Wall clock time and date at job start Sat Apr 11 2020 05:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36941 * 120.00344 * 2 1 4 4 H 1.07993 * 120.00462 * 204.56001 * 3 2 1 5 5 C 1.38817 * 119.99387 * 24.57089 * 3 2 1 6 6 N 1.31614 * 120.00444 * 7.26935 * 5 3 2 7 7 Si 1.86798 * 119.99544 * 187.27077 * 5 3 2 8 8 H 1.48493 * 109.47279 * 89.99968 * 7 5 3 9 9 H 1.48504 * 109.47015 * 209.99925 * 7 5 3 10 10 H 1.48495 * 109.47269 * 329.99723 * 7 5 3 11 11 C 1.46502 * 119.99893 * 180.02562 * 2 1 3 12 12 C 1.53001 * 109.47193 * 269.99679 * 11 2 1 13 13 H 1.09000 * 109.46983 * 59.99822 * 12 11 2 14 14 O 1.42901 * 109.47082 * 299.99977 * 12 11 2 15 15 C 1.52995 * 109.47322 * 180.02562 * 12 11 2 16 16 N 1.46499 * 109.47235 * 185.00491 * 15 12 11 17 17 C 1.46502 * 119.99461 * 269.99664 * 16 15 12 18 18 C 1.34772 * 120.00578 * 89.99697 * 16 15 12 19 19 O 1.21499 * 119.99693 * 3.70986 * 18 16 15 20 20 C 1.48329 * 120.00295 * 183.71809 * 18 16 15 21 21 C 1.42271 * 126.94223 * 172.92998 * 20 18 16 22 22 C 1.35316 * 103.92565 * 180.14615 * 21 20 18 23 23 C 1.50697 * 126.66550 * 179.91215 * 22 21 20 24 24 C 1.52997 * 109.47317 * 59.71097 * 23 22 21 25 25 C 1.53003 * 109.47085 * 299.70683 * 23 22 21 26 26 C 1.53005 * 109.46673 * 179.71154 * 23 22 21 27 27 O 1.34016 * 106.66385 * 359.64769 * 22 21 20 28 28 N 1.20905 * 111.84718 * 0.24124 * 27 22 21 29 29 H 1.09000 * 109.46713 * 275.04176 * 1 2 3 30 30 H 1.09006 * 109.46777 * 35.03723 * 1 2 3 31 31 H 1.08995 * 109.47252 * 155.03971 * 1 2 3 32 32 H 0.96996 * 119.99981 * 180.02562 * 6 5 3 33 33 H 1.09000 * 109.47302 * 149.99695 * 11 2 1 34 34 H 1.08994 * 109.47207 * 29.99877 * 11 2 1 35 35 H 0.96694 * 113.99916 * 300.00182 * 14 12 11 36 36 H 1.09001 * 109.47613 * 64.99859 * 15 12 11 37 37 H 1.09010 * 109.47010 * 304.99944 * 15 12 11 38 38 H 1.09003 * 109.47372 * 263.97278 * 17 16 15 39 39 H 1.09000 * 109.47271 * 23.97604 * 17 16 15 40 40 H 1.09000 * 109.46853 * 143.97468 * 17 16 15 41 41 H 1.08001 * 128.03468 * 0.07791 * 21 20 18 42 42 H 1.09004 * 109.46943 * 59.99700 * 24 23 22 43 43 H 1.08995 * 109.47135 * 300.00165 * 24 23 22 44 44 H 1.08998 * 109.46836 * 179.97438 * 24 23 22 45 45 H 1.08993 * 109.46734 * 180.02562 * 25 23 22 46 46 H 1.08996 * 109.47255 * 300.00501 * 25 23 22 47 47 H 1.09003 * 109.46390 * 60.00351 * 25 23 22 48 48 H 1.08993 * 109.47106 * 299.99501 * 26 23 22 49 49 H 1.08998 * 109.46914 * 60.00150 * 26 23 22 50 50 H 1.09007 * 109.46850 * 179.97438 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1564 1.2282 -0.3887 5 6 1.5499 2.3336 0.4999 6 7 0.3827 2.2569 1.1031 7 14 2.3995 3.9871 0.3164 8 1 1.9780 4.6214 -0.9583 9 1 2.0246 4.8651 1.4539 10 1 3.8712 3.7892 0.3081 11 6 2.1975 -1.2688 -0.0006 12 6 2.4526 -1.7111 1.4417 13 1 1.5002 -1.8416 1.9556 14 8 3.2249 -0.7154 2.1158 15 6 3.2181 -3.0357 1.4412 16 7 3.3580 -3.5195 2.8169 17 6 4.5223 -3.1290 3.6157 18 6 2.4157 -4.3237 3.3476 19 8 1.4850 -4.7021 2.6644 20 6 2.5146 -4.7466 4.7659 21 6 1.5430 -5.4699 5.5123 22 6 2.1033 -5.5990 6.7372 23 6 1.5005 -6.2878 7.9344 24 6 1.2291 -7.7549 7.5956 25 6 0.1867 -5.5997 8.3107 26 6 2.4737 -6.2078 9.1123 27 8 3.3008 -5.0004 6.6771 28 7 3.5160 -4.5335 5.5828 29 1 -0.3633 0.0903 1.0237 30 1 -0.3633 0.8415 -0.5900 31 1 -0.3633 -0.9316 -0.4336 32 1 -0.0366 3.0589 1.4521 33 1 3.1499 -1.1383 -0.5144 34 1 1.6084 -2.0281 -0.5147 35 1 4.0873 -0.5468 1.7123 36 1 4.2063 -2.8842 1.0070 37 1 2.6710 -3.7713 0.8513 38 1 5.2813 -3.9092 3.5572 39 1 4.9308 -2.1950 3.2301 40 1 4.2210 -2.9925 4.6543 41 1 0.5813 -5.8309 5.1789 42 1 2.1651 -8.2450 7.3275 43 1 0.5359 -7.8118 6.7565 44 1 0.7935 -8.2531 8.4617 45 1 -0.2490 -6.0977 9.1769 46 1 0.3801 -4.5545 8.5520 47 1 -0.5065 -5.6567 7.4715 48 1 3.4096 -6.6980 8.8442 49 1 2.6670 -5.1626 9.3536 50 1 2.0375 -6.7057 9.9784 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755802340.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:20 Heat of formation + Delta-G solvation = -15.731939 kcal Electronic energy + Delta-G solvation = -30475.211023 eV Core-core repulsion = 26313.452144 eV Total energy + Delta-G solvation = -4161.758879 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -46.22324 -41.11527 -38.91203 -38.30258 -36.95146 -36.10626 -35.02820 -33.31151 -32.10406 -31.16394 -28.39687 -28.18509 -28.17826 -27.86621 -27.47152 -25.18971 -24.25473 -23.62209 -22.22573 -21.96002 -19.88668 -18.93603 -18.81946 -18.44720 -17.84470 -17.65423 -17.06169 -16.68912 -16.36498 -16.19691 -15.72867 -15.38933 -15.15031 -15.11816 -14.98175 -14.84812 -14.65714 -14.42088 -14.09625 -13.81032 -13.60773 -13.22297 -13.14219 -13.07230 -12.82661 -12.71266 -12.58187 -12.57293 -12.50485 -12.22458 -12.11513 -12.06633 -12.02626 -11.94631 -11.81520 -11.79884 -11.59734 -11.52992 -11.14016 -10.59721 -10.47970 -9.75904 -8.69828 -7.76447 -5.25385 -0.02819 0.58878 1.46797 1.48176 1.56586 1.59858 1.90506 1.96233 2.54031 2.73681 3.25088 3.39115 3.53414 3.72695 3.79454 3.84194 3.92011 3.94743 4.01880 4.13693 4.19413 4.25387 4.37107 4.46839 4.53016 4.56826 4.69705 4.77029 4.77463 4.79463 4.80973 4.88248 4.88500 4.96526 5.00118 5.00519 5.09425 5.19251 5.28431 5.29565 5.35771 5.38062 5.42443 5.65058 5.70955 6.06108 6.36985 6.72541 6.97719 7.05901 7.19876 7.89194 8.35451 9.28624 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017198 B = 0.002431 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.690576 B =11515.896689 C =11753.479176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.610 5.610 3 C -0.237 4.237 4 H 0.079 0.921 5 C -0.061 4.061 6 N -0.947 5.947 7 Si 0.970 3.030 8 H -0.288 1.288 9 H -0.304 1.304 10 H -0.263 1.263 11 C 0.121 3.879 12 C 0.088 3.912 13 H 0.041 0.959 14 O -0.557 6.557 15 C 0.091 3.909 16 N -0.588 5.588 17 C 0.078 3.922 18 C 0.583 3.417 19 O -0.561 6.561 20 C -0.042 4.042 21 C -0.193 4.193 22 C -0.004 4.004 23 C 0.017 3.983 24 C -0.140 4.140 25 C -0.144 4.144 26 C -0.147 4.147 27 O 0.124 5.876 28 N -0.335 5.335 29 H -0.007 1.007 30 H 0.020 0.980 31 H 0.025 0.975 32 H 0.242 0.758 33 H 0.073 0.927 34 H 0.061 0.939 35 H 0.375 0.625 36 H 0.119 0.881 37 H 0.090 0.910 38 H 0.073 0.927 39 H 0.090 0.910 40 H 0.075 0.925 41 H 0.184 0.816 42 H 0.060 0.940 43 H 0.059 0.941 44 H 0.094 0.906 45 H 0.096 0.904 46 H 0.053 0.947 47 H 0.058 0.942 48 H 0.063 0.937 49 H 0.058 0.942 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.360 -22.230 15.025 27.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.333 5.333 3 C -0.367 4.367 4 H 0.096 0.904 5 C -0.254 4.254 6 N -0.595 5.595 7 Si 0.799 3.201 8 H -0.216 1.216 9 H -0.231 1.231 10 H -0.187 1.187 11 C -0.006 4.006 12 C 0.024 3.976 13 H 0.059 0.941 14 O -0.362 6.362 15 C -0.032 4.032 16 N -0.319 5.319 17 C -0.064 4.064 18 C 0.369 3.631 19 O -0.439 6.439 20 C -0.199 4.199 21 C -0.216 4.216 22 C -0.067 4.067 23 C 0.016 3.984 24 C -0.198 4.198 25 C -0.201 4.201 26 C -0.204 4.204 27 O 0.050 5.950 28 N -0.037 5.037 29 H 0.012 0.988 30 H 0.039 0.961 31 H 0.043 0.957 32 H 0.051 0.949 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.222 0.778 36 H 0.137 0.863 37 H 0.108 0.892 38 H 0.091 0.909 39 H 0.109 0.891 40 H 0.093 0.907 41 H 0.202 0.798 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.113 0.887 45 H 0.114 0.886 46 H 0.072 0.928 47 H 0.078 0.922 48 H 0.083 0.917 49 H 0.077 0.923 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 7.471 -21.634 14.865 27.292 hybrid contribution -0.411 1.072 -0.598 1.295 sum 7.060 -20.562 14.266 26.003 Atomic orbital electron populations 1.20521 0.83411 0.95666 0.97088 1.44081 1.01759 1.01874 1.85542 1.19448 0.99095 0.86279 1.31897 0.90359 1.25882 0.98385 1.02210 0.98942 1.70261 1.18649 1.27348 1.43202 0.85218 0.78784 0.79935 0.76182 1.21555 1.23099 1.18705 1.21663 0.97395 0.87640 0.93882 1.22800 0.92792 0.86254 0.95710 0.94054 1.86660 1.33334 1.60431 1.55800 1.22411 1.03314 0.95911 0.81521 1.47746 1.22681 1.46385 1.15080 1.22191 0.86496 1.01600 0.96106 1.17351 0.82283 0.78927 0.84518 1.90754 1.34087 1.57847 1.61241 1.23409 0.94627 1.05213 0.96688 1.22499 1.02779 1.03943 0.92385 1.25045 0.85359 0.97852 0.98425 1.19447 0.95699 0.95123 0.88180 1.21972 1.02553 0.91776 1.03465 1.21999 0.94374 1.00647 1.03115 1.21938 0.98599 1.03050 0.96854 1.84755 1.32682 1.51482 1.26128 1.74330 1.22221 1.14969 0.92139 0.98840 0.96108 0.95685 0.94904 0.90892 0.92083 0.77814 0.86253 0.89213 0.90866 0.89129 0.90701 0.79821 0.92114 0.92142 0.88694 0.88568 0.92800 0.92244 0.91742 0.92325 0.89098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.52 9.00 127.77 1.15 10.67 16 2 N -0.61 -31.30 2.87 -726.93 -2.09 -33.39 16 3 C -0.24 -12.94 9.02 84.03 0.76 -12.18 16 4 H 0.08 4.00 7.83 -2.91 -0.02 3.97 16 5 C -0.06 -3.49 5.21 84.86 0.44 -3.05 16 6 N -0.95 -59.16 10.51 21.65 0.23 -58.93 16 7 Si 0.97 46.38 29.56 68.60 2.03 48.41 16 8 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 9 H -0.30 -14.97 7.11 99.48 0.71 -14.27 16 10 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 11 C 0.12 4.78 5.43 86.38 0.47 5.25 16 12 C 0.09 3.35 3.48 30.59 0.11 3.46 16 13 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 14 O -0.56 -22.53 11.55 -148.98 -1.72 -24.25 16 15 C 0.09 2.64 5.06 86.38 0.44 3.08 16 16 N -0.59 -17.84 2.84 -849.63 -2.41 -20.25 16 17 C 0.08 1.94 9.41 127.77 1.20 3.14 16 18 C 0.58 20.03 7.70 86.93 0.67 20.70 16 19 O -0.56 -22.39 16.52 -3.71 -0.06 -22.45 16 20 C -0.04 -1.24 6.86 42.96 0.29 -0.95 16 21 C -0.19 -4.64 10.41 22.60 0.24 -4.41 16 22 C 0.00 -0.07 5.76 25.01 0.14 0.08 16 23 C 0.02 0.19 0.94 -52.93 -0.05 0.14 16 24 C -0.14 -1.19 8.36 71.98 0.60 -0.59 16 25 C -0.14 -1.51 8.36 71.98 0.60 -0.91 16 26 C -0.15 -1.28 8.07 71.98 0.58 -0.70 16 27 O 0.12 2.77 10.65 71.88 0.77 3.54 16 28 N -0.34 -8.90 8.72 -49.52 -0.43 -9.34 16 29 H -0.01 -0.41 7.34 -2.39 -0.02 -0.42 16 30 H 0.02 1.16 7.28 -2.38 -0.02 1.15 16 31 H 0.02 1.15 7.84 -2.39 -0.02 1.13 16 32 H 0.24 14.82 8.31 -92.71 -0.77 14.05 16 33 H 0.07 2.50 8.04 -2.39 -0.02 2.48 16 34 H 0.06 2.22 7.86 -2.39 -0.02 2.20 16 35 H 0.37 11.93 9.04 -74.06 -0.67 11.26 16 36 H 0.12 2.55 8.07 -2.39 -0.02 2.53 16 37 H 0.09 2.67 7.37 -2.38 -0.02 2.65 16 38 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.09 2.05 7.24 -2.39 -0.02 2.03 16 40 H 0.07 2.06 5.40 -2.39 -0.01 2.05 16 41 H 0.18 4.02 8.06 -2.91 -0.02 3.99 16 42 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 43 H 0.06 0.58 8.02 -2.39 -0.02 0.56 16 44 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 45 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 46 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.06 0.70 8.03 -2.39 -0.02 0.68 16 48 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 49 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 50 H 0.09 0.42 8.14 -2.38 -0.02 0.40 16 Total: -1.00 -77.77 406.63 4.21 -73.56 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: 0.26 Total: 19.38 kcal Atomic # 6 Polarization: 16.08 SS G_CDS: 7.64 Total: 23.72 kcal Atomic # 7 Polarization: -117.21 SS G_CDS: -4.70 Total: -121.91 kcal Atomic # 8 Polarization: -42.14 SS G_CDS: -1.02 Total: -43.16 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -77.77 4.21 -73.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755802340.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.826 kcal (2) G-P(sol) polarization free energy of solvation -77.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds