Wall clock time and date at job start Sat Apr 11 2020 05:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.34330 * 126.44286 * 2 1 4 4 N 1.34484 * 107.66836 * 179.73187 * 3 2 1 5 5 C 1.30250 * 108.70027 * 0.27078 * 4 3 2 6 6 C 1.50702 * 125.62048 * 179.97438 * 5 4 3 7 7 O 1.42901 * 109.46887 * 90.02204 * 6 5 4 8 8 C 1.42910 * 113.99486 * 180.02562 * 7 6 5 9 9 C 1.50704 * 109.46871 * 179.97438 * 8 7 6 10 10 O 1.21280 * 120.00071 * 359.97438 * 9 8 7 11 11 N 1.34770 * 119.99884 * 179.97438 * 9 8 7 12 12 C 1.46502 * 120.00103 * 0.02562 * 11 9 8 13 13 C 1.46502 * 119.99863 * 179.97438 * 11 9 8 14 14 C 1.52997 * 109.46999 * 90.00286 * 13 11 9 15 15 C 1.52998 * 109.47231 * 300.00043 * 14 13 11 16 16 C 1.53006 * 109.47190 * 59.99982 * 14 13 11 17 17 C 1.53001 * 109.46997 * 179.97438 * 14 13 11 18 18 N 1.46503 * 109.47249 * 180.02562 * 17 14 13 19 19 C 1.36933 * 120.00399 * 180.02562 * 18 17 14 20 20 H 1.08001 * 119.99849 * 359.97438 * 19 18 17 21 21 C 1.38814 * 120.00182 * 179.97438 * 19 18 17 22 22 N 1.31618 * 119.99770 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99853 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47095 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47161 * 120.00401 * 23 21 19 26 26 H 1.48500 * 109.46755 * 240.00207 * 23 21 19 27 27 O 1.33972 * 108.76227 * 359.97438 * 5 4 3 28 28 H 1.09006 * 109.46964 * 89.99849 * 1 2 3 29 29 H 1.09001 * 109.47520 * 209.99424 * 1 2 3 30 30 H 1.09003 * 109.47512 * 329.99686 * 1 2 3 31 31 H 1.08002 * 126.16884 * 0.02562 * 3 2 1 32 32 H 1.09007 * 109.47129 * 210.02172 * 6 5 4 33 33 H 1.08997 * 109.46764 * 330.01876 * 6 5 4 34 34 H 1.08993 * 109.46934 * 299.99659 * 8 7 6 35 35 H 1.08996 * 109.47040 * 60.00164 * 8 7 6 36 36 H 1.08996 * 109.47389 * 89.99586 * 12 11 9 37 37 H 1.08999 * 109.47212 * 209.99802 * 12 11 9 38 38 H 1.09004 * 109.46971 * 329.99708 * 12 11 9 39 39 H 1.09003 * 109.46876 * 210.00303 * 13 11 9 40 40 H 1.08998 * 109.47156 * 330.00165 * 13 11 9 41 41 H 1.09001 * 109.47151 * 59.99449 * 15 14 13 42 42 H 1.09000 * 109.47203 * 180.02562 * 15 14 13 43 43 H 1.09007 * 109.46999 * 300.00404 * 15 14 13 44 44 H 1.09004 * 109.46861 * 60.00115 * 16 14 13 45 45 H 1.09000 * 109.46873 * 179.97438 * 16 14 13 46 46 H 1.09001 * 109.46674 * 300.00233 * 16 14 13 47 47 H 1.09003 * 109.46887 * 300.00022 * 17 14 13 48 48 H 1.08998 * 109.47147 * 59.99885 * 17 14 13 49 49 H 0.97001 * 119.99628 * 359.97438 * 18 17 14 50 50 H 0.97002 * 119.99448 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3049 1.0806 0.0000 4 7 3.5782 0.6478 0.0060 5 6 3.5765 -0.6547 0.0038 6 6 4.8004 -1.5340 0.0082 7 8 5.1804 -1.8146 1.3569 8 6 6.3372 -2.6456 1.4739 9 6 6.6457 -2.8747 2.9311 10 8 5.9444 -2.3753 3.7853 11 7 7.7009 -3.6347 3.2850 12 6 8.5484 -4.2376 2.2531 13 6 8.0012 -3.8570 4.7015 14 6 7.2640 -5.1058 5.1892 15 6 5.7570 -4.9102 5.0119 16 6 7.7202 -6.3181 4.3748 17 6 7.5781 -5.3384 6.6685 18 7 6.8727 -6.5345 7.1354 19 6 7.0027 -6.9421 8.4361 20 1 7.6256 -6.3820 9.1178 21 6 6.3338 -8.0752 8.8786 22 7 5.5751 -8.7580 8.0477 23 14 6.5107 -8.6307 10.6533 24 1 7.4134 -7.6992 11.3760 25 1 5.1768 -8.6345 11.3060 26 1 7.0828 -10.0006 10.6884 27 8 2.3074 -1.0840 -0.0031 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5137 30 1 -0.3634 0.8900 0.5139 31 1 1.9821 2.1113 0.0004 32 1 4.5788 -2.4678 -0.5087 33 1 5.6173 -1.0221 -0.5005 34 1 6.1478 -3.6023 0.9874 35 1 7.1857 -2.1564 0.9957 36 1 9.3580 -3.5525 2.0019 37 1 8.9662 -5.1724 2.6266 38 1 7.9513 -4.4364 1.3631 39 1 9.0749 -3.9964 4.8278 40 1 7.6762 -2.9934 5.2817 41 1 5.5336 -4.7447 3.9580 42 1 5.2317 -5.7997 5.3598 43 1 5.4319 -4.0465 5.5921 44 1 8.7939 -6.4574 4.5011 45 1 7.1953 -7.2078 4.7226 46 1 7.4968 -6.1526 3.3208 47 1 8.6518 -5.4779 6.7943 48 1 7.2534 -4.4748 7.2490 49 1 6.3129 -7.0373 6.5232 50 1 5.1075 -9.5495 8.3570 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755283795.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:52 Heat of formation + Delta-G solvation = -63.830192 kcal Electronic energy + Delta-G solvation = -29622.972579 eV Core-core repulsion = 25459.128003 eV Total energy + Delta-G solvation = -4163.844576 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.40923 -41.33531 -39.26118 -38.28716 -36.41101 -35.85582 -34.90274 -33.72765 -32.28270 -30.77214 -29.20856 -28.66050 -27.83106 -27.27186 -26.34742 -25.88807 -24.25664 -23.40038 -22.18655 -20.68091 -19.83001 -19.14120 -18.68305 -18.22546 -17.77019 -17.49204 -17.38557 -16.79498 -16.56796 -16.26874 -15.85432 -15.56874 -15.42655 -15.17334 -15.06564 -14.44581 -14.32834 -14.18716 -14.03758 -13.90566 -13.85602 -13.69104 -13.32267 -13.23235 -13.14973 -12.98041 -12.91431 -12.81054 -12.54770 -12.46419 -12.42764 -12.23658 -12.06222 -11.67184 -11.66785 -11.63808 -11.48927 -10.95387 -10.88999 -10.71287 -9.77866 -9.56805 -8.97737 -7.95151 -5.22844 0.22514 1.35218 1.45477 1.46971 1.56953 1.62442 1.63055 1.91343 2.55685 2.77775 3.23035 3.38087 3.61687 3.76165 3.84261 3.91902 3.96711 3.99652 4.06758 4.15592 4.19313 4.27036 4.28095 4.43902 4.47821 4.48117 4.56672 4.61228 4.64761 4.69607 4.82592 4.85956 4.91503 4.93759 4.97370 5.02192 5.12896 5.15205 5.17676 5.19862 5.24714 5.43474 5.48812 5.53229 5.57937 5.86195 6.27615 6.44543 6.61158 7.23493 7.33901 8.11086 8.35056 9.28886 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014756 B = 0.002058 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.019402 B =13598.925704 C =14883.002167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.042 4.042 3 C -0.066 4.066 4 N -0.489 5.489 5 C 0.165 3.835 6 C 0.160 3.840 7 O -0.399 6.399 8 C 0.050 3.950 9 C 0.500 3.500 10 O -0.571 6.571 11 N -0.603 5.603 12 C 0.058 3.942 13 C 0.136 3.864 14 C -0.077 4.077 15 C -0.107 4.107 16 C -0.126 4.126 17 C 0.162 3.838 18 N -0.739 5.739 19 C -0.242 4.242 20 H 0.074 0.926 21 C -0.078 4.078 22 N -0.970 5.970 23 Si 0.974 3.026 24 H -0.267 1.267 25 H -0.296 1.296 26 H -0.290 1.290 27 O -0.212 6.212 28 H 0.106 0.894 29 H 0.079 0.921 30 H 0.115 0.885 31 H 0.211 0.789 32 H 0.112 0.888 33 H 0.123 0.877 34 H 0.118 0.882 35 H 0.124 0.876 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.108 0.892 40 H 0.060 0.940 41 H 0.050 0.950 42 H 0.028 0.972 43 H 0.029 0.971 44 H 0.067 0.933 45 H 0.029 0.971 46 H 0.076 0.924 47 H 0.032 0.968 48 H 0.005 0.995 49 H 0.376 0.624 50 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.657 16.283 -26.701 31.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.095 4.095 3 C -0.204 4.204 4 N -0.220 5.220 5 C -0.041 4.041 6 C 0.084 3.916 7 O -0.318 6.318 8 C -0.028 4.028 9 C 0.288 3.712 10 O -0.449 6.449 11 N -0.337 5.337 12 C -0.083 4.083 13 C 0.013 3.987 14 C -0.078 4.078 15 C -0.164 4.164 16 C -0.183 4.183 17 C 0.035 3.965 18 N -0.382 5.382 19 C -0.374 4.374 20 H 0.092 0.908 21 C -0.270 4.270 22 N -0.621 5.621 23 Si 0.804 3.196 24 H -0.191 1.191 25 H -0.223 1.223 26 H -0.217 1.217 27 O -0.099 6.099 28 H 0.124 0.876 29 H 0.098 0.902 30 H 0.133 0.867 31 H 0.228 0.772 32 H 0.130 0.870 33 H 0.140 0.860 34 H 0.135 0.865 35 H 0.141 0.859 36 H 0.101 0.899 37 H 0.104 0.896 38 H 0.115 0.885 39 H 0.126 0.874 40 H 0.079 0.921 41 H 0.069 0.931 42 H 0.047 0.953 43 H 0.048 0.952 44 H 0.086 0.914 45 H 0.049 0.951 46 H 0.095 0.905 47 H 0.050 0.950 48 H 0.023 0.977 49 H 0.209 0.791 50 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 0.835 16.939 -25.935 30.988 hybrid contribution -1.067 -1.060 1.146 1.891 sum -0.232 15.879 -24.789 29.439 Atomic orbital electron populations 1.20553 0.80811 1.05709 1.05467 1.24426 0.96852 0.83883 1.04297 1.23631 0.87065 1.02001 1.07730 1.70376 1.24783 1.09838 1.17009 1.26220 0.84744 0.90311 1.02802 1.20812 0.88736 0.97664 0.84408 1.88029 1.47060 1.70633 1.26073 1.22503 0.89876 0.97501 0.92936 1.20909 0.80275 0.78353 0.91661 1.90759 1.49685 1.50832 1.53669 1.47766 1.28765 1.49700 1.07444 1.22373 0.95399 0.99848 0.90679 1.21336 1.00336 0.95882 0.81161 1.21017 0.95307 0.96761 0.94711 1.21537 0.95799 0.99173 0.99940 1.21810 1.01234 0.95765 0.99530 1.20750 0.95017 0.88298 0.92460 1.42585 1.56828 1.29427 1.09408 1.19695 1.22480 1.06584 0.88677 0.90790 1.25569 1.00492 0.98854 1.02109 1.69832 1.36087 1.20311 1.35909 0.85052 0.76947 0.77742 0.79902 1.19100 1.22313 1.21736 1.84401 1.18210 1.37708 1.69554 0.87554 0.90171 0.86657 0.77245 0.86983 0.85966 0.86465 0.85868 0.89892 0.89576 0.88543 0.87429 0.92143 0.93146 0.95329 0.95218 0.91394 0.95134 0.90485 0.95017 0.97675 0.79069 0.94065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.61 10.43 71.23 0.74 0.13 16 2 C -0.04 -0.77 7.39 24.79 0.18 -0.59 16 3 C -0.07 -1.31 11.80 83.39 0.98 -0.32 16 4 N -0.49 -12.34 11.29 -303.82 -3.43 -15.77 16 5 C 0.17 3.86 7.97 88.34 0.70 4.57 16 6 C 0.16 2.52 6.56 71.24 0.47 2.99 16 7 O -0.40 -9.44 9.86 -129.94 -1.28 -10.72 16 8 C 0.05 0.78 4.97 71.24 0.35 1.14 16 9 C 0.50 12.82 6.16 87.66 0.54 13.36 16 10 O -0.57 -21.76 14.27 16.01 0.23 -21.54 16 11 N -0.60 -12.39 2.40 -846.76 -2.03 -14.42 16 12 C 0.06 0.55 9.15 127.77 1.17 1.72 16 13 C 0.14 3.59 4.60 86.38 0.40 3.99 16 14 C -0.08 -2.56 0.60 -52.18 -0.03 -2.59 16 15 C -0.11 -4.20 6.97 71.98 0.50 -3.69 16 16 C -0.13 -3.71 7.05 71.98 0.51 -3.20 16 17 C 0.16 6.80 5.15 86.38 0.44 7.25 16 18 N -0.74 -39.11 5.00 -343.44 -1.72 -40.82 16 19 C -0.24 -14.06 9.99 84.03 0.84 -13.22 16 20 H 0.07 4.14 7.83 -2.91 -0.02 4.11 16 21 C -0.08 -4.65 5.50 84.86 0.47 -4.18 16 22 N -0.97 -61.12 13.06 21.65 0.28 -60.84 16 23 Si 0.97 47.62 29.55 68.60 2.03 49.65 16 24 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 25 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 26 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 27 O -0.21 -5.02 10.78 -3.76 -0.04 -5.06 16 28 H 0.11 0.52 8.14 -2.38 -0.02 0.50 16 29 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.21 2.66 8.06 -2.91 -0.02 2.64 16 32 H 0.11 1.01 8.14 -2.38 -0.02 0.99 16 33 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.12 1.01 7.40 -2.39 -0.02 1.00 16 35 H 0.12 0.92 8.11 -2.39 -0.02 0.90 16 36 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 37 H 0.09 0.85 6.05 -2.39 -0.01 0.83 16 38 H 0.10 0.41 6.44 -2.38 -0.02 0.39 16 39 H 0.11 2.20 8.07 -2.39 -0.02 2.18 16 40 H 0.06 1.91 7.42 -2.39 -0.02 1.89 16 41 H 0.05 1.80 6.15 -2.39 -0.01 1.79 16 42 H 0.03 1.26 6.86 -2.39 -0.02 1.24 16 43 H 0.03 1.28 7.73 -2.38 -0.02 1.27 16 44 H 0.07 1.75 8.08 -2.38 -0.02 1.73 16 45 H 0.03 1.13 6.86 -2.39 -0.02 1.11 16 46 H 0.08 1.75 5.99 -2.39 -0.01 1.74 16 47 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 48 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 49 H 0.38 21.10 5.36 -92.71 -0.50 20.60 16 50 H 0.25 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -89.89 401.68 2.76 -87.14 By element: Atomic # 1 Polarization: 24.59 SS G_CDS: 0.45 Total: 25.04 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: 8.27 Total: 7.34 kcal Atomic # 7 Polarization: -124.95 SS G_CDS: -6.90 Total: -131.85 kcal Atomic # 8 Polarization: -36.22 SS G_CDS: -1.09 Total: -37.32 kcal Atomic # 14 Polarization: 47.62 SS G_CDS: 2.03 Total: 49.65 kcal Total: -89.89 2.76 -87.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755283795.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.305 kcal (2) G-P(sol) polarization free energy of solvation -89.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds