Wall clock time and date at job start Sat Apr 11 2020 05:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46908 * 2 1 4 4 C 1.50696 * 109.47163 * 120.00313 * 2 1 3 5 5 H 1.07993 * 120.00256 * 125.48182 * 4 2 1 6 6 C 1.37876 * 119.99753 * 305.47132 * 4 2 1 7 7 N 1.31514 * 119.99886 * 150.42467 * 6 4 2 8 8 Si 1.86802 * 120.00662 * 330.42835 * 6 4 2 9 9 H 1.48495 * 109.47648 * 179.97438 * 8 6 4 10 10 H 1.48501 * 109.46634 * 299.99865 * 8 6 4 11 11 H 1.48503 * 109.46990 * 59.99549 * 8 6 4 12 12 C 1.52996 * 109.47025 * 240.00336 * 2 1 3 13 13 N 1.46501 * 109.47307 * 59.99706 * 12 2 1 14 14 C 1.34777 * 120.00032 * 180.02562 * 13 12 2 15 15 O 1.21349 * 119.99987 * 0.02562 * 14 13 12 16 16 C 1.49448 * 120.00045 * 180.02562 * 14 13 12 17 17 O 1.21347 * 120.00295 * 6.05156 * 16 14 13 18 18 N 1.34782 * 120.00268 * 186.05885 * 16 14 13 19 19 C 1.47127 * 121.01604 * 6.00811 * 18 16 14 20 20 C 1.52647 * 108.49833 * 231.80913 * 19 18 16 21 21 N 1.47151 * 109.74144 * 305.81499 * 20 19 18 22 22 C 1.47174 * 109.76649 * 185.98790 * 21 20 19 23 23 C 1.52963 * 109.67625 * 178.85345 * 22 21 20 24 24 O 1.43094 * 108.91478 * 57.35639 * 23 22 21 25 25 C 1.42884 * 113.34008 * 300.40711 * 24 23 22 26 26 C 1.46924 * 111.29632 * 62.62328 * 21 20 19 27 27 H 1.09004 * 109.59462 * 58.42487 * 26 21 20 28 28 C 1.46942 * 121.01783 * 186.29527 * 18 16 14 29 29 H 1.09002 * 109.47197 * 293.90386 * 1 2 3 30 30 H 1.09000 * 109.47470 * 53.90535 * 1 2 3 31 31 H 1.09004 * 109.47314 * 173.90785 * 1 2 3 32 32 H 1.08994 * 109.47278 * 182.65146 * 3 2 1 33 33 H 1.09007 * 109.47624 * 302.65384 * 3 2 1 34 34 H 1.09002 * 109.47468 * 62.65092 * 3 2 1 35 35 H 0.97001 * 120.00270 * 354.98337 * 7 6 4 36 36 H 1.09000 * 109.47053 * 179.97438 * 12 2 1 37 37 H 1.09001 * 109.47506 * 299.99871 * 12 2 1 38 38 H 0.97000 * 119.99793 * 0.02562 * 13 12 2 39 39 H 1.09004 * 109.70747 * 351.55653 * 19 18 16 40 40 H 1.08996 * 109.70665 * 112.17534 * 19 18 16 41 41 H 1.08994 * 109.51087 * 185.65568 * 20 19 18 42 42 H 1.09004 * 109.28445 * 65.82106 * 20 19 18 43 43 H 1.09000 * 109.43940 * 298.91475 * 22 21 20 44 44 H 1.09008 * 109.43868 * 58.79235 * 22 21 20 45 45 H 1.08996 * 109.56704 * 177.18764 * 23 22 21 46 46 H 1.09004 * 109.56602 * 297.52693 * 23 22 21 47 47 H 1.09001 * 109.43188 * 298.91180 * 25 24 23 48 48 H 1.08994 * 109.42805 * 179.05919 * 25 24 23 49 49 H 1.08998 * 109.56021 * 248.42463 * 28 18 16 50 50 H 1.08997 * 109.56767 * 8.76888 * 28 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.7241 -1.5341 1.1338 6 6 1.6088 -0.3088 2.4795 7 7 1.5321 -1.1819 3.4600 8 14 1.1438 1.4754 2.7793 9 1 0.7247 1.6470 4.1935 10 1 2.3145 2.3455 2.5005 11 1 0.0222 1.8521 1.8819 12 6 2.0400 -0.7212 -1.2493 13 7 1.5516 -0.0305 -2.4454 14 6 1.8767 -0.4913 -3.6695 15 8 2.5736 -1.4784 -3.7809 16 6 1.3790 0.2136 -4.8898 17 8 0.7753 1.2607 -4.7819 18 7 1.6004 -0.3138 -6.1102 19 6 2.2124 -1.6432 -6.2619 20 6 3.3941 -1.5257 -7.2210 21 7 2.9516 -0.9094 -8.4818 22 6 4.0532 -0.9261 -9.4576 23 6 3.5824 -0.3109 -10.7766 24 8 3.1135 1.0178 -10.5274 25 6 2.0280 1.0704 -9.5997 26 6 2.4601 0.4580 -8.2638 27 1 3.2485 1.0625 -7.8151 28 6 1.2437 0.4238 -7.3299 29 1 -0.3634 0.4164 0.9395 30 1 -0.3634 0.6054 -0.8304 31 1 -0.3634 -1.0219 -0.1091 32 1 3.1288 1.4429 -0.0475 33 1 1.6383 1.9700 -0.8653 34 1 1.7159 1.9425 0.9128 35 1 1.7030 -2.1210 3.2877 36 1 3.1300 -0.7208 -1.2495 37 1 1.6767 -1.7488 -1.2494 38 1 0.9942 0.7583 -2.3564 39 1 2.5613 -2.0000 -5.2928 40 1 1.4803 -2.3405 -6.6691 41 1 3.7981 -2.5174 -7.4241 42 1 4.1668 -0.9060 -6.7660 43 1 4.8921 -0.3497 -9.0676 44 1 4.3697 -1.9549 -9.6298 45 1 4.4132 -0.2786 -11.4814 46 1 2.7730 -0.9118 -11.1913 47 1 1.1824 0.5102 -9.9988 48 1 1.7336 2.1083 -9.4446 49 1 0.4141 -0.0764 -7.8294 50 1 0.9548 1.4420 -7.0694 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332735556.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:18 Heat of formation + Delta-G solvation = -95.863558 kcal Electronic energy + Delta-G solvation = -30830.135123 eV Core-core repulsion = 26664.901476 eV Total energy + Delta-G solvation = -4165.233647 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.22999 -40.95793 -39.76001 -38.58769 -38.03029 -35.72467 -35.02158 -33.50382 -33.34609 -31.35578 -28.78801 -28.04116 -27.52860 -27.09657 -26.52751 -24.70314 -24.24703 -22.67730 -21.63339 -21.18628 -20.73903 -19.17528 -18.51822 -18.28198 -17.40425 -17.34325 -17.12366 -16.93274 -16.62074 -16.27784 -16.14221 -15.92607 -15.81501 -15.63124 -15.18825 -15.14747 -14.82375 -14.52031 -14.47697 -14.17409 -14.00593 -13.65279 -13.63148 -13.11561 -13.07311 -13.02868 -12.72488 -12.50340 -12.42261 -12.17866 -12.10789 -12.06460 -11.89891 -11.73102 -11.64465 -11.01798 -10.90777 -10.70691 -10.33296 -10.28132 -10.18037 -10.01139 -9.53317 -8.75771 -6.30378 0.20744 1.15490 1.45707 1.51377 1.74128 2.00233 2.30840 2.48521 2.65591 2.86561 2.98233 3.18530 3.61909 3.66381 3.83002 3.94238 4.01736 4.04307 4.16173 4.23139 4.25305 4.30535 4.37307 4.39813 4.50025 4.59619 4.65005 4.65673 4.71699 4.74022 4.78730 4.81164 4.84447 4.88291 4.88536 4.98384 5.04109 5.07938 5.16019 5.39113 5.48461 5.69638 5.71438 5.79877 5.90326 6.04485 6.09326 6.12511 6.14496 6.59310 6.60439 6.85763 7.40036 8.60084 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.030112 B = 0.002286 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.629508 B =12244.618450 C =12694.228627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.030 3.970 3 C -0.151 4.151 4 C -0.610 4.610 5 H 0.024 0.976 6 C -0.001 4.001 7 N -0.922 5.922 8 Si 1.081 2.919 9 H -0.311 1.311 10 H -0.268 1.268 11 H -0.241 1.241 12 C 0.154 3.846 13 N -0.678 5.678 14 C 0.503 3.497 15 O -0.531 6.531 16 C 0.512 3.488 17 O -0.539 6.539 18 N -0.579 5.579 19 C 0.055 3.945 20 C 0.048 3.952 21 N -0.529 5.529 22 C 0.014 3.986 23 C 0.060 3.940 24 O -0.401 6.401 25 C 0.072 3.928 26 C 0.039 3.961 27 H 0.036 0.964 28 C 0.118 3.882 29 H 0.046 0.954 30 H 0.058 0.942 31 H 0.038 0.962 32 H 0.050 0.950 33 H 0.062 0.938 34 H 0.039 0.961 35 H 0.258 0.742 36 H 0.056 0.944 37 H 0.055 0.945 38 H 0.416 0.584 39 H 0.148 0.852 40 H 0.085 0.915 41 H 0.110 0.890 42 H 0.024 0.976 43 H 0.032 0.968 44 H 0.108 0.892 45 H 0.117 0.883 46 H 0.070 0.930 47 H 0.076 0.924 48 H 0.113 0.887 49 H 0.098 0.902 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.744 2.679 -29.891 30.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.029 3.971 3 C -0.208 4.208 4 C -0.647 4.647 5 H 0.043 0.957 6 C -0.203 4.203 7 N -0.555 5.555 8 Si 0.908 3.092 9 H -0.241 1.241 10 H -0.195 1.195 11 H -0.166 1.166 12 C 0.031 3.969 13 N -0.329 5.329 14 C 0.285 3.715 15 O -0.411 6.411 16 C 0.295 3.705 17 O -0.417 6.417 18 N -0.312 5.312 19 C -0.066 4.066 20 C -0.081 4.081 21 N -0.255 5.255 22 C -0.113 4.113 23 C -0.016 4.016 24 O -0.319 6.319 25 C -0.005 4.005 26 C -0.071 4.071 27 H 0.054 0.946 28 C -0.004 4.004 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.057 0.943 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.254 0.746 39 H 0.164 0.836 40 H 0.104 0.896 41 H 0.128 0.872 42 H 0.043 0.957 43 H 0.051 0.949 44 H 0.126 0.874 45 H 0.135 0.865 46 H 0.088 0.912 47 H 0.094 0.906 48 H 0.131 0.869 49 H 0.116 0.884 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.127 3.456 -29.010 29.215 hybrid contribution 1.240 -1.070 -0.013 1.638 sum 1.366 2.386 -29.023 29.153 Atomic orbital electron populations 1.22170 0.96559 1.00433 1.00751 1.18624 0.93378 0.93109 0.91998 1.22305 1.01114 0.97236 1.00145 1.21764 1.31384 1.18979 0.92620 0.95723 1.26900 0.93108 1.07615 0.92631 1.70969 1.43765 1.03515 1.37247 0.83841 0.78424 0.72491 0.74460 1.24054 1.19516 1.16601 1.21344 0.98042 0.95358 0.82142 1.46054 1.50658 1.31472 1.04756 1.20293 0.81494 0.84576 0.85163 1.90305 1.39283 1.26798 1.84759 1.19963 0.80547 0.85154 0.84857 1.90738 1.40692 1.23793 1.86445 1.48031 1.59235 1.19551 1.04391 1.23273 0.95720 0.82283 1.05315 1.22402 0.95787 1.01019 0.88847 1.62636 1.34866 1.17714 1.10277 1.22904 0.91931 1.03131 0.93361 1.22863 1.00535 0.82676 0.95570 1.88023 1.52009 1.28871 1.63032 1.22687 0.89415 1.02509 0.85892 1.22660 0.96864 0.90148 0.97416 0.94591 1.21895 0.96913 0.98634 0.82926 0.93512 0.92364 0.94236 0.93104 0.91900 0.94263 0.93284 0.92534 0.92676 0.74560 0.83606 0.89629 0.87157 0.95744 0.94932 0.87428 0.86543 0.91185 0.90620 0.86944 0.88417 0.88446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.60 7.89 71.98 0.57 -5.03 16 2 C 0.03 1.29 0.50 -52.93 -0.03 1.26 16 3 C -0.15 -5.77 7.71 71.98 0.56 -5.21 16 4 C -0.61 -32.58 8.41 25.60 0.22 -32.36 16 5 H 0.02 1.46 7.99 -2.91 -0.02 1.43 16 6 C 0.00 -0.06 5.05 84.65 0.43 0.36 16 7 N -0.92 -55.78 13.70 21.45 0.29 -55.49 16 8 Si 1.08 48.75 23.47 68.60 1.61 50.36 16 9 H -0.31 -14.66 7.11 99.48 0.71 -13.95 16 10 H -0.27 -11.24 6.75 99.48 0.67 -10.57 16 11 H -0.24 -9.47 5.76 99.48 0.57 -8.90 16 12 C 0.15 5.92 4.51 86.38 0.39 6.31 16 13 N -0.68 -21.80 5.00 -464.41 -2.32 -24.13 16 14 C 0.50 15.61 7.79 87.27 0.68 16.28 16 15 O -0.53 -17.67 13.11 -3.24 -0.04 -17.71 16 16 C 0.51 14.32 7.76 87.27 0.68 15.00 16 17 O -0.54 -16.61 15.99 -3.24 -0.05 -16.66 16 18 N -0.58 -13.18 3.01 -820.59 -2.47 -15.65 16 19 C 0.05 1.12 6.43 86.14 0.55 1.67 16 20 C 0.05 0.82 5.51 86.14 0.47 1.30 16 21 N -0.53 -8.28 4.71 -869.15 -4.10 -12.38 16 22 C 0.01 0.18 5.56 86.24 0.48 0.66 16 23 C 0.06 0.67 7.01 71.97 0.50 1.18 16 24 O -0.40 -6.52 10.85 -148.98 -1.62 -8.14 16 25 C 0.07 0.97 6.19 72.04 0.45 1.42 16 26 C 0.04 0.65 2.54 45.10 0.11 0.76 16 27 H 0.04 0.75 8.14 -2.38 -0.02 0.73 16 28 C 0.12 2.11 5.79 86.43 0.50 2.61 16 29 H 0.05 1.95 4.48 -2.39 -0.01 1.94 16 30 H 0.06 1.88 7.04 -2.39 -0.02 1.87 16 31 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 32 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.06 1.97 6.94 -2.38 -0.02 1.96 16 34 H 0.04 1.55 2.33 -2.39 -0.01 1.54 16 35 H 0.26 15.80 8.73 -92.71 -0.81 14.99 16 36 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 38 H 0.42 12.45 5.71 -92.71 -0.53 11.92 16 39 H 0.15 3.66 3.82 -76.01 -0.29 3.37 16 40 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.11 1.48 8.07 -2.39 -0.02 1.46 16 42 H 0.02 0.50 8.14 -2.38 -0.02 0.49 16 43 H 0.03 0.49 8.14 -2.39 -0.02 0.47 16 44 H 0.11 0.95 8.10 -2.38 -0.02 0.93 16 45 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.08 0.84 8.12 -2.39 -0.02 0.82 16 48 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 49 H 0.10 1.45 8.11 -2.39 -0.02 1.43 16 50 H 0.10 1.81 7.11 -2.39 -0.02 1.80 16 Total: -1.00 -65.45 374.22 -2.20 -67.65 By element: Atomic # 1 Polarization: 26.00 SS G_CDS: -0.06 Total: 25.94 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: 6.56 Total: 6.21 kcal Atomic # 7 Polarization: -99.05 SS G_CDS: -8.60 Total: -107.65 kcal Atomic # 8 Polarization: -40.79 SS G_CDS: -1.71 Total: -42.50 kcal Atomic # 14 Polarization: 48.75 SS G_CDS: 1.61 Total: 50.36 kcal Total: -65.45 -2.20 -67.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332735556.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.216 kcal (2) G-P(sol) polarization free energy of solvation -65.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds