Wall clock time and date at job start Sat Apr 11 2020 05:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50699 * 120.00330 * 2 1 4 4 C 1.50703 * 120.00002 * 180.02562 * 2 1 3 5 5 C 1.52995 * 109.47524 * 94.99438 * 4 2 1 6 6 H 1.09006 * 109.47148 * 55.00314 * 5 4 2 7 7 N 1.46493 * 109.47282 * 295.00056 * 5 4 2 8 8 C 1.34775 * 120.00194 * 300.00254 * 7 5 4 9 9 C 1.50703 * 120.00203 * 180.02562 * 8 7 5 10 10 O 1.21283 * 119.99991 * 359.97438 * 8 7 5 11 11 C 1.50701 * 109.47140 * 174.99698 * 5 4 2 12 12 O 1.21288 * 119.99714 * 99.99980 * 11 5 4 13 13 N 1.34780 * 120.00468 * 280.00438 * 11 5 4 14 14 C 1.46496 * 119.99926 * 185.25228 * 13 11 5 15 15 C 1.53002 * 113.28472 * 52.16899 * 14 13 11 16 16 C 1.52994 * 109.47055 * 73.12607 * 15 14 13 17 17 O 1.42909 * 109.47277 * 185.08974 * 16 15 14 18 18 C 1.53497 * 114.20665 * 185.23383 * 14 13 11 19 19 N 1.47062 * 87.98538 * 87.71816 * 18 14 13 20 20 C 1.36936 * 136.05808 * 207.09122 * 19 18 14 21 21 H 1.08006 * 119.99707 * 354.24234 * 20 19 18 22 22 C 1.38809 * 120.00537 * 174.24801 * 20 19 18 23 23 N 1.31618 * 120.00522 * 181.87797 * 22 20 19 24 24 Si 1.86803 * 119.99701 * 1.59540 * 22 20 19 25 25 H 1.48500 * 109.47212 * 55.23162 * 24 22 20 26 26 H 1.48492 * 109.47261 * 175.23555 * 24 22 20 27 27 H 1.48502 * 109.47065 * 295.23639 * 24 22 20 28 28 C 1.47067 * 87.88707 * 27.34231 * 19 18 14 29 29 H 1.07994 * 119.99839 * 359.97438 * 1 2 3 30 30 H 1.08000 * 119.99944 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47230 * 270.00701 * 3 2 1 32 32 H 1.08998 * 109.47072 * 30.00282 * 3 2 1 33 33 H 1.08997 * 109.47240 * 150.00069 * 3 2 1 34 34 H 1.09006 * 109.46784 * 334.99230 * 4 2 1 35 35 H 1.09008 * 109.47133 * 214.99967 * 4 2 1 36 36 H 0.97003 * 120.00050 * 120.00027 * 7 5 4 37 37 H 1.08997 * 109.46875 * 89.99426 * 9 8 7 38 38 H 1.08999 * 109.47074 * 209.99898 * 9 8 7 39 39 H 1.09004 * 109.46572 * 329.99725 * 9 8 7 40 40 H 0.96991 * 119.99644 * 5.25336 * 13 11 5 41 41 H 1.08997 * 109.47208 * 193.13311 * 15 14 13 42 42 H 1.09005 * 109.46826 * 313.13404 * 15 14 13 43 43 H 1.09000 * 109.47912 * 305.08842 * 16 15 14 44 44 H 1.09004 * 109.46862 * 65.09747 * 16 15 14 45 45 H 0.96692 * 114.00145 * 180.02562 * 17 16 15 46 46 H 1.09003 * 113.46496 * 332.93817 * 18 14 13 47 47 H 1.08999 * 113.52330 * 202.51043 * 18 14 13 48 48 H 0.97003 * 119.99855 * 4.74257 * 23 22 20 49 49 H 1.08994 * 113.46266 * 87.43656 * 28 19 18 50 50 H 1.09000 * 113.46958 * 217.87869 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.0635 -1.3051 -0.0006 5 6 2.4273 -1.6834 -1.4377 6 1 2.9770 -0.8641 -1.9011 7 7 1.2030 -1.9425 -2.1993 8 6 0.3604 -2.9192 -1.8089 9 6 -0.8987 -3.1861 -2.5927 10 8 0.6160 -3.5840 -0.8272 11 6 3.2853 -2.9223 -1.4292 12 8 2.7910 -4.0039 -1.6678 13 7 4.6018 -2.8286 -1.1562 14 6 5.4576 -4.0130 -1.2604 15 6 5.3330 -4.7329 -2.6047 16 6 6.0276 -3.9092 -3.6907 17 8 5.8102 -4.5200 -4.9643 18 6 6.9042 -3.7868 -0.7995 19 7 6.4688 -4.1290 0.5629 20 6 6.8764 -3.8240 1.8341 21 1 7.7788 -3.2511 1.9890 22 6 6.1300 -4.2512 2.9237 23 7 6.5015 -3.9268 4.1439 24 14 4.5937 -5.2801 2.6576 25 1 4.9355 -6.4818 1.8550 26 1 4.0466 -5.7019 3.9721 27 1 3.5775 -4.4744 1.9341 28 6 5.4068 -4.9479 -0.0408 29 1 -0.5399 0.9353 0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 2.2452 1.6198 -1.0277 32 1 1.4746 2.0647 0.5139 33 1 3.0160 1.1747 0.5138 34 1 1.4386 -2.0856 0.4335 35 1 2.9743 -1.1991 0.5889 36 1 0.9988 -1.4110 -2.9847 37 1 -0.6941 -3.9235 -3.3689 38 1 -1.6695 -3.5677 -1.9231 39 1 -1.2432 -2.2600 -3.0530 40 1 4.9826 -1.9769 -0.8909 41 1 5.8028 -5.7141 -2.5363 42 1 4.2791 -4.8515 -2.8569 43 1 5.6187 -2.8988 -3.6979 44 1 7.0974 -3.8668 -3.4861 45 1 6.2236 -4.0504 -5.7015 46 1 7.2360 -2.7536 -0.9025 47 1 7.6118 -4.5005 -1.2212 48 1 7.2563 -3.3328 4.2793 49 1 5.7189 -5.9683 -0.2628 50 1 4.4629 -4.9040 0.5026 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755336834.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:00 Heat of formation + Delta-G solvation = -34.968361 kcal Electronic energy + Delta-G solvation = -32169.917606 eV Core-core repulsion = 28007.324573 eV Total energy + Delta-G solvation = -4162.593033 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.68826 -39.55604 -37.68829 -36.71718 -36.44384 -34.04063 -33.55764 -32.25776 -31.18436 -30.55679 -28.46821 -27.39326 -27.14061 -25.61894 -24.61432 -23.18616 -21.61465 -20.89856 -19.83313 -18.99670 -18.43731 -17.57340 -17.38892 -17.31938 -16.92008 -15.92773 -15.70194 -15.17790 -14.96598 -14.82679 -14.46517 -14.26270 -14.14152 -14.01339 -13.86275 -13.44452 -13.40378 -13.21612 -13.06992 -12.85549 -12.60236 -12.33138 -12.04287 -11.87365 -11.80402 -11.71079 -11.51846 -11.46255 -11.08110 -11.03651 -10.82263 -10.46794 -10.18753 -9.99736 -9.72073 -9.49570 -9.30130 -9.15862 -9.09770 -8.94240 -8.66136 -8.46237 -7.15132 -6.29512 -3.24090 2.12248 2.77562 2.96699 3.13895 3.53661 3.58021 3.60130 3.74361 4.17391 4.63411 4.64706 4.73626 4.75227 4.88488 4.92280 4.96662 5.07831 5.10852 5.19524 5.22913 5.37780 5.39100 5.40098 5.42296 5.51934 5.61532 5.67832 5.73550 5.77623 5.84233 5.86314 5.92899 6.07433 6.13641 6.17880 6.18153 6.38301 6.45136 6.45344 6.59823 6.61590 6.83857 7.05677 7.07590 7.54413 7.61860 7.86549 8.22426 8.41960 8.62532 8.97152 9.49783 10.34334 11.21948 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008464 B = 0.005305 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3307.228512 B = 5276.632114 C = 6824.859414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.116 4.116 3 C -0.121 4.121 4 C -0.104 4.104 5 C 0.145 3.855 6 H 0.104 0.896 7 N -0.719 5.719 8 C 0.513 3.487 9 C -0.169 4.169 10 O -0.508 6.508 11 C 0.503 3.497 12 O -0.504 6.504 13 N -0.695 5.695 14 C 0.138 3.862 15 C -0.119 4.119 16 C 0.083 3.917 17 O -0.575 6.575 18 C 0.125 3.875 19 N -0.623 5.623 20 C -0.304 4.304 21 H 0.082 0.918 22 C -0.017 4.017 23 N -0.933 5.933 24 Si 1.068 2.932 25 H -0.292 1.292 26 H -0.297 1.297 27 H -0.287 1.287 28 C 0.093 3.907 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.100 0.900 35 H 0.086 0.914 36 H 0.400 0.600 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.074 0.926 40 H 0.401 0.599 41 H 0.077 0.923 42 H 0.094 0.906 43 H 0.040 0.960 44 H 0.045 0.955 45 H 0.373 0.627 46 H 0.048 0.952 47 H 0.051 0.949 48 H 0.260 0.740 49 H 0.049 0.951 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.844 11.051 -19.402 24.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.116 4.116 3 C -0.177 4.177 4 C -0.143 4.143 5 C 0.036 3.964 6 H 0.122 0.878 7 N -0.373 5.373 8 C 0.299 3.701 9 C -0.229 4.229 10 O -0.381 6.381 11 C 0.286 3.714 12 O -0.377 6.377 13 N -0.347 5.347 14 C 0.050 3.950 15 C -0.158 4.158 16 C 0.005 3.995 17 O -0.380 6.380 18 C -0.003 4.003 19 N -0.351 5.351 20 C -0.430 4.430 21 H 0.100 0.900 22 C -0.216 4.216 23 N -0.575 5.575 24 Si 0.901 3.099 25 H -0.219 1.219 26 H -0.225 1.225 27 H -0.215 1.215 28 C -0.033 4.033 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.118 0.882 35 H 0.104 0.896 36 H 0.234 0.766 37 H 0.109 0.891 38 H 0.108 0.892 39 H 0.093 0.907 40 H 0.235 0.765 41 H 0.096 0.904 42 H 0.112 0.888 43 H 0.059 0.941 44 H 0.064 0.936 45 H 0.219 0.781 46 H 0.067 0.933 47 H 0.069 0.931 48 H 0.070 0.930 49 H 0.067 0.933 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.477 8.564 -17.411 22.543 hybrid contribution 1.854 1.873 -1.321 2.948 sum -9.624 10.436 -18.732 23.503 Atomic orbital electron populations 1.23647 0.95274 1.01410 1.02428 1.21627 0.95373 0.95070 0.99573 1.20893 1.00557 0.94461 1.01828 1.21091 1.02445 0.96000 0.94744 1.20692 0.86087 0.95384 0.94228 0.87803 1.45638 1.22115 1.37942 1.31624 1.20591 0.84784 0.79127 0.85572 1.21852 0.95922 1.03376 1.01774 1.90778 1.74547 1.46053 1.26721 1.20709 0.82074 0.91119 0.77481 1.90703 1.71896 1.28336 1.46812 1.45377 1.07494 1.11930 1.69871 1.21669 0.92408 0.87487 0.93458 1.21667 1.03775 0.98751 0.91610 1.22151 0.98645 0.95539 0.83150 1.86509 1.78938 1.55658 1.16895 1.22618 0.92111 0.99001 0.86525 1.46046 1.34964 1.53718 1.00414 1.20088 1.08901 1.34303 0.79734 0.90030 1.25609 1.02667 1.01782 0.91543 1.70946 1.29740 1.36971 1.19870 0.83723 0.75945 0.76417 0.73797 1.21877 1.22474 1.21498 1.23214 0.94385 0.94272 0.91429 0.88732 0.88788 0.91658 0.91937 0.91452 0.88208 0.89574 0.76559 0.89109 0.89219 0.90697 0.76480 0.90417 0.88798 0.94130 0.93637 0.78088 0.93337 0.93115 0.92992 0.93331 0.91989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.00 13.68 29.01 0.40 -1.61 16 2 C -0.12 -1.28 5.08 -101.07 -0.51 -1.79 16 3 C -0.12 -1.05 10.03 36.01 0.36 -0.69 16 4 C -0.10 -1.46 4.71 -27.88 -0.13 -1.59 16 5 C 0.15 1.79 3.00 -69.09 -0.21 1.58 16 6 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 7 N -0.72 -7.71 4.74 -54.94 -0.26 -7.97 16 8 C 0.51 6.91 6.39 -10.98 -0.07 6.84 16 9 C -0.17 -1.51 10.30 36.01 0.37 -1.14 16 10 O -0.51 -9.76 12.96 -17.94 -0.23 -9.99 16 11 C 0.50 8.35 6.52 -10.98 -0.07 8.27 16 12 O -0.50 -10.29 11.65 -17.94 -0.21 -10.50 16 13 N -0.69 -11.21 5.31 -47.30 -0.25 -11.46 16 14 C 0.14 2.48 0.74 -131.57 -0.10 2.38 16 15 C -0.12 -1.93 5.04 -26.73 -0.13 -2.06 16 16 C 0.08 1.05 6.76 37.15 0.25 1.31 16 17 O -0.58 -7.22 13.66 -35.23 -0.48 -7.70 16 18 C 0.12 2.32 7.15 -8.51 -0.06 2.26 16 19 N -0.62 -15.18 3.69 -184.57 -0.68 -15.87 16 20 C -0.30 -8.71 11.09 -15.06 -0.17 -8.88 16 21 H 0.08 2.43 8.05 -52.48 -0.42 2.00 16 22 C -0.02 -0.51 5.50 -17.43 -0.10 -0.61 16 23 N -0.93 -29.83 13.70 55.49 0.76 -29.07 16 24 Si 1.07 29.29 25.05 -169.99 -4.26 25.03 16 25 H -0.29 -7.69 6.61 56.52 0.37 -7.32 16 26 H -0.30 -8.26 7.11 56.52 0.40 -7.85 16 27 H -0.29 -7.87 6.47 56.52 0.37 -7.51 16 28 C 0.09 2.14 5.36 -8.37 -0.04 2.10 16 29 H 0.09 0.82 8.04 -52.49 -0.42 0.40 16 30 H 0.09 1.11 7.69 -52.49 -0.40 0.70 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.51 8.06 -51.93 -0.42 0.09 16 33 H 0.07 0.62 8.08 -51.93 -0.42 0.20 16 34 H 0.10 1.78 5.89 -51.93 -0.31 1.47 16 35 H 0.09 1.28 8.10 -51.92 -0.42 0.86 16 36 H 0.40 2.77 8.83 -40.82 -0.36 2.41 16 37 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.40 5.62 8.67 -40.82 -0.35 5.27 16 41 H 0.08 1.27 7.89 -51.93 -0.41 0.86 16 42 H 0.09 1.73 5.87 -51.93 -0.30 1.43 16 43 H 0.04 0.47 8.10 -51.93 -0.42 0.05 16 44 H 0.05 0.53 7.67 -51.93 -0.40 0.13 16 45 H 0.37 2.73 9.12 45.56 0.42 3.14 16 46 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 47 H 0.05 0.90 8.10 -51.93 -0.42 0.48 16 48 H 0.26 8.13 8.73 -40.82 -0.36 7.77 16 49 H 0.05 1.11 7.89 -51.93 -0.41 0.70 16 50 H 0.06 1.60 3.94 -51.93 -0.20 1.40 16 LS Contribution 399.85 15.07 6.03 6.03 Total: -1.00 -39.56 399.85 -7.23 -46.79 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -7.43 Total: 8.33 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: -0.21 Total: 6.38 kcal Atomic # 7 Polarization: -63.94 SS G_CDS: -0.43 Total: -64.38 kcal Atomic # 8 Polarization: -27.26 SS G_CDS: -0.92 Total: -28.18 kcal Atomic # 14 Polarization: 29.29 SS G_CDS: -4.26 Total: 25.03 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -39.56 -7.23 -46.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755336834.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.824 kcal (2) G-P(sol) polarization free energy of solvation -39.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds