37 37 H 1.08999 * 109.47212 * 209.99802 * 12 11 9 38 38 H 1.09004 * 109.46971 * 329.99708 * 12 11 9 39 39 H 1.09003 * 109.46876 * 210.00303 * 13 11 9 40 40 H 1.08998 * 109.47156 * 330.00165 * 13 11 9 41 41 H 1.09001 * 109.47151 * 59.99449 * 15 14 13 42 42 H 1.09000 * 109.47203 * 180.02562 * 15 14 13 43 43 H 1.09007 * 109.46999 * 300.00404 * 15 14 13 44 44 H 1.09004 * 109.46861 * 60.00115 * 16 14 13 45 45 H 1.09000 * 109.46873 * 179.97438 * 16 14 13 46 46 H 1.09001 * 109.46674 * 300.00233 * 16 14 13 47 47 H 1.09003 * 109.46887 * 300.00022 * 17 14 13 48 48 H 1.08998 * 109.47147 * 59.99885 * 17 14 13 49 49 H 0.97001 * 119.99628 * 359.97438 * 18 17 14 50 50 H 0.97002 * 119.99448 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3049 1.0806 0.0000 4 7 3.5782 0.6478 0.0060 5 6 3.5765 -0.6547 0.0038 6 6 4.8004 -1.5340 0.0082 7 8 5.1804 -1.8146 1.3569 8 6 6.3372 -2.6456 1.4739 9 6 6.6457 -2.8747 2.9311 10 8 5.9444 -2.3753 3.7853 11 7 7.7009 -3.6347 3.2850 12 6 8.5484 -4.2376 2.2531 13 6 8.0012 -3.8570 4.7015 14 6 7.2640 -5.1058 5.1892 15 6 5.7570 -4.9102 5.0119 16 6 7.7202 -6.3181 4.3748 17 6 7.5781 -5.3384 6.6685 18 7 6.8727 -6.5345 7.1354 19 6 7.0027 -6.9421 8.4361 20 1 7.6256 -6.3820 9.1178 21 6 6.3338 -8.0752 8.8786 22 7 5.5751 -8.7580 8.0477 23 14 6.5107 -8.6307 10.6533 24 1 7.4134 -7.6992 11.3760 25 1 5.1768 -8.6345 11.3060 26 1 7.0828 -10.0006 10.6884 27 8 2.3074 -1.0840 -0.0031 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5137 30 1 -0.3634 0.8900 0.5139 31 1 1.9821 2.1113 0.0004 32 1 4.5788 -2.4678 -0.5087 33 1 5.6173 -1.0221 -0.5005 34 1 6.1478 -3.6023 0.9874 35 1 7.1857 -2.1564 0.9957 36 1 9.3580 -3.5525 2.0019 37 1 8.9662 -5.1724 2.6266 38 1 7.9513 -4.4364 1.3631 39 1 9.0749 -3.9964 4.8278 40 1 7.6762 -2.9934 5.2817 41 1 5.5336 -4.7447 3.9580 42 1 5.2317 -5.7997 5.3598 43 1 5.4319 -4.0465 5.5921 44 1 8.7939 -6.4574 4.5011 45 1 7.1953 -7.2078 4.7226 46 1 7.4968 -6.1526 3.3208 47 1 8.6518 -5.4779 6.7943 48 1 7.2534 -4.4748 7.2490 49 1 6.3129 -7.0373 6.5232 50 1 5.1075 -9.5495 8.3570 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755283795.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:53 Heat of formation + Delta-G solvation = -34.776894 kcal Electronic energy + Delta-G solvation = -29621.712734 eV Core-core repulsion = 25459.128003 eV Total energy + Delta-G solvation = -4162.584730 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.65266 -40.31801 -38.32507 -37.03513 -35.11330 -35.05466 -33.18920 -33.02777 -30.45840 -29.92602 -28.31488 -27.70863 -26.50124 -25.75115 -25.51527 -24.74110 -22.65622 -22.43407 -21.44174 -19.63932 -18.36416 -17.90826 -17.46600 -17.24051 -16.93006 -16.63898 -16.53216 -15.75572 -15.37563 -15.06143 -14.70805 -14.47947 -14.03876 -13.81891 -13.76144 -13.51959 -13.45961 -13.26353 -13.14123 -12.80238 -12.74761 -12.62514 -12.52423 -12.28186 -12.18601 -12.02732 -11.63288 -11.21369 -11.09144 -10.93787 -10.87205 -10.79780 -10.68846 -10.25534 -10.23727 -10.17283 -9.92666 -9.66191 -9.59424 -9.07455 -8.81780 -8.56552 -6.83796 -5.71110 -2.98293 0.96821 2.05891 2.32854 2.58098 2.74921 3.45338 3.46841 3.52526 3.54742 3.91488 4.32806 4.39677 4.57875 4.60221 4.64768 4.68295 4.73063 4.80687 4.95433 4.96506 5.03429 5.12228 5.17038 5.18915 5.34991 5.43864 5.48881 5.49045 5.61123 5.69756 5.74375 5.93134 5.95296 5.99606 6.13568 6.18210 6.31392 6.41224 6.50090 6.57785 6.66588 6.78717 6.82651 6.98901 7.03862 7.31854 7.37755 7.76159 8.17994 8.48562 9.59667 10.19180 10.53960 11.52171 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014756 B = 0.002058 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.019402 B =13598.925704 C =14883.002167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.037 4.037 3 C -0.046 4.046 4 N -0.458 5.458 5 C 0.187 3.813 6 C 0.162 3.838 7 O -0.355 6.355 8 C 0.047 3.953 9 C 0.512 3.488 10 O -0.506 6.506 11 N -0.608 5.608 12 C 0.069 3.931 13 C 0.129 3.871 14 C -0.086 4.086 15 C -0.123 4.123 16 C -0.136 4.136 17 C 0.165 3.835 18 N -0.728 5.728 19 C -0.234 4.234 20 H 0.070 0.930 21 C -0.017 4.017 22 N -0.935 5.935 23 Si 0.906 3.094 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.293 1.293 27 O -0.193 6.193 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.186 0.814 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.056 0.944 37 H 0.084 0.916 38 H 0.067 0.933 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.036 0.964 42 H 0.059 0.941 43 H 0.056 0.944 44 H 0.049 0.951 45 H 0.067 0.933 46 H 0.045 0.955 47 H 0.018 0.982 48 H 0.020 0.980 49 H 0.385 0.615 50 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.928 16.011 -24.629 29.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.090 4.090 3 C -0.185 4.185 4 N -0.189 5.189 5 C -0.019 4.019 6 C 0.084 3.916 7 O -0.273 6.273 8 C -0.033 4.033 9 C 0.298 3.702 10 O -0.379 6.379 11 N -0.344 5.344 12 C -0.074 4.074 13 C 0.007 3.993 14 C -0.088 4.088 15 C -0.180 4.180 16 C -0.193 4.193 17 C 0.037 3.963 18 N -0.373 5.373 19 C -0.366 4.366 20 H 0.088 0.912 21 C -0.212 4.212 22 N -0.584 5.584 23 Si 0.738 3.262 24 H -0.206 1.206 25 H -0.220 1.220 26 H -0.220 1.220 27 O -0.080 6.080 28 H 0.104 0.896 29 H 0.100 0.900 30 H 0.113 0.887 31 H 0.203 0.797 32 H 0.101 0.899 33 H 0.115 0.885 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.075 0.925 37 H 0.102 0.898 38 H 0.086 0.914 39 H 0.096 0.904 40 H 0.103 0.897 41 H 0.056 0.944 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.068 0.932 45 H 0.086 0.914 46 H 0.064 0.936 47 H 0.035 0.965 48 H 0.037 0.963 49 H 0.220 0.780 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.807 16.653 -23.821 29.076 hybrid contribution -0.562 -1.062 0.541 1.317 sum -1.369 15.592 -23.280 28.053 Atomic orbital electron populations 1.20326 0.83699 1.04817 1.03881 1.23599 0.95235 0.84499 1.05709 1.23123 0.87570 1.00527 1.07298 1.70401 1.23355 1.09037 1.16122 1.25481 0.83917 0.89910 1.02640 1.20464 0.89113 0.96419 0.85596 1.88097 1.45687 1.69728 1.23766 1.22333 0.89259 0.95709 0.95976 1.19976 0.80902 0.79250 0.90076 1.90781 1.47385 1.48171 1.51585 1.47682 1.28738 1.50257 1.07672 1.22004 0.94836 0.99426 0.91147 1.21579 0.99412 0.98795 0.79541 1.21119 0.96548 0.94232 0.96872 1.21713 0.94254 1.02156 0.99893 1.21891 1.00728 0.98476 0.98220 1.20587 0.95030 0.90796 0.89913 1.42396 1.56510 1.28180 1.10204 1.19293 1.23117 1.06734 0.87417 0.91207 1.24723 1.00220 0.98373 0.97905 1.69671 1.34852 1.19847 1.34013 0.86118 0.77168 0.78158 0.84784 1.20607 1.21951 1.21998 1.84398 1.17679 1.36612 1.69270 0.89632 0.89992 0.88706 0.79689 0.89889 0.88475 0.89814 0.89829 0.92518 0.89770 0.91419 0.90400 0.89704 0.94445 0.92166 0.92520 0.93204 0.91446 0.93638 0.96461 0.96255 0.78015 0.93673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.36 10.43 36.00 0.38 0.02 16 2 C -0.04 -0.35 7.39 -35.69 -0.26 -0.61 16 3 C -0.05 -0.46 11.80 -17.77 -0.21 -0.67 16 4 N -0.46 -5.77 11.29 -11.10 -0.13 -5.89 16 5 C 0.19 2.20 7.97 -12.95 -0.10 2.10 16 6 C 0.16 1.41 6.56 36.01 0.24 1.65 16 7 O -0.36 -4.41 9.86 -55.14 -0.54 -4.95 16 8 C 0.05 0.44 4.97 36.01 0.18 0.62 16 9 C 0.51 6.91 6.16 -10.99 -0.07 6.85 16 10 O -0.51 -9.35 14.27 -14.35 -0.20 -9.56 16 11 N -0.61 -7.02 2.40 -181.57 -0.44 -7.46 16 12 C 0.07 0.49 9.15 59.85 0.55 1.04 16 13 C 0.13 1.78 4.60 -4.04 -0.02 1.76 16 14 C -0.09 -1.45 0.60 -154.51 -0.09 -1.54 16 15 C -0.12 -2.31 6.97 37.16 0.26 -2.05 16 16 C -0.14 -2.10 7.05 37.16 0.26 -1.84 16 17 C 0.16 3.42 5.15 -4.04 -0.02 3.40 16 18 N -0.73 -18.77 5.00 -59.91 -0.30 -19.07 16 19 C -0.23 -6.70 9.99 -15.06 -0.15 -6.85 16 20 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 21 C -0.02 -0.49 5.50 -17.43 -0.10 -0.59 16 22 N -0.93 -28.76 13.06 55.49 0.72 -28.04 16 23 Si 0.91 22.92 29.55 -169.99 -5.02 17.89 16 24 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 26 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 27 O -0.19 -2.28 10.78 5.35 0.06 -2.22 16 28 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.19 1.24 8.06 -52.49 -0.42 0.82 16 32 H 0.08 0.49 8.14 -51.92 -0.42 0.06 16 33 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.56 7.40 -51.93 -0.38 0.17 16 35 H 0.08 0.51 8.11 -51.93 -0.42 0.09 16 36 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.08 0.62 6.05 -51.93 -0.31 0.31 16 38 H 0.07 0.34 6.44 -51.93 -0.33 0.01 16 39 H 0.08 0.91 8.07 -51.93 -0.42 0.49 16 40 H 0.08 1.32 7.42 -51.93 -0.39 0.93 16 41 H 0.04 0.65 6.15 -51.93 -0.32 0.33 16 42 H 0.06 1.27 6.86 -51.93 -0.36 0.91 16 43 H 0.06 1.16 7.73 -51.93 -0.40 0.76 16 44 H 0.05 0.71 8.08 -51.93 -0.42 0.29 16 45 H 0.07 1.26 6.86 -51.93 -0.36 0.90 16 46 H 0.04 0.58 5.99 -51.93 -0.31 0.27 16 47 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 48 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.38 10.38 5.36 -40.82 -0.22 10.16 16 50 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 401.68 15.07 6.05 6.05 Total: -1.00 -38.54 401.68 -6.95 -45.49 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -7.99 Total: 4.47 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: 0.84 Total: 3.28 kcal Atomic # 7 Polarization: -60.32 SS G_CDS: -0.14 Total: -60.45 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: -0.69 Total: -16.73 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -5.02 Total: 17.89 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -38.54 -6.95 -45.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755283795.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.714 kcal (2) G-P(sol) polarization free energy of solvation -38.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds