Wall clock time and date at job start Sat Apr 11 2020 05:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52991 * 110.49108 * 2 1 4 4 C 1.54571 * 110.43950 * 122.49021 * 2 1 3 5 5 C 1.54489 * 102.14666 * 145.58679 * 4 2 1 6 6 C 1.52999 * 110.37287 * 225.71047 * 5 4 2 7 7 N 1.46506 * 110.36863 * 103.49053 * 5 4 2 8 8 C 1.34777 * 120.00032 * 180.02562 * 7 5 4 9 9 O 1.21582 * 119.99954 * 354.95459 * 8 7 5 10 10 N 1.34777 * 119.99864 * 174.95805 * 8 7 5 11 11 C 1.47072 * 120.87874 * 184.71413 * 10 8 7 12 12 C 1.53700 * 108.27727 * 128.75643 * 11 10 8 13 13 N 1.46898 * 109.25431 * 54.07883 * 12 11 10 14 14 C 1.46904 * 110.99578 * 172.61179 * 13 12 11 15 15 C 1.50705 * 109.47042 * 294.29876 * 14 13 12 16 16 H 1.08002 * 119.99679 * 0.02562 * 15 14 13 17 17 C 1.37875 * 119.99939 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00029 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00075 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47092 * 90.00274 * 19 17 15 21 21 H 1.48494 * 109.47561 * 210.00827 * 19 17 15 22 22 H 1.48506 * 109.47168 * 330.00977 * 19 17 15 23 23 C 1.46895 * 111.26826 * 296.75869 * 13 12 11 24 24 C 1.47081 * 120.87887 * 4.99296 * 10 8 7 25 25 C 1.51330 * 104.82396 * 344.65570 * 5 4 2 26 26 O 1.20822 * 125.09393 * 177.66274 * 25 5 4 27 27 O 1.34066 * 109.81238 * 357.68113 * 25 5 4 28 28 H 1.09006 * 109.46595 * 297.51084 * 1 2 3 29 29 H 1.08996 * 109.46793 * 57.51004 * 1 2 3 30 30 H 1.08995 * 109.47216 * 177.51284 * 1 2 3 31 31 H 1.09002 * 109.47605 * 182.48951 * 3 2 1 32 32 H 1.09005 * 109.47426 * 302.48765 * 3 2 1 33 33 H 1.08997 * 109.47651 * 62.49069 * 3 2 1 34 34 H 1.09003 * 110.86765 * 27.42370 * 4 2 1 35 35 H 1.08998 * 111.04648 * 263.83252 * 4 2 1 36 36 H 1.09007 * 109.46659 * 298.46227 * 6 5 4 37 37 H 1.09001 * 109.47259 * 58.45427 * 6 5 4 38 38 H 1.08995 * 109.47381 * 178.46570 * 6 5 4 39 39 H 0.97000 * 119.99311 * 0.02562 * 7 5 4 40 40 H 1.09004 * 109.63046 * 248.52497 * 11 10 8 41 41 H 1.08999 * 109.63042 * 9.09985 * 11 10 8 42 42 H 1.09003 * 109.64450 * 294.07425 * 12 11 10 43 43 H 1.09003 * 109.42080 * 173.94837 * 12 11 10 44 44 H 1.09000 * 109.47348 * 54.29947 * 14 13 12 45 45 H 1.08994 * 109.46860 * 174.30622 * 14 13 12 46 46 H 0.97003 * 119.99515 * 179.97438 * 18 17 15 47 47 H 1.09001 * 109.49120 * 303.14155 * 23 13 12 48 48 H 1.09007 * 109.48811 * 183.07165 * 23 13 12 49 49 H 1.08993 * 109.62953 * 350.89320 * 24 10 8 50 50 H 1.09001 * 109.62705 * 111.47675 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0656 1.4331 0.0000 4 6 2.0699 -0.7780 1.2217 5 6 3.3509 -1.4279 0.6531 6 6 3.4279 -2.9002 1.0621 7 7 4.5383 -0.7074 1.1194 8 6 5.7656 -1.1125 0.7373 9 8 5.8938 -2.1284 0.0818 10 7 6.8509 -0.3915 1.0819 11 6 8.1877 -0.7576 0.5901 12 6 8.8336 0.4933 -0.0268 13 7 8.8114 1.5848 0.9561 14 6 9.5735 2.7439 0.4727 15 6 11.0314 2.3775 0.3658 16 1 11.3589 1.3828 0.6301 17 6 11.9468 3.3117 -0.0703 18 7 11.5478 4.5227 -0.3925 19 14 13.7540 2.8577 -0.2021 20 1 14.0314 2.3185 -1.5577 21 1 14.5861 4.0655 0.0300 22 1 14.0814 1.8279 0.8166 23 6 7.4346 1.9655 1.2984 24 6 6.7305 0.7787 1.9648 25 6 3.2148 -1.3025 -0.8488 26 8 4.0418 -1.6607 -1.6535 27 8 2.0393 -0.7341 -1.1527 28 1 -0.3633 0.4747 0.9115 29 1 -0.3633 0.5520 -0.8668 30 1 -0.3633 -1.0266 -0.0446 31 1 3.1546 1.4141 -0.0446 32 1 1.6758 1.9668 -0.8669 33 1 1.7482 1.9397 0.9114 34 1 1.3583 -1.5387 1.5429 35 1 2.3090 -0.1015 2.0422 36 1 3.4718 -2.9735 2.1488 37 1 2.5447 -3.4251 0.6980 38 1 4.3219 -3.3507 0.6312 39 1 4.4410 0.0612 1.7031 40 1 8.7972 -1.1170 1.4192 41 1 8.0987 -1.5366 -0.1671 42 1 8.2776 0.7924 -0.9154 43 1 9.8651 0.2711 -0.3005 44 1 9.2007 3.0408 -0.5076 45 1 9.4574 3.5721 1.1718 46 1 12.1920 5.1800 -0.6990 47 1 6.8981 2.2443 0.3915 48 1 7.4514 2.8113 1.9859 49 1 5.6776 1.0159 2.1168 50 1 7.2026 0.5642 2.9235 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772444878.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:45 Heat of formation + Delta-G solvation = -84.459549 kcal Electronic energy + Delta-G solvation = -31528.346674 eV Core-core repulsion = 27363.607542 eV Total energy + Delta-G solvation = -4164.739132 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.90800 -40.01143 -37.94928 -37.62265 -35.63163 -34.43890 -33.74148 -32.47663 -31.54139 -30.43779 -28.13382 -27.96992 -27.42049 -25.49658 -24.30101 -23.28800 -22.35787 -21.87919 -21.19917 -19.86524 -19.12008 -18.13559 -17.23945 -16.87127 -16.36131 -16.23863 -15.62666 -15.33732 -15.13063 -14.72844 -14.54160 -14.45265 -14.16830 -13.89977 -13.83869 -13.73187 -13.53022 -13.25031 -13.04660 -12.88067 -12.57707 -12.47869 -12.35044 -12.28369 -12.11437 -12.00460 -11.95643 -11.43073 -11.29293 -11.15246 -10.83837 -10.83379 -10.75063 -10.61575 -10.52230 -10.47299 -9.89639 -9.72611 -9.27202 -9.17417 -8.49071 -8.35201 -7.33789 -6.06399 -4.08081 1.79894 2.68662 2.88651 3.21025 3.30945 3.37208 3.41228 3.59681 3.69386 3.83558 4.00201 4.19988 4.38669 4.39658 4.70580 4.73403 4.95182 5.03550 5.11602 5.16333 5.21877 5.22880 5.27085 5.27862 5.30872 5.33178 5.41366 5.49233 5.57341 5.64190 5.67711 5.82191 5.92032 6.02022 6.07087 6.16231 6.22155 6.42114 6.56773 6.58800 6.65807 6.97377 7.20864 7.27848 7.43338 7.73902 7.93301 8.00254 8.11562 8.47074 8.66310 8.99205 9.56612 11.04499 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020584 B = 0.002632 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.933266 B =10633.879579 C =11138.146469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.104 3.896 3 C -0.169 4.169 4 C -0.150 4.150 5 C 0.142 3.858 6 C -0.157 4.157 7 N -0.736 5.736 8 C 0.704 3.296 9 O -0.564 6.564 10 N -0.623 5.623 11 C 0.134 3.866 12 C 0.050 3.950 13 N -0.534 5.534 14 C 0.194 3.806 15 C -0.509 4.509 16 H 0.064 0.936 17 C 0.056 3.944 18 N -0.899 5.899 19 Si 0.898 3.102 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.272 1.272 23 C 0.040 3.960 24 C 0.119 3.881 25 C 0.468 3.532 26 O -0.410 6.410 27 O -0.342 6.342 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.107 0.893 35 H 0.103 0.897 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.099 0.901 39 H 0.398 0.602 40 H 0.071 0.929 41 H 0.089 0.911 42 H 0.025 0.975 43 H 0.097 0.903 44 H -0.009 1.009 45 H 0.031 0.969 46 H 0.262 0.738 47 H 0.025 0.975 48 H 0.080 0.920 49 H 0.065 0.935 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.853 -8.281 7.677 27.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.067 3.933 3 C -0.226 4.226 4 C -0.188 4.188 5 C 0.052 3.948 6 C -0.215 4.215 7 N -0.399 5.399 8 C 0.406 3.594 9 O -0.440 6.440 10 N -0.361 5.361 11 C 0.012 3.988 12 C -0.079 4.079 13 N -0.259 5.259 14 C 0.069 3.931 15 C -0.548 4.548 16 H 0.083 0.917 17 C -0.146 4.146 18 N -0.538 5.538 19 Si 0.726 3.274 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.197 1.197 23 C -0.089 4.089 24 C -0.005 4.005 25 C 0.303 3.697 26 O -0.287 6.287 27 O -0.259 6.259 28 H 0.101 0.899 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.125 0.875 35 H 0.122 0.878 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.117 0.883 39 H 0.237 0.763 40 H 0.089 0.911 41 H 0.108 0.892 42 H 0.043 0.957 43 H 0.116 0.884 44 H 0.008 0.992 45 H 0.049 0.951 46 H 0.071 0.929 47 H 0.044 0.956 48 H 0.099 0.901 49 H 0.084 0.916 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -24.138 -9.204 6.917 26.744 hybrid contribution 0.586 0.851 -0.435 1.121 sum -23.552 -8.353 6.482 25.816 Atomic orbital electron populations 1.21874 0.90687 1.03754 1.03633 1.23060 0.96006 0.91845 0.82406 1.22291 1.02262 0.94007 1.04021 1.23413 0.95961 1.01180 0.98266 1.21318 0.85651 0.95781 0.92060 1.22175 1.05025 0.91906 1.02400 1.45219 1.03645 1.35356 1.55657 1.15839 0.80123 0.83424 0.80025 1.90919 1.84578 1.24848 1.43670 1.47413 1.06809 1.30076 1.51781 1.21844 0.80019 0.97648 0.99329 1.22459 1.01599 0.91059 0.92765 1.62087 1.09698 1.11070 1.43069 1.19721 0.92729 0.86859 0.93753 1.21140 0.91540 0.98476 1.43599 0.91749 1.24990 0.99235 0.94917 0.95433 1.69957 1.34667 1.03957 1.45226 0.86492 0.84549 0.77910 0.78448 1.20690 1.21267 1.19709 1.22379 0.91303 0.96191 0.99073 1.21760 0.98956 0.85739 0.94030 1.23321 0.79746 0.75439 0.91176 1.90808 1.37915 1.43469 1.56511 1.87124 1.35593 1.62832 1.40388 0.89896 0.90935 0.91099 0.91672 0.90666 0.89866 0.87452 0.87819 0.91102 0.91606 0.88255 0.76328 0.91095 0.89235 0.95714 0.88449 0.99155 0.95094 0.92886 0.95647 0.90135 0.91634 0.90487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.63 8.91 37.16 0.33 -0.30 16 2 C 0.10 0.73 1.24 -89.80 -0.11 0.62 16 3 C -0.17 -1.11 8.80 37.15 0.33 -0.78 16 4 C -0.15 -0.85 5.52 -25.12 -0.14 -0.99 16 5 C 0.14 1.46 0.96 -131.88 -0.13 1.34 16 6 C -0.16 -1.60 8.34 37.16 0.31 -1.29 16 7 N -0.74 -8.24 5.06 -52.47 -0.27 -8.51 16 8 C 0.70 10.96 7.68 -86.92 -0.67 10.30 16 9 O -0.56 -10.77 11.85 -15.20 -0.18 -10.95 16 10 N -0.62 -9.55 3.00 -177.92 -0.53 -10.09 16 11 C 0.13 2.28 6.61 -3.37 -0.02 2.25 16 12 C 0.05 0.99 5.47 -3.46 -0.02 0.97 16 13 N -0.53 -11.04 4.62 -235.46 -1.09 -12.13 16 14 C 0.19 4.93 4.72 -4.97 -0.02 4.91 16 15 C -0.51 -14.01 8.41 -34.44 -0.29 -14.30 16 16 H 0.06 1.75 7.13 -52.49 -0.37 1.37 16 17 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 18 N -0.90 -26.46 13.29 55.43 0.74 -25.72 16 19 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 23 C 0.04 0.66 5.62 -3.71 -0.02 0.64 16 24 C 0.12 1.53 6.59 -3.60 -0.02 1.50 16 25 C 0.47 6.69 7.11 36.31 0.26 6.95 16 26 O -0.41 -7.88 15.99 -25.49 -0.41 -8.29 16 27 O -0.34 -4.08 10.48 -38.48 -0.40 -4.49 16 28 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.56 8.03 -51.93 -0.42 0.14 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.11 0.40 7.60 -51.93 -0.39 0.01 16 35 H 0.10 0.35 7.43 -51.93 -0.39 -0.04 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.10 1.40 5.91 -51.93 -0.31 1.10 16 39 H 0.40 3.30 5.70 -40.82 -0.23 3.06 16 40 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.09 1.57 7.09 -51.93 -0.37 1.21 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.10 2.04 6.67 -51.93 -0.35 1.69 16 44 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 45 H 0.03 0.83 7.97 -51.93 -0.41 0.42 16 46 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 47 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.08 1.25 7.99 -51.93 -0.41 0.83 16 49 H 0.07 0.60 5.63 -51.93 -0.29 0.31 16 50 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 389.73 15.07 5.87 5.87 Total: -1.00 -35.87 389.73 -9.76 -45.63 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -8.15 Total: -1.09 kcal Atomic # 6 Polarization: 13.61 SS G_CDS: -0.31 Total: 13.30 kcal Atomic # 7 Polarization: -55.30 SS G_CDS: -1.15 Total: -56.45 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: -0.99 Total: -23.73 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.87 -9.76 -45.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772444878.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.830 kcal (2) G-P(sol) polarization free energy of solvation -35.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds