Wall clock time and date at job start Sat Apr 11 2020 05:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50699 * 120.00330 * 2 1 4 4 C 1.50703 * 120.00002 * 180.02562 * 2 1 3 5 5 C 1.52995 * 109.47524 * 94.99438 * 4 2 1 6 6 H 1.09006 * 109.47148 * 55.00314 * 5 4 2 7 7 N 1.46493 * 109.47282 * 295.00056 * 5 4 2 8 8 C 1.34775 * 120.00194 * 300.00254 * 7 5 4 9 9 C 1.50703 * 120.00203 * 180.02562 * 8 7 5 10 10 O 1.21283 * 119.99991 * 359.97438 * 8 7 5 11 11 C 1.50701 * 109.47140 * 174.99698 * 5 4 2 12 12 O 1.21288 * 119.99714 * 99.99980 * 11 5 4 13 13 N 1.34780 * 120.00468 * 280.00438 * 11 5 4 14 14 C 1.46496 * 119.99926 * 185.25228 * 13 11 5 15 15 C 1.53002 * 113.28472 * 52.16899 * 14 13 11 16 16 C 1.52994 * 109.47055 * 73.12607 * 15 14 13 17 17 O 1.42909 * 109.47277 * 185.08974 * 16 15 14 18 18 C 1.53497 * 114.20665 * 185.23383 * 14 13 11 19 19 N 1.47062 * 87.98538 * 87.71816 * 18 14 13 20 20 C 1.36936 * 136.05808 * 207.09122 * 19 18 14 21 21 H 1.08006 * 119.99707 * 354.24234 * 20 19 18 22 22 C 1.38809 * 120.00537 * 174.24801 * 20 19 18 23 23 N 1.31618 * 120.00522 * 181.87797 * 22 20 19 24 24 Si 1.86803 * 119.99701 * 1.59540 * 22 20 19 25 25 H 1.48500 * 109.47212 * 55.23162 * 24 22 20 26 26 H 1.48492 * 109.47261 * 175.23555 * 24 22 20 27 27 H 1.48502 * 109.47065 * 295.23639 * 24 22 20 28 28 C 1.47067 * 87.88707 * 27.34231 * 19 18 14 29 29 H 1.07994 * 119.99839 * 359.97438 * 1 2 3 30 30 H 1.08000 * 119.99944 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47230 * 270.00701 * 3 2 1 32 32 H 1.08998 * 109.47072 * 30.00282 * 3 2 1 33 33 H 1.08997 * 109.47240 * 150.00069 * 3 2 1 34 34 H 1.09006 * 109.46784 * 334.99230 * 4 2 1 35 35 H 1.09008 * 109.47133 * 214.99967 * 4 2 1 36 36 H 0.97003 * 120.00050 * 120.00027 * 7 5 4 37 37 H 1.08997 * 109.46875 * 89.99426 * 9 8 7 38 38 H 1.08999 * 109.47074 * 209.99898 * 9 8 7 39 39 H 1.09004 * 109.46572 * 329.99725 * 9 8 7 40 40 H 0.96991 * 119.99644 * 5.25336 * 13 11 5 41 41 H 1.08997 * 109.47208 * 193.13311 * 15 14 13 42 42 H 1.09005 * 109.46826 * 313.13404 * 15 14 13 43 43 H 1.09000 * 109.47912 * 305.08842 * 16 15 14 44 44 H 1.09004 * 109.46862 * 65.09747 * 16 15 14 45 45 H 0.96692 * 114.00145 * 180.02562 * 17 16 15 46 46 H 1.09003 * 113.46496 * 332.93817 * 18 14 13 47 47 H 1.08999 * 113.52330 * 202.51043 * 18 14 13 48 48 H 0.97003 * 119.99855 * 4.74257 * 23 22 20 49 49 H 1.08994 * 113.46266 * 87.43656 * 28 19 18 50 50 H 1.09000 * 113.46958 * 217.87869 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.0635 -1.3051 -0.0006 5 6 2.4273 -1.6834 -1.4377 6 1 2.9770 -0.8641 -1.9011 7 7 1.2030 -1.9425 -2.1993 8 6 0.3604 -2.9192 -1.8089 9 6 -0.8987 -3.1861 -2.5927 10 8 0.6160 -3.5840 -0.8272 11 6 3.2853 -2.9223 -1.4292 12 8 2.7910 -4.0039 -1.6678 13 7 4.6018 -2.8286 -1.1562 14 6 5.4576 -4.0130 -1.2604 15 6 5.3330 -4.7329 -2.6047 16 6 6.0276 -3.9092 -3.6907 17 8 5.8102 -4.5200 -4.9643 18 6 6.9042 -3.7868 -0.7995 19 7 6.4688 -4.1290 0.5629 20 6 6.8764 -3.8240 1.8341 21 1 7.7788 -3.2511 1.9890 22 6 6.1300 -4.2512 2.9237 23 7 6.5015 -3.9268 4.1439 24 14 4.5937 -5.2801 2.6576 25 1 4.9355 -6.4818 1.8550 26 1 4.0466 -5.7019 3.9721 27 1 3.5775 -4.4744 1.9341 28 6 5.4068 -4.9479 -0.0408 29 1 -0.5399 0.9353 0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 2.2452 1.6198 -1.0277 32 1 1.4746 2.0647 0.5139 33 1 3.0160 1.1747 0.5138 34 1 1.4386 -2.0856 0.4335 35 1 2.9743 -1.1991 0.5889 36 1 0.9988 -1.4110 -2.9847 37 1 -0.6941 -3.9235 -3.3689 38 1 -1.6695 -3.5677 -1.9231 39 1 -1.2432 -2.2600 -3.0530 40 1 4.9826 -1.9769 -0.8909 41 1 5.8028 -5.7141 -2.5363 42 1 4.2791 -4.8515 -2.8569 43 1 5.6187 -2.8988 -3.6979 44 1 7.0974 -3.8668 -3.4861 45 1 6.2236 -4.0504 -5.7015 46 1 7.2360 -2.7536 -0.9025 47 1 7.6118 -4.5005 -1.2212 48 1 7.2563 -3.3328 4.2793 49 1 5.7189 -5.9683 -0.2628 50 1 4.4629 -4.9040 0.5026 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755336834.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:00 Heat of formation + Delta-G solvation = -68.996626 kcal Electronic energy + Delta-G solvation = -32171.393182 eV Core-core repulsion = 28007.324573 eV Total energy + Delta-G solvation = -4164.068609 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.99059 -40.88070 -39.07001 -37.73512 -37.45044 -35.32256 -35.02859 -34.12018 -32.55596 -31.58735 -29.38895 -28.99446 -28.08696 -27.30981 -25.82101 -24.55178 -22.98752 -22.42351 -21.10498 -20.41492 -19.63539 -19.34002 -18.46848 -18.38971 -18.14097 -17.49110 -16.85012 -16.36854 -16.17003 -16.07766 -15.86404 -15.61342 -15.55071 -15.20736 -15.18737 -14.99451 -14.84173 -14.38318 -14.30417 -13.92188 -13.57497 -13.32481 -13.25116 -13.17806 -12.99522 -12.93819 -12.89407 -12.62796 -12.57530 -12.50109 -12.24825 -12.00801 -11.81395 -11.36211 -11.23778 -11.17155 -10.98754 -10.75680 -10.58935 -10.08832 -10.00794 -9.77698 -9.24132 -8.65093 -5.50911 1.24068 1.28452 1.35040 1.49959 1.66604 1.77775 2.10780 2.36698 2.47426 2.85595 3.08872 3.17099 3.54251 3.62967 3.80226 3.99486 4.03890 4.08645 4.14344 4.20234 4.25451 4.35676 4.37576 4.50796 4.52557 4.55260 4.55697 4.65739 4.68399 4.68613 4.80023 4.86245 4.90635 5.01503 5.03549 5.04924 5.07905 5.11746 5.20649 5.25589 5.47635 5.65024 5.72073 5.91054 6.00901 6.60181 6.66574 6.69582 6.96087 7.26756 7.30873 7.53020 8.20743 8.89358 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008464 B = 0.005305 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3307.228512 B = 5276.632114 C = 6824.859414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.119 4.119 3 C -0.116 4.116 4 C -0.100 4.100 5 C 0.152 3.848 6 H 0.153 0.847 7 N -0.702 5.702 8 C 0.503 3.497 9 C -0.161 4.161 10 O -0.575 6.575 11 C 0.495 3.505 12 O -0.544 6.544 13 N -0.691 5.691 14 C 0.162 3.838 15 C -0.113 4.113 16 C 0.092 3.908 17 O -0.594 6.594 18 C 0.132 3.868 19 N -0.649 5.649 20 C -0.272 4.272 21 H 0.070 0.930 22 C -0.068 4.068 23 N -0.972 5.972 24 Si 1.105 2.895 25 H -0.282 1.282 26 H -0.307 1.307 27 H -0.300 1.300 28 C 0.076 3.924 29 H 0.120 0.880 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.071 0.929 33 H 0.059 0.941 34 H 0.053 0.947 35 H 0.069 0.931 36 H 0.423 0.577 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.115 0.885 40 H 0.412 0.588 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.057 0.943 44 H 0.064 0.936 45 H 0.398 0.602 46 H 0.077 0.923 47 H 0.073 0.927 48 H 0.253 0.747 49 H 0.049 0.951 50 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.774 13.678 -23.232 28.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.120 4.120 3 C -0.172 4.172 4 C -0.139 4.139 5 C 0.043 3.957 6 H 0.170 0.830 7 N -0.357 5.357 8 C 0.292 3.708 9 C -0.221 4.221 10 O -0.453 6.453 11 C 0.280 3.720 12 O -0.420 6.420 13 N -0.344 5.344 14 C 0.073 3.927 15 C -0.152 4.152 16 C 0.015 3.985 17 O -0.402 6.402 18 C 0.007 3.993 19 N -0.377 5.377 20 C -0.400 4.400 21 H 0.088 0.912 22 C -0.262 4.262 23 N -0.618 5.618 24 Si 0.938 3.062 25 H -0.209 1.209 26 H -0.235 1.235 27 H -0.229 1.229 28 C -0.050 4.050 29 H 0.138 0.862 30 H 0.092 0.908 31 H 0.110 0.890 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.262 0.738 37 H 0.116 0.884 38 H 0.102 0.898 39 H 0.133 0.867 40 H 0.249 0.751 41 H 0.090 0.910 42 H 0.088 0.912 43 H 0.075 0.925 44 H 0.082 0.918 45 H 0.248 0.752 46 H 0.095 0.905 47 H 0.091 0.909 48 H 0.063 0.937 49 H 0.067 0.933 50 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -11.393 11.250 -21.361 26.695 hybrid contribution 1.838 1.032 -0.232 2.121 sum -9.555 12.282 -21.593 26.615 Atomic orbital electron populations 1.23702 0.95142 1.01645 1.01746 1.21607 0.95467 0.94608 1.00276 1.20899 0.99849 0.92955 1.03546 1.20946 1.01159 0.96493 0.95334 1.20715 0.86367 0.94560 0.94073 0.82957 1.45511 1.20938 1.37351 1.31852 1.21454 0.85976 0.78505 0.84866 1.21851 0.93415 1.05581 1.01216 1.90764 1.76192 1.48546 1.29748 1.21533 0.82214 0.92028 0.76218 1.90696 1.72547 1.30296 1.48461 1.45399 1.07547 1.11818 1.69658 1.21333 0.92175 0.86799 0.92407 1.21537 1.02810 0.99036 0.91815 1.21985 0.99153 0.95105 0.82305 1.86442 1.79621 1.56602 1.17569 1.22824 0.92740 1.01063 0.82648 1.46113 1.35941 1.54483 1.01161 1.20032 1.07053 1.31285 0.81619 0.91214 1.26192 1.04461 1.03617 0.91886 1.70975 1.30747 1.39092 1.21000 0.83156 0.74205 0.76001 0.72851 1.20867 1.23519 1.22877 1.23417 0.92369 0.95553 0.93708 0.86188 0.90779 0.89041 0.91014 0.92181 0.92835 0.91230 0.73845 0.88421 0.89758 0.86669 0.75091 0.91018 0.91180 0.92509 0.91751 0.75235 0.90450 0.90897 0.93700 0.93324 0.95291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.60 13.68 67.78 0.93 -2.67 16 2 C -0.12 -2.43 5.08 -16.49 -0.08 -2.51 16 3 C -0.12 -1.66 10.03 71.24 0.71 -0.94 16 4 C -0.10 -2.82 4.71 29.85 0.14 -2.68 16 5 C 0.15 3.51 3.00 44.25 0.13 3.64 16 6 H 0.15 2.01 8.14 -2.38 -0.02 1.99 16 7 N -0.70 -13.72 4.74 -446.11 -2.11 -15.83 16 8 C 0.50 13.46 6.39 87.66 0.56 14.02 16 9 C -0.16 -2.62 10.30 71.24 0.73 -1.89 16 10 O -0.57 -23.27 12.96 19.42 0.25 -23.02 16 11 C 0.49 16.16 6.52 87.66 0.57 16.73 16 12 O -0.54 -22.65 11.65 19.41 0.23 -22.42 16 13 N -0.69 -21.33 5.31 -421.95 -2.24 -23.57 16 14 C 0.16 5.57 0.74 4.17 0.00 5.58 16 15 C -0.11 -3.46 5.04 30.59 0.15 -3.30 16 16 C 0.09 2.00 6.76 71.98 0.49 2.49 16 17 O -0.59 -12.85 13.66 -148.98 -2.04 -14.88 16 18 C 0.13 4.55 7.15 83.18 0.60 5.14 16 19 N -0.65 -31.14 3.69 -737.86 -2.72 -33.86 16 20 C -0.27 -15.64 11.09 84.03 0.93 -14.71 16 21 H 0.07 4.15 8.05 -2.91 -0.02 4.13 16 22 C -0.07 -4.20 5.50 84.86 0.47 -3.74 16 23 N -0.97 -63.98 13.70 21.65 0.30 -63.68 16 24 Si 1.10 62.51 25.05 68.60 1.72 64.23 16 25 H -0.28 -15.20 6.61 99.48 0.66 -14.54 16 26 H -0.31 -17.60 7.11 99.48 0.71 -16.89 16 27 H -0.30 -17.35 6.47 99.48 0.64 -16.71 16 28 C 0.08 3.50 5.36 83.27 0.45 3.94 16 29 H 0.12 1.72 8.04 -2.91 -0.02 1.70 16 30 H 0.07 1.75 7.69 -2.91 -0.02 1.72 16 31 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.07 0.92 8.06 -2.39 -0.02 0.90 16 33 H 0.06 0.96 8.08 -2.39 -0.02 0.94 16 34 H 0.05 2.03 5.89 -2.38 -0.01 2.02 16 35 H 0.07 2.12 8.10 -2.38 -0.02 2.10 16 36 H 0.42 4.31 8.83 -92.71 -0.82 3.49 16 37 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.11 0.90 8.14 -2.38 -0.02 0.88 16 40 H 0.41 10.61 8.67 -92.72 -0.80 9.81 16 41 H 0.07 2.26 7.89 -2.39 -0.02 2.24 16 42 H 0.07 2.55 5.87 -2.38 -0.01 2.53 16 43 H 0.06 1.06 8.10 -2.39 -0.02 1.05 16 44 H 0.06 1.18 7.67 -2.39 -0.02 1.16 16 45 H 0.40 4.20 9.12 -74.06 -0.68 3.53 16 46 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 47 H 0.07 2.29 8.10 -2.39 -0.02 2.27 16 48 H 0.25 16.35 8.73 -92.71 -0.81 15.54 16 49 H 0.05 2.24 7.89 -2.39 -0.02 2.22 16 50 H 0.03 1.55 3.94 -2.39 -0.01 1.54 16 Total: -1.00 -93.01 399.85 -1.31 -94.32 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: -1.47 Total: 19.63 kcal Atomic # 6 Polarization: 12.32 SS G_CDS: 6.78 Total: 19.10 kcal Atomic # 7 Polarization: -130.18 SS G_CDS: -6.77 Total: -136.95 kcal Atomic # 8 Polarization: -58.77 SS G_CDS: -1.56 Total: -60.33 kcal Atomic # 14 Polarization: 62.51 SS G_CDS: 1.72 Total: 64.23 kcal Total: -93.01 -1.31 -94.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755336834.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.324 kcal (2) G-P(sol) polarization free energy of solvation -93.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds