Wall clock time and date at job start Sat Apr 11 2020 05:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50694 * 120.00282 * 2 1 4 4 C 1.50702 * 119.99794 * 180.02562 * 2 1 3 5 5 C 1.52998 * 109.47267 * 265.61835 * 4 2 1 6 6 H 1.09001 * 109.46852 * 306.00304 * 5 4 2 7 7 N 1.46497 * 109.47176 * 65.99931 * 5 4 2 8 8 C 1.34773 * 120.00463 * 261.16618 * 7 5 4 9 9 C 1.50701 * 119.99991 * 179.97438 * 8 7 5 10 10 O 1.21280 * 119.99939 * 0.02562 * 8 7 5 11 11 C 1.50694 * 109.47388 * 186.00538 * 5 4 2 12 12 O 1.21283 * 120.00312 * 239.99804 * 11 5 4 13 13 N 1.34783 * 119.99992 * 59.99881 * 11 5 4 14 14 C 1.46503 * 119.99681 * 175.05192 * 13 11 5 15 15 C 1.52994 * 112.94626 * 65.35537 * 14 13 11 16 16 C 1.52998 * 109.47643 * 54.34630 * 15 14 13 17 17 O 1.42894 * 109.47305 * 184.62919 * 16 15 14 18 18 C 1.53949 * 113.73639 * 196.94316 * 14 13 11 19 19 N 1.47817 * 86.03499 * 90.88299 * 18 14 13 20 20 C 1.36936 * 134.45654 * 204.64359 * 19 18 14 21 21 H 1.08002 * 119.99962 * 179.86298 * 20 19 18 22 22 C 1.38814 * 119.99824 * 359.86589 * 20 19 18 23 23 N 1.31612 * 120.00212 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99733 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46953 * 89.99926 * 24 22 20 26 26 H 1.48500 * 109.47175 * 209.99813 * 24 22 20 27 27 H 1.48501 * 109.47453 * 330.00201 * 24 22 20 28 28 C 1.47577 * 91.05282 * 24.54747 * 19 18 14 29 29 H 1.08004 * 120.00363 * 359.97438 * 1 2 3 30 30 H 1.08000 * 120.00614 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47233 * 275.04242 * 3 2 1 32 32 H 1.09004 * 109.47274 * 35.03728 * 3 2 1 33 33 H 1.09001 * 109.47797 * 155.03837 * 3 2 1 34 34 H 1.08998 * 109.47071 * 145.61843 * 4 2 1 35 35 H 1.08998 * 109.47356 * 25.62157 * 4 2 1 36 36 H 0.97009 * 119.99537 * 81.17074 * 7 5 4 37 37 H 1.09000 * 109.47361 * 359.97438 * 9 8 7 38 38 H 1.09002 * 109.46932 * 120.00264 * 9 8 7 39 39 H 1.09001 * 109.47079 * 240.00020 * 9 8 7 40 40 H 0.96999 * 119.99719 * 355.04815 * 13 11 5 41 41 H 1.08999 * 109.47140 * 174.34909 * 15 14 13 42 42 H 1.09008 * 109.47074 * 294.34174 * 15 14 13 43 43 H 1.09008 * 109.46830 * 304.63041 * 16 15 14 44 44 H 1.08998 * 109.47173 * 64.62402 * 16 15 14 45 45 H 0.96704 * 113.99998 * 180.02562 * 17 16 15 46 46 H 1.09002 * 113.77026 * 205.14027 * 18 14 13 47 47 H 1.09000 * 113.77016 * 336.54776 * 18 14 13 48 48 H 0.97005 * 120.00097 * 180.02562 * 23 22 20 49 49 H 1.08999 * 113.77253 * 221.15335 * 28 19 18 50 50 H 1.09000 * 113.87298 * 89.76539 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.0634 -1.3051 -0.0006 5 6 2.4139 -1.6924 1.4375 6 1 2.9435 -0.8690 1.9166 7 7 1.1837 -1.9793 2.1796 8 6 0.6463 -1.0396 2.9824 9 6 -0.6195 -1.3346 3.7452 10 8 1.1807 0.0437 3.0901 11 6 3.2921 -2.9169 1.4282 12 8 2.9266 -3.9297 1.9865 13 7 4.4840 -2.8866 0.7995 14 6 5.3849 -4.0390 0.8818 15 6 4.8198 -5.2876 0.2019 16 6 4.4416 -4.9549 -1.2428 17 8 3.8152 -6.0895 -1.8446 18 6 6.8372 -3.7198 0.4832 19 7 7.0559 -3.4208 1.9142 20 6 7.9436 -2.6410 2.6063 21 1 7.8912 -2.5893 3.6838 22 6 8.9108 -1.9168 1.9229 23 7 8.9744 -1.9793 0.6098 24 14 10.1214 -0.8524 2.8670 25 1 11.3218 -1.6555 3.2124 26 1 10.5242 0.3036 2.0265 27 1 9.4805 -0.3594 4.1125 28 6 5.9325 -4.2978 2.2971 29 1 -0.5401 0.9353 0.0004 30 1 -0.5401 -0.9352 0.0004 31 1 2.1670 1.6649 -1.0237 32 1 1.5165 2.0405 0.5900 33 1 3.0520 1.1539 0.4337 34 1 2.9796 -1.1955 -0.5809 35 1 1.4426 -2.0829 -0.4453 36 1 0.7561 -2.8457 2.0931 37 1 -0.9500 -2.3491 3.5223 38 1 -0.4295 -1.2406 4.8144 39 1 -1.3946 -0.6273 3.4504 40 1 4.7451 -2.1019 0.2926 41 1 5.5719 -6.0765 0.2081 42 1 3.9345 -5.6255 0.7407 43 1 3.7516 -4.1111 -1.2526 44 1 5.3400 -4.6961 -1.8031 45 1 3.5484 -5.9501 -2.7636 46 1 7.3949 -4.5852 0.1250 47 1 6.9333 -2.8509 -0.1680 48 1 9.6505 -1.4735 0.1323 49 1 5.3075 -3.8897 3.0914 50 1 6.2218 -5.3338 2.4735 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755336833.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:57 Heat of formation + Delta-G solvation = -52.705746 kcal Electronic energy + Delta-G solvation = -31550.509877 eV Core-core repulsion = 27387.147694 eV Total energy + Delta-G solvation = -4163.362184 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.57520 -39.45048 -37.84520 -36.56492 -36.45564 -34.07549 -33.57111 -32.14708 -30.99130 -30.44219 -28.61831 -27.30168 -27.03523 -25.11596 -24.68970 -23.44327 -21.42330 -20.75312 -20.29024 -18.90814 -18.61798 -17.55289 -17.29833 -16.73068 -16.56314 -15.97670 -15.34728 -15.25226 -15.06075 -14.72231 -14.59408 -14.43552 -14.31237 -13.89505 -13.67937 -13.61712 -13.36696 -12.92884 -12.78328 -12.74574 -12.59512 -12.44537 -12.09404 -11.74614 -11.67261 -11.54605 -11.42233 -11.28415 -11.17386 -11.03411 -10.88492 -10.69213 -10.07101 -9.93061 -9.89863 -9.86099 -9.65419 -9.45838 -9.30487 -8.96382 -8.78782 -8.58024 -6.94963 -5.83763 -3.14965 2.14697 2.60275 2.84444 2.97803 3.36526 3.42503 3.43554 3.58401 4.31637 4.44313 4.56788 4.77017 4.82454 4.90166 5.02446 5.04934 5.10663 5.18794 5.22832 5.29302 5.35814 5.42413 5.44123 5.56708 5.59483 5.64363 5.69728 5.72866 5.77422 5.87483 5.89578 6.02507 6.21888 6.23265 6.31926 6.46175 6.49741 6.54339 6.57405 6.79651 6.82460 7.02821 7.23956 7.42620 7.47471 7.72926 7.81040 7.90293 8.21592 8.45738 8.98521 9.64592 10.51038 11.33637 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009001 B = 0.004071 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3110.190152 B = 6875.755805 C = 8270.209774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.105 4.105 3 C -0.117 4.117 4 C -0.093 4.093 5 C 0.129 3.871 6 H 0.123 0.877 7 N -0.706 5.706 8 C 0.515 3.485 9 C -0.169 4.169 10 O -0.541 6.541 11 C 0.511 3.489 12 O -0.536 6.536 13 N -0.684 5.684 14 C 0.125 3.875 15 C -0.115 4.115 16 C 0.082 3.918 17 O -0.577 6.577 18 C 0.167 3.833 19 N -0.607 5.607 20 C -0.219 4.219 21 H 0.079 0.921 22 C -0.006 4.006 23 N -0.924 5.924 24 Si 0.911 3.089 25 H -0.289 1.289 26 H -0.290 1.290 27 H -0.281 1.281 28 C 0.124 3.876 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.407 0.593 37 H 0.075 0.925 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.403 0.597 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.040 0.960 44 H 0.047 0.953 45 H 0.373 0.627 46 H 0.042 0.958 47 H 0.078 0.922 48 H 0.254 0.746 49 H 0.048 0.952 50 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.592 0.000 -4.930 19.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.105 4.105 3 C -0.174 4.174 4 C -0.132 4.132 5 C 0.020 3.980 6 H 0.140 0.860 7 N -0.359 5.359 8 C 0.302 3.698 9 C -0.229 4.229 10 O -0.418 6.418 11 C 0.296 3.704 12 O -0.413 6.413 13 N -0.334 5.334 14 C 0.037 3.963 15 C -0.154 4.154 16 C 0.004 3.996 17 O -0.382 6.382 18 C 0.041 3.959 19 N -0.334 5.334 20 C -0.346 4.346 21 H 0.097 0.903 22 C -0.202 4.202 23 N -0.571 5.571 24 Si 0.741 3.259 25 H -0.216 1.216 26 H -0.216 1.216 27 H -0.206 1.206 28 C -0.002 4.002 29 H 0.112 0.888 30 H 0.110 0.890 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.104 0.896 35 H 0.095 0.905 36 H 0.243 0.757 37 H 0.094 0.906 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.238 0.762 41 H 0.094 0.906 42 H 0.099 0.901 43 H 0.058 0.942 44 H 0.065 0.935 45 H 0.219 0.781 46 H 0.060 0.940 47 H 0.096 0.904 48 H 0.064 0.936 49 H 0.067 0.933 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -18.056 0.050 -3.769 18.446 hybrid contribution 0.719 0.720 -0.288 1.057 sum -17.338 0.770 -4.057 17.823 Atomic orbital electron populations 1.23540 0.95239 1.01275 1.03497 1.21507 0.95281 0.95100 0.98579 1.20821 1.00602 0.94501 1.01474 1.21071 1.01431 0.95703 0.95004 1.20788 0.86668 0.97155 0.93437 0.85973 1.45720 1.25965 1.17868 1.46367 1.20712 0.86329 0.84069 0.78663 1.21818 0.95660 1.03654 1.01732 1.90725 1.62983 1.23644 1.64458 1.20478 0.82157 0.89103 0.78672 1.90663 1.73279 1.32725 1.44680 1.45510 1.16601 1.19188 1.52113 1.22336 0.90862 0.84528 0.98563 1.21702 1.02459 0.97622 0.93630 1.22137 0.95701 0.87344 0.94405 1.86487 1.81364 1.39762 1.30558 1.22595 0.85424 0.98907 0.88988 1.45955 1.35583 1.49496 1.02334 1.19009 1.07301 1.17776 0.90517 0.90300 1.24719 0.99144 1.00603 0.95747 1.69771 1.36657 1.45305 1.05416 0.86138 0.81224 0.79798 0.78738 1.21623 1.21609 1.20643 1.22806 0.88934 0.94517 0.93989 0.88793 0.88981 0.91718 0.91746 0.91557 0.89604 0.90468 0.75737 0.90614 0.88800 0.88913 0.76158 0.90559 0.90093 0.94157 0.93472 0.78143 0.94001 0.90401 0.93629 0.93333 0.93912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.99 12.93 29.02 0.38 -1.62 16 2 C -0.10 -1.13 4.27 -101.07 -0.43 -1.56 16 3 C -0.12 -1.28 10.02 36.00 0.36 -0.92 16 4 C -0.09 -0.98 4.97 -27.88 -0.14 -1.12 16 5 C 0.13 1.66 2.63 -69.09 -0.18 1.47 16 6 H 0.12 1.84 7.18 -51.93 -0.37 1.47 16 7 N -0.71 -8.19 4.42 -54.94 -0.24 -8.43 16 8 C 0.52 6.28 6.75 -10.99 -0.07 6.21 16 9 C -0.17 -1.35 10.39 36.01 0.37 -0.98 16 10 O -0.54 -8.67 16.03 5.56 0.09 -8.58 16 11 C 0.51 7.78 6.73 -10.99 -0.07 7.71 16 12 O -0.54 -9.38 14.15 5.56 0.08 -9.30 16 13 N -0.68 -10.75 4.31 -49.07 -0.21 -10.96 16 14 C 0.12 2.23 0.62 -134.03 -0.08 2.14 16 15 C -0.11 -1.84 4.85 -26.74 -0.13 -1.97 16 16 C 0.08 1.11 6.87 37.16 0.26 1.37 16 17 O -0.58 -7.60 13.66 -35.23 -0.48 -8.08 16 18 C 0.17 3.58 6.76 -2.83 -0.02 3.56 16 19 N -0.61 -14.93 3.70 -177.49 -0.66 -15.59 16 20 C -0.22 -5.99 10.70 -15.06 -0.16 -6.15 16 21 H 0.08 2.15 7.83 -52.49 -0.41 1.73 16 22 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 23 N -0.92 -25.96 11.39 55.49 0.63 -25.33 16 24 Si 0.91 21.84 29.55 -169.99 -5.02 16.82 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 27 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 28 C 0.12 2.61 7.89 -2.97 -0.02 2.59 16 29 H 0.09 0.90 8.05 -52.48 -0.42 0.48 16 30 H 0.09 0.84 8.00 -52.49 -0.42 0.42 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.73 8.10 -51.93 -0.42 0.31 16 33 H 0.07 0.77 8.09 -51.93 -0.42 0.35 16 34 H 0.09 0.84 7.30 -51.93 -0.38 0.46 16 35 H 0.08 0.75 8.00 -51.93 -0.42 0.34 16 36 H 0.41 4.16 8.04 -40.82 -0.33 3.83 16 37 H 0.07 0.45 7.91 -51.93 -0.41 0.04 16 38 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.40 5.92 7.87 -40.82 -0.32 5.60 16 41 H 0.08 1.24 8.07 -51.93 -0.42 0.82 16 42 H 0.08 1.41 6.84 -51.92 -0.36 1.05 16 43 H 0.04 0.51 7.49 -51.92 -0.39 0.12 16 44 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 45 H 0.37 3.05 9.12 45.56 0.42 3.47 16 46 H 0.04 0.93 8.05 -51.93 -0.42 0.51 16 47 H 0.08 1.78 7.11 -51.93 -0.37 1.42 16 48 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 49 H 0.05 1.07 7.65 -51.93 -0.40 0.67 16 50 H 0.04 0.88 8.10 -51.93 -0.42 0.46 16 LS Contribution 410.09 15.07 6.18 6.18 Total: -1.00 -33.90 410.09 -7.18 -41.08 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: -7.50 Total: 11.71 kcal Atomic # 6 Polarization: 10.52 SS G_CDS: -0.05 Total: 10.48 kcal Atomic # 7 Polarization: -59.83 SS G_CDS: -0.48 Total: -60.31 kcal Atomic # 8 Polarization: -25.65 SS G_CDS: -0.31 Total: -25.96 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -33.90 -7.18 -41.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755336833.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.627 kcal (2) G-P(sol) polarization free energy of solvation -33.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds