Wall clock time and date at job start Sat Apr 11 2020 05:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46503 * 120.00262 * 2 1 4 4 C 1.52994 * 109.46985 * 270.00238 * 3 2 1 5 5 O 1.42895 * 109.47280 * 64.99797 * 4 3 2 6 6 C 1.42908 * 113.99765 * 179.97438 * 5 4 3 7 7 C 1.53002 * 109.46925 * 179.97438 * 6 5 4 8 8 N 1.46509 * 109.46531 * 65.00492 * 7 6 5 9 9 C 1.36938 * 119.99508 * 179.97438 * 8 7 6 10 10 H 1.07998 * 120.00260 * 359.97438 * 9 8 7 11 11 C 1.38812 * 119.99557 * 179.97438 * 9 8 7 12 12 N 1.31616 * 120.00466 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99805 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.46880 * 60.00435 * 13 11 9 15 15 H 1.48505 * 109.46958 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47132 * 300.00268 * 13 11 9 17 17 C 1.34777 * 119.99615 * 180.02562 * 2 1 3 18 18 O 1.21504 * 119.99885 * 183.77899 * 17 2 1 19 19 C 1.48336 * 120.00248 * 3.77877 * 17 2 1 20 20 C 1.42271 * 126.93649 * 172.92424 * 19 17 2 21 21 C 1.35311 * 103.91808 * 180.13137 * 20 19 17 22 22 C 1.50706 * 126.66819 * 179.91488 * 21 20 19 23 23 C 1.52995 * 109.46813 * 59.70824 * 22 21 20 24 24 C 1.53001 * 109.46628 * 299.71140 * 22 21 20 25 25 C 1.52998 * 109.47263 * 179.71137 * 22 21 20 26 26 O 1.34019 * 106.66940 * 359.64722 * 21 20 19 27 27 N 1.20898 * 111.84715 * 0.24389 * 26 21 20 28 28 H 1.09007 * 109.47098 * 264.01015 * 1 2 3 29 29 H 1.09004 * 109.46943 * 24.00977 * 1 2 3 30 30 H 1.08996 * 109.47249 * 144.01005 * 1 2 3 31 31 H 1.08997 * 109.46591 * 30.00393 * 3 2 1 32 32 H 1.09000 * 109.46909 * 150.00116 * 3 2 1 33 33 H 1.09007 * 109.47047 * 185.00352 * 4 3 2 34 34 H 1.09006 * 109.47344 * 304.99636 * 4 3 2 35 35 H 1.08995 * 109.47699 * 300.00347 * 6 5 4 36 36 H 1.09004 * 109.46892 * 60.00465 * 6 5 4 37 37 H 1.09001 * 109.47348 * 184.99983 * 7 6 5 38 38 H 1.08997 * 109.47783 * 305.00903 * 7 6 5 39 39 H 0.96993 * 120.00212 * 359.97438 * 8 7 6 40 40 H 0.96997 * 120.00406 * 179.97438 * 12 11 9 41 41 H 1.07992 * 128.04199 * 0.04458 * 20 19 17 42 42 H 1.09001 * 109.47621 * 60.00710 * 23 22 21 43 43 H 1.09004 * 109.47372 * 300.00074 * 23 22 21 44 44 H 1.09009 * 109.47022 * 180.02562 * 23 22 21 45 45 H 1.09000 * 109.46791 * 179.97438 * 24 22 21 46 46 H 1.09002 * 109.47137 * 299.99700 * 24 22 21 47 47 H 1.09004 * 109.47441 * 59.99997 * 24 22 21 48 48 H 1.09002 * 109.47084 * 299.99814 * 25 22 21 49 49 H 1.09002 * 109.47285 * 59.99820 * 25 22 21 50 50 H 1.09000 * 109.47132 * 179.97438 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7104 -1.4424 5 8 1.2061 1.9935 -2.0813 6 6 1.3325 2.4175 -3.4402 7 6 -0.0565 2.6905 -4.0206 8 7 -0.6660 3.8217 -3.3167 9 6 -1.9182 4.2515 -3.6667 10 1 -2.4563 3.7568 -4.4618 11 6 -2.4959 5.3229 -2.9995 12 7 -1.8400 5.9261 -2.0309 13 14 -4.2044 5.9087 -3.4765 14 1 -5.1773 4.8026 -3.2888 15 1 -4.5905 7.0587 -2.6198 16 1 -4.2035 6.3309 -4.9002 17 6 2.1388 -1.1672 -0.0005 18 8 3.3518 -1.1685 0.0688 19 6 1.3995 -2.4504 -0.0858 20 6 1.9576 -3.7502 -0.2377 21 6 0.8789 -4.5666 -0.2644 22 6 0.8887 -6.0665 -0.4111 23 6 1.6794 -6.6865 0.7427 24 6 1.5451 -6.4445 -1.7404 25 6 -0.5484 -6.5909 -0.3845 26 8 -0.1998 -3.7828 -0.1292 27 7 0.1013 -2.6160 -0.0315 28 1 -0.3634 -0.1072 1.0221 29 1 -0.3633 0.9388 -0.4182 30 1 -0.3633 -0.8315 -0.6039 31 1 1.6085 2.0283 0.5139 32 1 3.1500 1.1383 0.5138 33 1 3.0734 2.6063 -1.4438 34 1 2.9642 0.9130 -1.9816 35 1 1.9299 3.3282 -3.4826 36 1 1.8212 1.6351 -4.0209 37 1 0.0328 2.9277 -5.0807 38 1 -0.6821 1.8064 -3.8975 39 1 -0.1826 4.2662 -2.6029 40 1 -2.2436 6.6750 -1.5650 41 1 2.9999 -4.0220 -0.3153 42 1 1.2118 -6.4172 1.6898 43 1 2.7032 -6.3128 0.7237 44 1 1.6869 -7.7713 0.6364 45 1 1.5526 -7.5293 -1.8463 46 1 0.9818 -6.0027 -2.5624 47 1 2.5689 -6.0709 -1.7594 48 1 -1.0160 -6.3215 0.5626 49 1 -1.1117 -6.1491 -1.2065 50 1 -0.5413 -7.6757 -0.4910 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755874158.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:35 Heat of formation + Delta-G solvation = -25.796496 kcal Electronic energy + Delta-G solvation = -29841.200862 eV Core-core repulsion = 25679.005551 eV Total energy + Delta-G solvation = -4162.195311 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -46.21860 -41.09615 -39.10169 -38.29034 -36.98304 -36.23095 -35.10755 -33.44359 -32.13892 -31.19894 -29.35053 -28.33190 -28.16022 -27.79506 -25.94601 -25.48728 -24.25106 -23.65374 -22.82795 -21.92813 -19.85798 -19.25920 -18.93547 -18.46115 -18.00258 -17.67552 -17.36396 -16.95579 -16.66449 -16.20814 -15.77913 -15.61180 -15.26048 -15.02284 -14.98076 -14.74147 -14.64353 -14.59414 -14.33544 -13.99680 -13.70677 -13.27957 -13.20616 -13.15925 -13.06872 -12.88135 -12.73355 -12.61258 -12.56088 -12.53757 -12.22618 -12.07763 -12.01238 -11.92972 -11.78410 -11.72560 -11.59889 -11.48244 -10.96578 -10.56930 -10.47371 -9.91380 -8.99481 -7.93494 -5.22416 -0.01845 0.60436 1.46740 1.50369 1.56389 1.58781 1.91402 1.93949 2.56473 2.71438 2.74553 3.25075 3.39799 3.76929 3.82676 3.92413 3.93338 3.96180 3.97835 4.06365 4.19614 4.21107 4.30621 4.37909 4.42097 4.42597 4.47232 4.53047 4.61469 4.73525 4.78743 4.80093 4.80810 4.89514 4.94214 4.99910 5.01321 5.01496 5.09771 5.10547 5.26457 5.30095 5.39787 5.42757 5.47957 6.01734 6.25978 6.30292 6.68725 7.00223 7.34374 8.09591 8.34790 9.29779 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014143 B = 0.002295 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.259702 B =12198.540512 C =13158.724066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.588 5.588 3 C 0.117 3.883 4 C 0.046 3.954 5 O -0.394 6.394 6 C 0.067 3.933 7 C 0.151 3.849 8 N -0.739 5.739 9 C -0.248 4.248 10 H 0.074 0.926 11 C -0.076 4.076 12 N -0.968 5.968 13 Si 0.975 3.025 14 H -0.279 1.279 15 H -0.294 1.294 16 H -0.276 1.276 17 C 0.591 3.409 18 O -0.555 6.555 19 C -0.044 4.044 20 C -0.187 4.187 21 C -0.006 4.006 22 C 0.017 3.983 23 C -0.141 4.141 24 C -0.142 4.142 25 C -0.149 4.149 26 O 0.122 5.878 27 N -0.341 5.341 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.111 0.889 33 H 0.076 0.924 34 H 0.046 0.954 35 H 0.051 0.949 36 H 0.070 0.930 37 H 0.044 0.956 38 H 0.019 0.981 39 H 0.376 0.624 40 H 0.251 0.749 41 H 0.191 0.809 42 H 0.056 0.944 43 H 0.063 0.937 44 H 0.093 0.907 45 H 0.094 0.906 46 H 0.054 0.946 47 H 0.063 0.937 48 H 0.060 0.940 49 H 0.057 0.943 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.889 -29.213 4.880 31.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.319 5.319 3 C -0.004 4.004 4 C -0.031 4.031 5 O -0.314 6.314 6 C -0.010 4.010 7 C 0.025 3.975 8 N -0.382 5.382 9 C -0.380 4.380 10 H 0.092 0.908 11 C -0.268 4.268 12 N -0.618 5.618 13 Si 0.803 3.197 14 H -0.205 1.205 15 H -0.221 1.221 16 H -0.203 1.203 17 C 0.378 3.622 18 O -0.433 6.433 19 C -0.201 4.201 20 C -0.209 4.209 21 C -0.070 4.070 22 C 0.015 3.985 23 C -0.198 4.198 24 C -0.199 4.199 25 C -0.206 4.206 26 O 0.047 5.953 27 N -0.043 5.043 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.100 0.900 31 H 0.115 0.885 32 H 0.129 0.871 33 H 0.094 0.906 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.062 0.938 38 H 0.037 0.963 39 H 0.208 0.792 40 H 0.060 0.940 41 H 0.208 0.792 42 H 0.076 0.924 43 H 0.082 0.918 44 H 0.112 0.888 45 H 0.112 0.888 46 H 0.073 0.927 47 H 0.082 0.918 48 H 0.079 0.921 49 H 0.076 0.924 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 9.192 -28.296 5.052 30.177 hybrid contribution 0.131 0.879 -0.116 0.896 sum 9.322 -27.417 4.935 29.376 Atomic orbital electron populations 1.22059 0.77468 1.04025 1.02310 1.47740 1.08374 1.05459 1.70366 1.21749 0.98945 0.83965 0.95783 1.22962 0.86645 0.99886 0.93636 1.87982 1.29716 1.87647 1.26028 1.22653 0.97073 0.98588 0.82656 1.20850 0.91912 0.89861 0.94882 1.42459 1.17310 1.36119 1.42351 1.19608 0.93673 1.10667 1.14008 0.90760 1.25584 1.02611 0.99505 0.99092 1.69821 1.39513 1.25504 1.27005 0.85198 0.79788 0.77290 0.77389 1.20488 1.22052 1.20250 1.17226 0.86039 0.82247 0.76691 1.90741 1.13356 1.87054 1.52105 1.23440 0.90610 0.96945 1.09087 1.22494 1.02443 0.88648 1.07350 1.25100 0.84264 0.97027 1.00585 1.19442 0.99242 0.80943 0.98843 1.21976 0.99616 1.02305 0.95902 1.21986 1.00595 1.03625 0.93729 1.21947 0.92993 1.02957 1.02737 1.84784 1.34312 1.11617 1.64588 1.74406 1.15631 0.97401 1.16828 0.91701 0.90776 0.89995 0.88533 0.87081 0.90638 0.93537 0.93028 0.91145 0.93840 0.96328 0.79226 0.94029 0.79168 0.92446 0.91776 0.88795 0.88762 0.92686 0.91781 0.92114 0.92358 0.89139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.49 9.41 127.77 1.20 3.69 16 2 N -0.59 -17.33 2.84 -849.63 -2.41 -19.74 16 3 C 0.12 3.19 5.81 86.38 0.50 3.69 16 4 C 0.05 1.32 6.28 71.98 0.45 1.77 16 5 O -0.39 -14.13 9.23 -148.98 -1.37 -15.50 16 6 C 0.07 2.29 6.07 71.98 0.44 2.73 16 7 C 0.15 6.36 6.65 86.38 0.57 6.93 16 8 N -0.74 -39.27 5.55 -343.43 -1.91 -41.18 16 9 C -0.25 -14.29 9.99 84.03 0.84 -13.45 16 10 H 0.07 4.10 7.83 -2.91 -0.02 4.08 16 11 C -0.08 -4.45 5.50 84.86 0.47 -3.99 16 12 N -0.97 -60.50 13.06 21.65 0.28 -60.22 16 13 Si 0.97 47.02 29.55 68.60 2.03 49.05 16 14 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 15 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 16 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 17 C 0.59 17.94 7.70 86.93 0.67 18.61 16 18 O -0.55 -18.51 16.52 -3.73 -0.06 -18.57 16 19 C -0.04 -1.17 6.86 42.96 0.29 -0.87 16 20 C -0.19 -3.81 10.41 22.60 0.24 -3.58 16 21 C -0.01 -0.11 5.76 25.01 0.14 0.03 16 22 C 0.02 0.16 0.94 -52.93 -0.05 0.11 16 23 C -0.14 -0.97 8.36 71.98 0.60 -0.37 16 24 C -0.14 -1.08 8.36 71.98 0.60 -0.48 16 25 C -0.15 -1.23 8.07 71.98 0.58 -0.65 16 26 O 0.12 2.67 10.65 71.86 0.77 3.44 16 27 N -0.34 -8.99 8.72 -49.53 -0.43 -9.42 16 28 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 29 H 0.07 2.51 7.24 -2.38 -0.02 2.49 16 30 H 0.08 2.49 5.40 -2.39 -0.01 2.48 16 31 H 0.10 2.59 8.07 -2.39 -0.02 2.57 16 32 H 0.11 2.74 7.37 -2.39 -0.02 2.72 16 33 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 34 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 35 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.38 21.32 7.67 -92.71 -0.71 20.61 16 40 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 41 H 0.19 3.21 8.06 -2.91 -0.02 3.19 16 42 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 43 H 0.06 0.46 8.03 -2.38 -0.02 0.44 16 44 H 0.09 0.27 8.14 -2.38 -0.02 0.25 16 45 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 46 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 47 H 0.06 0.50 8.03 -2.38 -0.02 0.48 16 48 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 49 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 50 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 Total: -1.00 -72.91 413.61 4.66 -68.26 By element: Atomic # 1 Polarization: 29.51 SS G_CDS: 0.22 Total: 29.73 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: 7.55 Total: 14.17 kcal Atomic # 7 Polarization: -126.10 SS G_CDS: -4.47 Total: -130.56 kcal Atomic # 8 Polarization: -29.97 SS G_CDS: -0.67 Total: -30.64 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.05 kcal Total: -72.91 4.66 -68.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755874158.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.459 kcal (2) G-P(sol) polarization free energy of solvation -72.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds