Wall clock time and date at job start Sat Apr 11 2020 05:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34773 * 119.99795 * 2 1 4 4 O 1.21367 * 119.99987 * 183.23794 * 3 2 1 5 5 C 1.49089 * 120.00007 * 3.24424 * 3 2 1 6 6 O 1.20777 * 120.00416 * 353.11642 * 5 3 2 7 7 C 1.50700 * 119.99937 * 173.11765 * 5 3 2 8 8 C 1.52998 * 109.47141 * 179.97438 * 7 5 3 9 9 C 1.53006 * 109.47144 * 299.99922 * 7 5 3 10 10 C 1.53005 * 109.47125 * 59.99585 * 7 5 3 11 11 C 1.46502 * 120.00047 * 180.02562 * 2 1 3 12 12 C 1.53778 * 113.61750 * 65.73078 * 11 2 1 13 13 C 1.53782 * 87.08257 * 270.88519 * 12 11 2 14 14 N 1.46897 * 113.61147 * 220.01912 * 13 12 11 15 15 C 1.46908 * 110.99547 * 205.00004 * 14 13 12 16 16 C 1.50701 * 109.46861 * 180.02562 * 15 14 13 17 17 O 1.21296 * 119.99950 * 359.97438 * 16 15 14 18 18 N 1.34778 * 120.00127 * 180.02562 * 16 15 14 19 19 C 1.37091 * 119.99964 * 180.02562 * 18 16 15 20 20 H 1.07995 * 120.00403 * 359.97438 * 19 18 16 21 21 C 1.38958 * 119.99811 * 180.02562 * 19 18 16 22 22 N 1.31410 * 119.99948 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99846 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47456 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47167 * 120.00071 * 23 21 19 26 26 H 1.48509 * 109.46939 * 239.99506 * 23 21 19 27 27 C 1.53777 * 113.61254 * 328.23255 * 11 2 1 28 28 H 1.08997 * 109.47015 * 203.35566 * 1 2 3 29 29 H 1.08994 * 109.47122 * 323.35802 * 1 2 3 30 30 H 1.09003 * 109.47313 * 83.35589 * 1 2 3 31 31 H 1.08998 * 109.46819 * 59.99912 * 8 7 5 32 32 H 1.09000 * 109.47294 * 179.97438 * 8 7 5 33 33 H 1.08999 * 109.47150 * 299.99721 * 8 7 5 34 34 H 1.08998 * 109.47182 * 60.00313 * 9 7 5 35 35 H 1.09000 * 109.47100 * 180.02562 * 9 7 5 36 36 H 1.09000 * 109.46692 * 299.99866 * 9 7 5 37 37 H 1.09005 * 109.46520 * 60.00393 * 10 7 5 38 38 H 1.09000 * 109.47015 * 179.97438 * 10 7 5 39 39 H 1.08997 * 109.47157 * 300.00207 * 10 7 5 40 40 H 1.08998 * 112.90491 * 196.99029 * 11 2 1 41 41 H 1.09000 * 113.61058 * 156.33450 * 12 11 2 42 42 H 1.08998 * 113.61105 * 25.43695 * 12 11 2 43 43 H 1.08997 * 113.61031 * 89.11350 * 13 12 11 44 44 H 1.00899 * 110.99925 * 81.04925 * 14 13 12 45 45 H 1.08996 * 109.47338 * 299.99771 * 15 14 13 46 46 H 1.09001 * 109.46972 * 60.00129 * 15 14 13 47 47 H 0.97006 * 119.99566 * 359.97438 * 18 16 15 48 48 H 0.96994 * 120.00072 * 180.02562 * 22 21 19 49 49 H 1.08997 * 113.61809 * 334.57216 * 27 11 2 50 50 H 1.09001 * 113.61772 * 203.66482 * 27 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3511 1.1681 -0.0594 5 6 1.3951 2.4573 0.0731 6 8 0.1892 2.4638 0.0069 7 6 2.1481 3.7533 0.2295 8 6 1.1560 4.9170 0.2770 9 6 2.9577 3.7193 1.5274 10 6 3.0953 3.9393 -0.9577 11 6 2.1975 -1.2687 -0.0006 12 6 2.0040 -2.0913 -1.2854 13 6 0.7873 -2.7328 -0.5978 14 7 0.6596 -4.1739 -0.8523 15 6 -0.7355 -4.6118 -0.7109 16 6 -0.8268 -6.0922 -0.9780 17 8 0.1720 -6.7204 -1.2591 18 7 -2.0184 -6.7178 -0.9057 19 6 -2.1013 -8.0645 -1.1483 20 1 -1.2119 -8.6241 -1.3977 21 6 -3.3299 -8.7095 -1.0742 22 7 -4.4122 -8.0285 -0.7712 23 14 -3.4430 -10.5444 -1.4054 24 1 -2.0927 -11.0742 -1.7232 25 1 -3.9747 -11.2328 -0.2018 26 1 -4.3519 -10.7847 -2.5550 27 6 1.4681 -2.4015 0.7407 28 1 -0.3633 -0.9434 0.4074 29 1 -0.3633 0.8245 0.6133 30 1 -0.3634 0.1189 -1.0208 31 1 0.4810 4.7846 1.1225 32 1 1.7006 5.8544 0.3906 33 1 0.5797 4.9411 -0.6479 34 1 3.6646 2.8903 1.4931 35 1 3.5020 4.6569 1.6407 36 1 2.2830 3.5868 2.3730 37 1 2.5185 3.9635 -1.8823 38 1 3.6396 4.8769 -0.8447 39 1 3.8021 3.1102 -0.9919 40 1 3.2412 -1.1561 0.2929 41 1 2.8151 -2.7927 -1.4810 42 1 1.7460 -1.4876 -2.1555 43 1 -0.1432 -2.1890 -0.7607 44 1 1.2681 -4.7034 -0.2461 45 1 -1.0807 -4.4039 0.3018 46 1 -1.3592 -4.0742 -1.4250 47 1 -2.8172 -6.2152 -0.6813 48 1 -5.2697 -8.4787 -0.7191 49 1 0.7772 -2.0484 1.5063 50 1 2.1325 -3.1878 1.0990 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755853512.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:31 Heat of formation + Delta-G solvation = -89.048050 kcal Electronic energy + Delta-G solvation = -29623.572765 eV Core-core repulsion = 25458.634661 eV Total energy + Delta-G solvation = -4164.938104 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.36914 -40.91102 -40.03242 -39.20249 -37.17425 -36.16423 -35.66053 -33.97816 -33.21769 -28.91013 -28.50731 -28.25387 -28.18925 -27.09782 -26.69991 -25.87400 -23.82487 -22.46560 -21.19269 -20.27638 -19.86251 -19.68029 -18.38917 -17.85313 -17.61543 -17.16497 -16.93945 -16.73109 -16.35861 -16.09409 -15.97632 -15.66468 -15.49794 -15.19608 -14.73841 -14.53325 -14.33331 -14.28605 -14.02587 -13.68074 -13.54060 -13.52405 -13.28098 -13.13042 -13.10971 -13.06766 -12.89310 -12.86132 -12.61778 -12.56006 -12.46288 -12.40339 -12.11744 -11.94559 -11.77474 -11.66976 -11.51737 -11.40574 -10.34051 -10.21253 -10.01747 -9.82911 -9.25747 -8.47311 -5.95849 -0.15367 1.36323 1.41872 1.46149 1.55948 1.80020 2.04927 2.28943 2.78139 2.93151 3.20052 3.38372 3.43286 3.49328 3.66116 3.83489 3.87054 3.91843 3.98967 4.10582 4.25924 4.31256 4.48039 4.49123 4.54068 4.58038 4.66133 4.70661 4.72121 4.75191 4.79257 4.84008 4.88650 4.92424 4.92676 5.00628 5.01642 5.08115 5.21339 5.25206 5.31621 5.40849 5.43242 5.79351 5.92177 6.12462 6.15035 6.41266 6.59866 6.75135 7.12464 7.56112 8.11466 8.70222 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.030866 B = 0.001778 C = 0.001716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.932289 B =15748.289989 C =16312.118548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.570 5.570 3 C 0.470 3.530 4 O -0.526 6.526 5 C 0.362 3.638 6 O -0.421 6.421 7 C -0.094 4.094 8 C -0.133 4.133 9 C -0.140 4.140 10 C -0.142 4.142 11 C 0.117 3.883 12 C -0.132 4.132 13 C 0.061 3.939 14 N -0.671 5.671 15 C 0.065 3.935 16 C 0.436 3.564 17 O -0.624 6.624 18 N -0.573 5.573 19 C -0.334 4.334 20 H 0.078 0.922 21 C -0.013 4.013 22 N -0.920 5.920 23 Si 0.993 3.007 24 H -0.274 1.274 25 H -0.270 1.270 26 H -0.271 1.271 27 C -0.164 4.164 28 H 0.090 0.910 29 H 0.097 0.903 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.087 0.913 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.090 0.910 36 H 0.059 0.941 37 H 0.055 0.945 38 H 0.089 0.911 39 H 0.065 0.935 40 H 0.106 0.894 41 H 0.095 0.905 42 H 0.066 0.934 43 H 0.112 0.888 44 H 0.348 0.652 45 H 0.070 0.930 46 H 0.103 0.897 47 H 0.397 0.603 48 H 0.278 0.722 49 H 0.085 0.915 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.920 27.877 5.618 30.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.303 5.303 3 C 0.256 3.744 4 O -0.403 6.403 5 C 0.233 3.767 6 O -0.291 6.291 7 C -0.095 4.095 8 C -0.190 4.190 9 C -0.197 4.197 10 C -0.199 4.199 11 C 0.013 3.987 12 C -0.172 4.172 13 C -0.049 4.049 14 N -0.303 5.303 15 C -0.067 4.067 16 C 0.224 3.776 17 O -0.511 6.511 18 N -0.210 5.210 19 C -0.463 4.463 20 H 0.096 0.904 21 C -0.213 4.213 22 N -0.561 5.561 23 Si 0.817 3.183 24 H -0.199 1.199 25 H -0.195 1.195 26 H -0.197 1.197 27 C -0.204 4.204 28 H 0.109 0.891 29 H 0.115 0.885 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.106 0.894 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.109 0.891 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.108 0.892 39 H 0.084 0.916 40 H 0.124 0.876 41 H 0.113 0.887 42 H 0.085 0.915 43 H 0.130 0.870 44 H 0.168 0.832 45 H 0.088 0.912 46 H 0.121 0.879 47 H 0.231 0.769 48 H 0.087 0.913 49 H 0.104 0.896 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 10.284 27.456 4.696 29.692 hybrid contribution -0.772 -1.055 0.685 1.476 sum 9.512 26.401 5.381 28.574 Atomic orbital electron populations 1.22615 0.77366 1.05115 1.03682 1.47791 1.08344 1.04926 1.69216 1.21261 0.88387 0.86207 0.78580 1.90703 1.13954 1.87148 1.48490 1.25125 0.89082 0.91469 0.71056 1.90357 1.16881 1.88723 1.33184 1.21045 0.97425 0.91359 0.99682 1.21782 0.97968 0.96654 1.02589 1.21877 0.99714 1.04372 0.93731 1.21918 0.98675 1.04218 0.95117 1.21895 0.96989 0.81963 0.97873 1.23455 0.98931 0.97935 0.96839 1.23473 0.98969 0.87653 0.94827 1.59996 1.05771 1.03856 1.60667 1.21587 0.92098 0.91161 1.01892 1.20941 0.83254 0.90731 0.82678 1.90495 1.37071 1.68897 1.54636 1.41940 1.08584 1.08735 1.61776 1.19700 0.95160 0.85120 1.46346 0.90381 1.26036 0.94125 1.04635 0.96501 1.69670 0.99529 1.38363 1.48502 0.84873 0.78207 0.76979 0.78288 1.19859 1.19533 1.19667 1.24057 1.00475 0.97982 0.97869 0.89139 0.88467 0.91605 0.92226 0.89437 0.92462 0.92052 0.89114 0.92190 0.92630 0.89221 0.91575 0.87582 0.88685 0.91541 0.87014 0.83188 0.91181 0.87923 0.76928 0.91297 0.89608 0.87725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.86 7.98 127.77 1.02 1.88 16 2 N -0.57 -10.76 3.08 -821.69 -2.53 -13.29 16 3 C 0.47 9.58 7.37 87.16 0.64 10.23 16 4 O -0.53 -12.55 12.99 -3.30 -0.04 -12.59 16 5 C 0.36 6.29 5.91 28.60 0.17 6.45 16 6 O -0.42 -8.00 12.79 -1.50 -0.02 -8.02 16 7 C -0.09 -1.21 0.76 -52.92 -0.04 -1.25 16 8 C -0.13 -1.37 7.76 71.98 0.56 -0.82 16 9 C -0.14 -1.58 8.29 71.98 0.60 -0.98 16 10 C -0.14 -1.75 8.29 71.98 0.60 -1.16 16 11 C 0.12 2.24 4.39 45.52 0.20 2.44 16 12 C -0.13 -2.82 7.61 31.12 0.24 -2.58 16 13 C 0.06 1.31 3.52 45.44 0.16 1.47 16 14 N -0.67 -20.17 6.24 -492.84 -3.08 -23.25 16 15 C 0.06 2.13 6.01 85.56 0.51 2.64 16 16 C 0.44 20.52 7.82 87.66 0.69 21.21 16 17 O -0.62 -34.52 15.78 -3.08 -0.05 -34.57 16 18 N -0.57 -29.18 5.29 -306.98 -1.62 -30.80 16 19 C -0.33 -18.94 9.68 84.04 0.81 -18.13 16 20 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 21 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 22 N -0.92 -49.34 13.05 21.67 0.28 -49.06 16 23 Si 0.99 42.89 29.55 68.60 2.03 44.92 16 24 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 25 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 26 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 27 C -0.16 -2.92 6.89 31.12 0.21 -2.71 16 28 H 0.09 1.27 4.60 -2.39 -0.01 1.26 16 29 H 0.10 1.56 5.47 -2.39 -0.01 1.55 16 30 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.06 0.66 8.10 -2.39 -0.02 0.64 16 32 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.06 0.66 8.10 -2.39 -0.02 0.65 16 34 H 0.06 0.91 6.66 -2.39 -0.02 0.89 16 35 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 38 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.07 1.08 6.22 -2.39 -0.01 1.06 16 40 H 0.11 2.17 7.36 -2.39 -0.02 2.15 16 41 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 42 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.11 2.18 5.45 -2.39 -0.01 2.17 16 44 H 0.35 10.90 7.89 -89.69 -0.71 10.19 16 45 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 46 H 0.10 3.05 8.13 -2.39 -0.02 3.03 16 47 H 0.40 19.07 7.90 -92.70 -0.73 18.34 16 48 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 49 H 0.09 1.36 7.10 -2.39 -0.02 1.34 16 50 H 0.10 1.83 7.82 -2.39 -0.02 1.81 16 Total: -1.00 -69.11 397.44 1.34 -67.77 By element: Atomic # 1 Polarization: 40.91 SS G_CDS: -0.46 Total: 40.44 kcal Atomic # 6 Polarization: 11.62 SS G_CDS: 6.83 Total: 18.45 kcal Atomic # 7 Polarization: -109.46 SS G_CDS: -6.95 Total: -116.40 kcal Atomic # 8 Polarization: -55.07 SS G_CDS: -0.11 Total: -55.18 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -69.11 1.34 -67.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755853512.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.278 kcal (2) G-P(sol) polarization free energy of solvation -69.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds