Wall clock time and date at job start Sat Apr 11 2020 05:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52991 * 110.49108 * 2 1 4 4 C 1.54571 * 110.43950 * 122.49021 * 2 1 3 5 5 C 1.54489 * 102.14666 * 145.58679 * 4 2 1 6 6 C 1.52999 * 110.37287 * 225.71047 * 5 4 2 7 7 N 1.46506 * 110.36863 * 103.49053 * 5 4 2 8 8 C 1.34777 * 120.00032 * 180.02562 * 7 5 4 9 9 O 1.21582 * 119.99954 * 354.95459 * 8 7 5 10 10 N 1.34777 * 119.99864 * 174.95805 * 8 7 5 11 11 C 1.47072 * 120.87874 * 184.71413 * 10 8 7 12 12 C 1.53700 * 108.27727 * 128.75643 * 11 10 8 13 13 N 1.46898 * 109.25431 * 54.07883 * 12 11 10 14 14 C 1.46904 * 110.99578 * 172.61179 * 13 12 11 15 15 C 1.50705 * 109.47042 * 294.29876 * 14 13 12 16 16 H 1.08002 * 119.99679 * 0.02562 * 15 14 13 17 17 C 1.37875 * 119.99939 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00029 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00075 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47092 * 90.00274 * 19 17 15 21 21 H 1.48494 * 109.47561 * 210.00827 * 19 17 15 22 22 H 1.48506 * 109.47168 * 330.00977 * 19 17 15 23 23 C 1.46895 * 111.26826 * 296.75869 * 13 12 11 24 24 C 1.47081 * 120.87887 * 4.99296 * 10 8 7 25 25 C 1.51330 * 104.82396 * 344.65570 * 5 4 2 26 26 O 1.20822 * 125.09393 * 177.66274 * 25 5 4 27 27 O 1.34066 * 109.81238 * 357.68113 * 25 5 4 28 28 H 1.09006 * 109.46595 * 297.51084 * 1 2 3 29 29 H 1.08996 * 109.46793 * 57.51004 * 1 2 3 30 30 H 1.08995 * 109.47216 * 177.51284 * 1 2 3 31 31 H 1.09002 * 109.47605 * 182.48951 * 3 2 1 32 32 H 1.09005 * 109.47426 * 302.48765 * 3 2 1 33 33 H 1.08997 * 109.47651 * 62.49069 * 3 2 1 34 34 H 1.09003 * 110.86765 * 27.42370 * 4 2 1 35 35 H 1.08998 * 111.04648 * 263.83252 * 4 2 1 36 36 H 1.09007 * 109.46659 * 298.46227 * 6 5 4 37 37 H 1.09001 * 109.47259 * 58.45427 * 6 5 4 38 38 H 1.08995 * 109.47381 * 178.46570 * 6 5 4 39 39 H 0.97000 * 119.99311 * 0.02562 * 7 5 4 40 40 H 1.09004 * 109.63046 * 248.52497 * 11 10 8 41 41 H 1.08999 * 109.63042 * 9.09985 * 11 10 8 42 42 H 1.09003 * 109.64450 * 294.07425 * 12 11 10 43 43 H 1.09003 * 109.42080 * 173.94837 * 12 11 10 44 44 H 1.09000 * 109.47348 * 54.29947 * 14 13 12 45 45 H 1.08994 * 109.46860 * 174.30622 * 14 13 12 46 46 H 0.97003 * 119.99515 * 179.97438 * 18 17 15 47 47 H 1.09001 * 109.49120 * 303.14155 * 23 13 12 48 48 H 1.09007 * 109.48811 * 183.07165 * 23 13 12 49 49 H 1.08993 * 109.62953 * 350.89320 * 24 10 8 50 50 H 1.09001 * 109.62705 * 111.47675 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0656 1.4331 0.0000 4 6 2.0699 -0.7780 1.2217 5 6 3.3509 -1.4279 0.6531 6 6 3.4279 -2.9002 1.0621 7 7 4.5383 -0.7074 1.1194 8 6 5.7656 -1.1125 0.7373 9 8 5.8938 -2.1284 0.0818 10 7 6.8509 -0.3915 1.0819 11 6 8.1877 -0.7576 0.5901 12 6 8.8336 0.4933 -0.0268 13 7 8.8114 1.5848 0.9561 14 6 9.5735 2.7439 0.4727 15 6 11.0314 2.3775 0.3658 16 1 11.3589 1.3828 0.6301 17 6 11.9468 3.3117 -0.0703 18 7 11.5478 4.5227 -0.3925 19 14 13.7540 2.8577 -0.2021 20 1 14.0314 2.3185 -1.5577 21 1 14.5861 4.0655 0.0300 22 1 14.0814 1.8279 0.8166 23 6 7.4346 1.9655 1.2984 24 6 6.7305 0.7787 1.9648 25 6 3.2148 -1.3025 -0.8488 26 8 4.0418 -1.6607 -1.6535 27 8 2.0393 -0.7341 -1.1527 28 1 -0.3633 0.4747 0.9115 29 1 -0.3633 0.5520 -0.8668 30 1 -0.3633 -1.0266 -0.0446 31 1 3.1546 1.4141 -0.0446 32 1 1.6758 1.9668 -0.8669 33 1 1.7482 1.9397 0.9114 34 1 1.3583 -1.5387 1.5429 35 1 2.3090 -0.1015 2.0422 36 1 3.4718 -2.9735 2.1488 37 1 2.5447 -3.4251 0.6980 38 1 4.3219 -3.3507 0.6312 39 1 4.4410 0.0612 1.7031 40 1 8.7972 -1.1170 1.4192 41 1 8.0987 -1.5366 -0.1671 42 1 8.2776 0.7924 -0.9154 43 1 9.8651 0.2711 -0.3005 44 1 9.2007 3.0408 -0.5076 45 1 9.4574 3.5721 1.1718 46 1 12.1920 5.1800 -0.6990 47 1 6.8981 2.2443 0.3915 48 1 7.4514 2.8113 1.9859 49 1 5.6776 1.0159 2.1168 50 1 7.2026 0.5642 2.9235 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772444878.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:44 Heat of formation + Delta-G solvation = -110.211190 kcal Electronic energy + Delta-G solvation = -31529.463348 eV Core-core repulsion = 27363.607542 eV Total energy + Delta-G solvation = -4165.855807 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.78838 -41.19466 -39.19824 -38.87711 -36.64995 -36.00355 -34.52674 -34.33416 -32.66563 -31.69308 -29.80489 -28.47703 -28.02049 -27.20705 -25.20048 -24.66472 -24.02794 -22.76644 -22.47592 -21.05339 -20.13355 -19.31696 -18.52942 -18.11951 -17.89223 -17.11755 -16.93519 -16.63267 -16.35223 -16.00129 -15.97586 -15.45719 -15.41214 -15.28236 -15.09716 -14.74825 -14.49669 -14.36383 -14.10240 -13.74650 -13.58338 -13.48955 -13.37459 -13.11038 -13.06822 -12.97468 -12.76614 -12.72279 -12.60407 -12.54324 -12.37590 -12.32881 -12.19709 -12.09554 -11.75783 -11.53292 -11.48375 -11.32424 -10.89556 -10.63512 -10.25282 -9.66165 -9.08138 -8.22396 -6.32027 0.77861 1.41335 1.41901 1.53588 1.59157 2.00911 2.15878 2.39404 2.72883 2.83874 3.09878 3.10504 3.20598 3.48138 3.70381 3.88481 3.92362 4.02303 4.05245 4.12054 4.22090 4.40320 4.45823 4.58291 4.61284 4.63076 4.68647 4.69929 4.74998 4.79815 4.82549 4.90543 4.91758 4.92494 4.99828 5.14016 5.15942 5.18739 5.24471 5.31226 5.32252 5.45923 5.62207 5.76009 5.85956 6.01520 6.21491 6.40821 6.55979 6.83296 6.87263 7.37773 7.50373 8.88834 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020584 B = 0.002632 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.933266 B =10633.879579 C =11138.146469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.092 3.908 3 C -0.171 4.171 4 C -0.134 4.134 5 C 0.141 3.859 6 C -0.154 4.154 7 N -0.718 5.718 8 C 0.699 3.301 9 O -0.602 6.602 10 N -0.628 5.628 11 C 0.148 3.852 12 C 0.058 3.942 13 N -0.534 5.534 14 C 0.209 3.791 15 C -0.524 4.524 16 H 0.065 0.935 17 C 0.002 3.998 18 N -0.935 5.935 19 Si 0.968 3.032 20 H -0.277 1.277 21 H -0.281 1.281 22 H -0.262 1.262 23 C 0.036 3.964 24 C 0.127 3.873 25 C 0.461 3.539 26 O -0.479 6.479 27 O -0.362 6.362 28 H 0.117 0.883 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.041 0.959 32 H 0.064 0.936 33 H 0.121 0.879 34 H 0.138 0.862 35 H 0.141 0.859 36 H 0.098 0.902 37 H 0.082 0.918 38 H 0.054 0.946 39 H 0.415 0.585 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.001 0.999 43 H 0.079 0.921 44 H -0.046 1.046 45 H 0.014 0.986 46 H 0.264 0.736 47 H 0.012 0.988 48 H 0.094 0.906 49 H 0.112 0.888 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.076 -8.388 11.017 30.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.057 3.943 3 C -0.228 4.228 4 C -0.171 4.171 5 C 0.052 3.948 6 C -0.212 4.212 7 N -0.381 5.381 8 C 0.401 3.599 9 O -0.481 6.481 10 N -0.366 5.366 11 C 0.024 3.976 12 C -0.072 4.072 13 N -0.259 5.259 14 C 0.083 3.917 15 C -0.562 4.562 16 H 0.083 0.917 17 C -0.196 4.196 18 N -0.575 5.575 19 Si 0.792 3.208 20 H -0.203 1.203 21 H -0.207 1.207 22 H -0.186 1.186 23 C -0.093 4.093 24 C 0.004 3.996 25 C 0.300 3.700 26 O -0.362 6.362 27 O -0.280 6.280 28 H 0.135 0.865 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.060 0.940 32 H 0.083 0.917 33 H 0.140 0.860 34 H 0.156 0.844 35 H 0.159 0.841 36 H 0.117 0.883 37 H 0.101 0.899 38 H 0.073 0.927 39 H 0.257 0.743 40 H 0.102 0.898 41 H 0.097 0.903 42 H 0.019 0.981 43 H 0.097 0.903 44 H -0.028 1.028 45 H 0.032 0.968 46 H 0.073 0.927 47 H 0.031 0.969 48 H 0.112 0.888 49 H 0.130 0.870 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -26.440 -9.282 10.313 29.860 hybrid contribution 1.134 0.935 -1.523 2.117 sum -25.307 -8.347 8.790 28.060 Atomic orbital electron populations 1.21947 0.88294 1.04343 1.05039 1.23584 0.97711 0.91597 0.81434 1.22374 1.00652 0.94113 1.05616 1.23574 0.93312 1.02076 0.98143 1.21524 0.87218 0.96579 0.89526 1.22139 1.03698 0.91558 1.03800 1.45040 1.02441 1.35584 1.55020 1.16063 0.81182 0.83035 0.79648 1.90918 1.85294 1.26716 1.45155 1.47427 1.06148 1.30845 1.52154 1.21543 0.81249 0.95470 0.99356 1.22353 1.00553 0.92101 0.92156 1.62019 1.12195 1.09400 1.42282 1.19373 0.92799 0.88064 0.91446 1.21470 0.92737 0.98537 1.43441 0.91664 1.25894 1.03996 0.94768 0.94937 1.70079 1.36298 1.05044 1.46085 0.85405 0.78817 0.77907 0.78645 1.20283 1.20655 1.18616 1.22561 0.88918 0.98698 0.99140 1.21894 1.01448 0.82925 0.93293 1.24114 0.79360 0.73874 0.92664 1.90762 1.40472 1.46332 1.58633 1.87099 1.34600 1.62753 1.43517 0.86462 0.91755 0.90746 0.94024 0.91667 0.86018 0.84399 0.84145 0.88349 0.89939 0.92661 0.74319 0.89795 0.90338 0.98080 0.90256 1.02822 0.96751 0.92689 0.96946 0.88763 0.87021 0.88841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.69 8.91 71.98 0.64 -0.05 16 2 C 0.09 1.01 1.24 -10.26 -0.01 1.00 16 3 C -0.17 -1.76 8.80 71.98 0.63 -1.13 16 4 C -0.13 -0.86 5.52 31.64 0.17 -0.69 16 5 C 0.14 2.61 0.96 3.56 0.00 2.61 16 6 C -0.15 -2.86 8.34 71.98 0.60 -2.26 16 7 N -0.72 -14.39 5.06 -438.19 -2.22 -16.61 16 8 C 0.70 21.39 7.68 179.05 1.38 22.77 16 9 O -0.60 -23.78 11.85 15.62 0.19 -23.59 16 10 N -0.63 -18.70 3.00 -835.07 -2.51 -21.21 16 11 C 0.15 5.08 6.61 86.51 0.57 5.65 16 12 C 0.06 2.37 5.47 86.54 0.47 2.85 16 13 N -0.53 -22.49 4.62 -898.87 -4.15 -26.64 16 14 C 0.21 11.05 4.72 85.56 0.40 11.45 16 15 C -0.52 -29.50 8.41 25.60 0.22 -29.28 16 16 H 0.07 3.59 7.13 -2.91 -0.02 3.57 16 17 C 0.00 0.12 5.46 84.65 0.46 0.58 16 18 N -0.93 -56.25 13.29 21.45 0.28 -55.96 16 19 Si 0.97 44.43 29.54 68.60 2.03 46.46 16 20 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 21 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 22 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 23 C 0.04 1.16 5.62 86.38 0.49 1.64 16 24 C 0.13 2.92 6.59 86.35 0.57 3.49 16 25 C 0.46 13.40 7.11 71.44 0.51 13.91 16 26 O -0.48 -19.76 15.99 28.42 0.45 -19.31 16 27 O -0.36 -8.52 10.48 -50.17 -0.53 -9.05 16 28 H 0.12 -0.18 8.14 -2.38 -0.02 -0.19 16 29 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.04 0.63 8.03 -2.39 -0.02 0.61 16 32 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 33 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16 34 H 0.14 0.17 7.60 -2.39 -0.02 0.15 16 35 H 0.14 -0.05 7.43 -2.39 -0.02 -0.07 16 36 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 37 H 0.08 1.21 8.14 -2.39 -0.02 1.20 16 38 H 0.05 1.58 5.91 -2.39 -0.01 1.57 16 39 H 0.42 5.09 5.70 -92.71 -0.53 4.57 16 40 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 41 H 0.08 2.89 7.09 -2.39 -0.02 2.87 16 42 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 43 H 0.08 3.50 6.67 -2.39 -0.02 3.48 16 44 H -0.05 -2.71 8.12 -2.39 -0.02 -2.73 16 45 H 0.01 0.80 7.97 -2.39 -0.02 0.78 16 46 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 47 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 48 H 0.09 2.78 7.99 -2.38 -0.02 2.76 16 49 H 0.11 1.53 5.63 -2.39 -0.01 1.52 16 50 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -86.50 389.73 1.07 -85.44 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: 0.41 Total: 7.94 kcal Atomic # 6 Polarization: 25.43 SS G_CDS: 7.11 Total: 32.53 kcal Atomic # 7 Polarization: -111.83 SS G_CDS: -8.59 Total: -120.42 kcal Atomic # 8 Polarization: -52.06 SS G_CDS: 0.11 Total: -51.95 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -86.50 1.07 -85.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772444878.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.776 kcal (2) G-P(sol) polarization free energy of solvation -86.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds