Wall clock time and date at job start Sat Apr 11 2020 05:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50694 * 120.00282 * 2 1 4 4 C 1.50702 * 119.99794 * 180.02562 * 2 1 3 5 5 C 1.52998 * 109.47267 * 265.61835 * 4 2 1 6 6 H 1.09001 * 109.46852 * 306.00304 * 5 4 2 7 7 N 1.46497 * 109.47176 * 65.99931 * 5 4 2 8 8 C 1.34773 * 120.00463 * 261.16618 * 7 5 4 9 9 C 1.50701 * 119.99991 * 179.97438 * 8 7 5 10 10 O 1.21280 * 119.99939 * 0.02562 * 8 7 5 11 11 C 1.50694 * 109.47388 * 186.00538 * 5 4 2 12 12 O 1.21283 * 120.00312 * 239.99804 * 11 5 4 13 13 N 1.34783 * 119.99992 * 59.99881 * 11 5 4 14 14 C 1.46503 * 119.99681 * 175.05192 * 13 11 5 15 15 C 1.52994 * 112.94626 * 65.35537 * 14 13 11 16 16 C 1.52998 * 109.47643 * 54.34630 * 15 14 13 17 17 O 1.42894 * 109.47305 * 184.62919 * 16 15 14 18 18 C 1.53949 * 113.73639 * 196.94316 * 14 13 11 19 19 N 1.47817 * 86.03499 * 90.88299 * 18 14 13 20 20 C 1.36936 * 134.45654 * 204.64359 * 19 18 14 21 21 H 1.08002 * 119.99962 * 179.86298 * 20 19 18 22 22 C 1.38814 * 119.99824 * 359.86589 * 20 19 18 23 23 N 1.31612 * 120.00212 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99733 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46953 * 89.99926 * 24 22 20 26 26 H 1.48500 * 109.47175 * 209.99813 * 24 22 20 27 27 H 1.48501 * 109.47453 * 330.00201 * 24 22 20 28 28 C 1.47577 * 91.05282 * 24.54747 * 19 18 14 29 29 H 1.08004 * 120.00363 * 359.97438 * 1 2 3 30 30 H 1.08000 * 120.00614 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47233 * 275.04242 * 3 2 1 32 32 H 1.09004 * 109.47274 * 35.03728 * 3 2 1 33 33 H 1.09001 * 109.47797 * 155.03837 * 3 2 1 34 34 H 1.08998 * 109.47071 * 145.61843 * 4 2 1 35 35 H 1.08998 * 109.47356 * 25.62157 * 4 2 1 36 36 H 0.97009 * 119.99537 * 81.17074 * 7 5 4 37 37 H 1.09000 * 109.47361 * 359.97438 * 9 8 7 38 38 H 1.09002 * 109.46932 * 120.00264 * 9 8 7 39 39 H 1.09001 * 109.47079 * 240.00020 * 9 8 7 40 40 H 0.96999 * 119.99719 * 355.04815 * 13 11 5 41 41 H 1.08999 * 109.47140 * 174.34909 * 15 14 13 42 42 H 1.09008 * 109.47074 * 294.34174 * 15 14 13 43 43 H 1.09008 * 109.46830 * 304.63041 * 16 15 14 44 44 H 1.08998 * 109.47173 * 64.62402 * 16 15 14 45 45 H 0.96704 * 113.99998 * 180.02562 * 17 16 15 46 46 H 1.09002 * 113.77026 * 205.14027 * 18 14 13 47 47 H 1.09000 * 113.77016 * 336.54776 * 18 14 13 48 48 H 0.97005 * 120.00097 * 180.02562 * 23 22 20 49 49 H 1.08999 * 113.77253 * 221.15335 * 28 19 18 50 50 H 1.09000 * 113.87298 * 89.76539 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.0634 -1.3051 -0.0006 5 6 2.4139 -1.6924 1.4375 6 1 2.9435 -0.8690 1.9166 7 7 1.1837 -1.9793 2.1796 8 6 0.6463 -1.0396 2.9824 9 6 -0.6195 -1.3346 3.7452 10 8 1.1807 0.0437 3.0901 11 6 3.2921 -2.9169 1.4282 12 8 2.9266 -3.9297 1.9865 13 7 4.4840 -2.8866 0.7995 14 6 5.3849 -4.0390 0.8818 15 6 4.8198 -5.2876 0.2019 16 6 4.4416 -4.9549 -1.2428 17 8 3.8152 -6.0895 -1.8446 18 6 6.8372 -3.7198 0.4832 19 7 7.0559 -3.4208 1.9142 20 6 7.9436 -2.6410 2.6063 21 1 7.8912 -2.5893 3.6838 22 6 8.9108 -1.9168 1.9229 23 7 8.9744 -1.9793 0.6098 24 14 10.1214 -0.8524 2.8670 25 1 11.3218 -1.6555 3.2124 26 1 10.5242 0.3036 2.0265 27 1 9.4805 -0.3594 4.1125 28 6 5.9325 -4.2978 2.2971 29 1 -0.5401 0.9353 0.0004 30 1 -0.5401 -0.9352 0.0004 31 1 2.1670 1.6649 -1.0237 32 1 1.5165 2.0405 0.5900 33 1 3.0520 1.1539 0.4337 34 1 2.9796 -1.1955 -0.5809 35 1 1.4426 -2.0829 -0.4453 36 1 0.7561 -2.8457 2.0931 37 1 -0.9500 -2.3491 3.5223 38 1 -0.4295 -1.2406 4.8144 39 1 -1.3946 -0.6273 3.4504 40 1 4.7451 -2.1019 0.2926 41 1 5.5719 -6.0765 0.2081 42 1 3.9345 -5.6255 0.7407 43 1 3.7516 -4.1111 -1.2526 44 1 5.3400 -4.6961 -1.8031 45 1 3.5484 -5.9501 -2.7636 46 1 7.3949 -4.5852 0.1250 47 1 6.9333 -2.8509 -0.1680 48 1 9.6505 -1.4735 0.1323 49 1 5.3075 -3.8897 3.0914 50 1 6.2218 -5.3338 2.4735 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755336833.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:56 Heat of formation + Delta-G solvation = -78.978045 kcal Electronic energy + Delta-G solvation = -31551.649130 eV Core-core repulsion = 27387.147694 eV Total energy + Delta-G solvation = -4164.501436 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.83119 -40.66802 -39.21852 -37.66000 -37.43254 -35.26958 -34.96884 -33.84594 -32.32063 -31.49902 -29.46283 -28.86025 -28.12092 -26.84496 -25.82081 -24.90332 -22.86979 -22.03465 -21.42708 -20.26896 -19.53285 -18.87261 -18.58996 -18.22799 -17.64153 -17.05896 -16.93915 -16.37951 -16.32050 -16.17301 -15.77421 -15.56983 -15.34302 -15.29182 -15.04724 -14.80628 -14.40420 -14.36913 -14.26309 -13.79130 -13.54509 -13.27777 -13.24777 -13.10420 -12.95904 -12.85395 -12.81482 -12.61461 -12.58852 -12.40077 -12.22295 -12.03173 -11.83827 -11.67493 -11.34123 -11.05162 -10.92184 -10.87930 -10.70891 -10.29957 -10.03005 -9.73235 -8.93364 -7.92882 -5.24619 1.29332 1.45219 1.45623 1.53366 1.53947 1.70520 1.94000 2.44484 2.48244 3.18105 3.26401 3.36937 3.51877 3.65316 3.91172 3.97394 3.98270 4.15159 4.19573 4.27110 4.34358 4.43299 4.50200 4.54165 4.61758 4.68498 4.70770 4.72992 4.73643 4.82755 4.85838 4.92437 4.95932 5.05122 5.09239 5.15362 5.15982 5.17300 5.26816 5.36886 5.44866 5.70752 5.76386 5.89447 6.00820 6.52598 6.57642 6.91253 6.96008 7.17003 7.29856 7.57315 8.51143 9.23307 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009001 B = 0.004071 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3110.190152 B = 6875.755805 C = 8270.209774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.121 4.121 3 C -0.116 4.116 4 C -0.085 4.085 5 C 0.138 3.862 6 H 0.099 0.901 7 N -0.700 5.700 8 C 0.509 3.491 9 C -0.163 4.163 10 O -0.585 6.585 11 C 0.515 3.485 12 O -0.557 6.557 13 N -0.683 5.683 14 C 0.156 3.844 15 C -0.108 4.108 16 C 0.089 3.911 17 O -0.590 6.590 18 C 0.171 3.829 19 N -0.631 5.631 20 C -0.236 4.236 21 H 0.071 0.929 22 C -0.051 4.051 23 N -0.943 5.943 24 Si 0.970 3.030 25 H -0.288 1.288 26 H -0.289 1.289 27 H -0.277 1.277 28 C 0.119 3.881 29 H 0.097 0.903 30 H 0.105 0.895 31 H 0.078 0.922 32 H 0.055 0.945 33 H 0.051 0.949 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.416 0.584 37 H 0.100 0.900 38 H 0.097 0.903 39 H 0.107 0.893 40 H 0.409 0.591 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.053 0.947 44 H 0.051 0.949 45 H 0.396 0.604 46 H 0.036 0.964 47 H 0.063 0.937 48 H 0.251 0.749 49 H 0.035 0.965 50 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.378 -0.279 -5.693 21.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.121 4.121 3 C -0.173 4.173 4 C -0.124 4.124 5 C 0.028 3.972 6 H 0.116 0.884 7 N -0.354 5.354 8 C 0.298 3.702 9 C -0.222 4.222 10 O -0.465 6.465 11 C 0.301 3.699 12 O -0.435 6.435 13 N -0.334 5.334 14 C 0.067 3.933 15 C -0.147 4.147 16 C 0.012 3.988 17 O -0.399 6.399 18 C 0.045 3.955 19 N -0.358 5.358 20 C -0.364 4.364 21 H 0.089 0.911 22 C -0.245 4.245 23 N -0.592 5.592 24 Si 0.799 3.201 25 H -0.215 1.215 26 H -0.215 1.215 27 H -0.202 1.202 28 C -0.007 4.007 29 H 0.115 0.885 30 H 0.123 0.877 31 H 0.097 0.903 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.253 0.747 37 H 0.119 0.881 38 H 0.115 0.885 39 H 0.125 0.875 40 H 0.245 0.755 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.246 0.754 46 H 0.054 0.946 47 H 0.081 0.919 48 H 0.060 0.940 49 H 0.053 0.947 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -19.884 -0.258 -4.556 20.401 hybrid contribution 1.235 0.760 -0.012 1.450 sum -18.649 0.501 -4.568 19.207 Atomic orbital electron populations 1.23690 0.94959 1.02067 1.01863 1.21529 0.95698 0.94914 0.99967 1.20798 0.99721 0.94720 1.02041 1.21022 1.02096 0.96035 0.93214 1.20613 0.86698 0.94782 0.95071 0.88351 1.45747 1.25246 1.18299 1.46071 1.21507 0.87168 0.83311 0.78224 1.21856 0.93606 1.05607 1.01101 1.90711 1.64498 1.25459 1.65816 1.20845 0.81868 0.89522 0.77702 1.90654 1.73707 1.33787 1.45346 1.45470 1.16521 1.18879 1.52519 1.21814 0.89641 0.85920 0.95891 1.21571 1.01714 0.96104 0.95320 1.21962 0.96370 0.87808 0.92700 1.86421 1.81315 1.39536 1.32591 1.22505 0.87753 0.97918 0.87296 1.46228 1.35789 1.49924 1.03845 1.19241 1.08035 1.18476 0.90646 0.91069 1.25388 1.00634 1.01859 0.96633 1.69904 1.37038 1.45927 1.06320 0.85216 0.79085 0.78149 0.77666 1.21505 1.21533 1.20236 1.22932 0.88046 0.94090 0.95642 0.88493 0.87685 0.90329 0.92597 0.92981 0.88923 0.88981 0.74676 0.88092 0.88481 0.87465 0.75474 0.90908 0.90985 0.92896 0.93028 0.75437 0.94627 0.91898 0.93973 0.94710 0.93260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.41 12.93 67.79 0.88 -2.53 16 2 C -0.12 -2.46 4.27 -16.48 -0.07 -2.53 16 3 C -0.12 -2.49 10.02 71.23 0.71 -1.77 16 4 C -0.09 -1.66 4.97 29.85 0.15 -1.51 16 5 C 0.14 3.46 2.63 44.24 0.12 3.58 16 6 H 0.10 3.03 7.18 -2.39 -0.02 3.01 16 7 N -0.70 -15.31 4.42 -446.12 -1.97 -17.28 16 8 C 0.51 11.83 6.75 87.66 0.59 12.42 16 9 C -0.16 -2.22 10.39 71.24 0.74 -1.48 16 10 O -0.58 -18.72 16.03 -3.03 -0.05 -18.77 16 11 C 0.51 15.32 6.73 87.65 0.59 15.91 16 12 O -0.56 -18.97 14.15 -3.04 -0.04 -19.01 16 13 N -0.68 -21.20 4.31 -427.54 -1.84 -23.05 16 14 C 0.16 5.52 0.62 5.36 0.00 5.52 16 15 C -0.11 -3.34 4.85 30.59 0.15 -3.19 16 16 C 0.09 2.25 6.87 71.98 0.49 2.74 16 17 O -0.59 -14.03 13.66 -148.98 -2.03 -16.07 16 18 C 0.17 7.40 6.76 86.44 0.58 7.99 16 19 N -0.63 -31.58 3.70 -715.46 -2.65 -34.23 16 20 C -0.24 -13.14 10.70 84.03 0.90 -12.24 16 21 H 0.07 3.96 7.83 -2.91 -0.02 3.93 16 22 C -0.05 -2.83 5.50 84.86 0.47 -2.36 16 23 N -0.94 -53.52 11.39 21.65 0.25 -53.27 16 24 Si 0.97 45.26 29.55 68.60 2.03 47.28 16 25 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 26 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 27 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 28 C 0.12 5.07 7.89 86.49 0.68 5.76 16 29 H 0.10 1.69 8.05 -2.91 -0.02 1.66 16 30 H 0.10 1.61 8.00 -2.91 -0.02 1.58 16 31 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 32 H 0.06 1.27 8.10 -2.39 -0.02 1.25 16 33 H 0.05 1.24 8.09 -2.39 -0.02 1.22 16 34 H 0.09 1.67 7.30 -2.39 -0.02 1.65 16 35 H 0.09 1.54 8.00 -2.39 -0.02 1.52 16 36 H 0.42 7.65 8.04 -92.70 -0.75 6.90 16 37 H 0.10 0.86 7.91 -2.39 -0.02 0.84 16 38 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.41 11.89 7.87 -92.71 -0.73 11.16 16 41 H 0.07 2.31 8.07 -2.39 -0.02 2.29 16 42 H 0.07 2.41 6.84 -2.38 -0.02 2.40 16 43 H 0.05 1.20 7.49 -2.38 -0.02 1.19 16 44 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.40 5.28 9.12 -74.05 -0.68 4.61 16 46 H 0.04 1.60 8.05 -2.39 -0.02 1.58 16 47 H 0.06 2.92 7.11 -2.39 -0.02 2.90 16 48 H 0.25 13.88 8.31 -92.70 -0.77 13.11 16 49 H 0.03 1.56 7.65 -2.39 -0.02 1.54 16 50 H 0.05 2.04 8.10 -2.39 -0.02 2.02 16 Total: -1.00 -73.28 410.09 -0.52 -73.80 By element: Atomic # 1 Polarization: 35.48 SS G_CDS: -1.19 Total: 34.29 kcal Atomic # 6 Polarization: 19.31 SS G_CDS: 6.99 Total: 26.29 kcal Atomic # 7 Polarization: -121.61 SS G_CDS: -6.22 Total: -127.82 kcal Atomic # 8 Polarization: -51.71 SS G_CDS: -2.13 Total: -53.84 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.28 kcal Total: -73.28 -0.52 -73.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755336833.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.180 kcal (2) G-P(sol) polarization free energy of solvation -73.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds