Wall clock time and date at job start Sat Apr 11 2020 05:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47469 * 2 1 4 4 H 1.08993 * 109.66804 * 178.48900 * 3 2 1 5 5 C 1.50438 * 109.56413 * 58.19150 * 3 2 1 6 6 O 1.21277 * 118.49163 * 47.49665 * 5 3 2 7 7 N 1.33384 * 123.02514 * 227.46960 * 5 3 2 8 8 C 1.46494 * 117.71029 * 184.34001 * 7 5 3 9 9 C 1.53010 * 109.46917 * 90.00272 * 8 7 5 10 10 C 1.45646 * 124.58622 * 4.32325 * 7 5 3 11 11 C 1.53472 * 110.74096 * 337.97762 * 10 7 5 12 12 N 1.47043 * 109.56744 * 298.78689 * 3 2 1 13 13 C 1.34780 * 121.35710 * 342.53622 * 12 3 2 14 14 O 1.21347 * 119.99334 * 4.09360 * 13 12 3 15 15 C 1.49450 * 120.00310 * 184.09454 * 13 12 3 16 16 O 1.21341 * 120.00007 * 353.87521 * 15 13 12 17 17 N 1.34774 * 119.99676 * 173.87393 * 15 13 12 18 18 C 1.46504 * 119.99640 * 180.02562 * 17 15 13 19 19 C 1.53006 * 109.46893 * 179.97438 * 18 17 15 20 20 C 1.52998 * 109.46859 * 179.97438 * 19 18 17 21 21 C 1.50705 * 109.47045 * 179.97438 * 20 19 18 22 22 H 1.07997 * 119.99691 * 0.02562 * 21 20 19 23 23 C 1.37880 * 120.00037 * 179.97438 * 21 20 19 24 24 N 1.31506 * 119.99916 * 179.97438 * 23 21 20 25 25 Si 1.86793 * 119.99846 * 0.02562 * 23 21 20 26 26 H 1.48510 * 109.47402 * 89.99900 * 25 23 21 27 27 H 1.48502 * 109.47253 * 209.99398 * 25 23 21 28 28 H 1.48496 * 109.47591 * 329.99673 * 25 23 21 29 29 H 1.08998 * 109.47127 * 293.73111 * 1 2 3 30 30 H 1.09005 * 109.46877 * 53.73354 * 1 2 3 31 31 H 1.09003 * 109.46967 * 173.72806 * 1 2 3 32 32 H 1.09000 * 109.47652 * 240.00059 * 2 1 3 33 33 H 1.08997 * 109.46990 * 120.00164 * 2 1 3 34 34 H 1.08997 * 109.47457 * 209.99978 * 8 7 5 35 35 H 1.08996 * 109.47169 * 330.00690 * 8 7 5 36 36 H 1.08997 * 109.46817 * 300.00098 * 9 8 7 37 37 H 1.08996 * 109.46860 * 60.00228 * 9 8 7 38 38 H 1.08998 * 109.46870 * 180.02562 * 9 8 7 39 39 H 1.09004 * 109.22453 * 98.42921 * 10 7 5 40 40 H 1.09003 * 109.22286 * 217.81074 * 10 7 5 41 41 H 1.08996 * 109.84865 * 287.31735 * 11 10 7 42 42 H 1.08998 * 109.84134 * 166.50938 * 11 10 7 43 43 H 0.96999 * 120.00342 * 359.72169 * 17 15 13 44 44 H 1.08999 * 109.47191 * 299.99436 * 18 17 15 45 45 H 1.08997 * 109.47328 * 59.99840 * 18 17 15 46 46 H 1.09000 * 109.47264 * 299.99623 * 19 18 17 47 47 H 1.08997 * 109.47256 * 59.99806 * 19 18 17 48 48 H 1.08999 * 109.47676 * 299.99722 * 20 19 18 49 49 H 1.09005 * 109.46775 * 60.00448 * 20 19 18 50 50 H 0.96997 * 120.00443 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1296 1.4463 0.0271 5 6 1.5036 2.1665 1.2046 6 8 1.5808 1.6249 2.2870 7 7 0.9474 3.3770 1.1372 8 6 0.5517 4.0158 2.3948 9 6 1.7193 4.8438 2.9355 10 6 0.7061 4.1083 -0.0990 11 6 1.6249 3.6011 -1.2187 12 7 1.5752 2.1292 -1.2143 13 6 1.1271 1.4396 -2.2821 14 8 1.0314 0.2311 -2.2271 15 6 0.7480 2.1631 -3.5336 16 8 0.7372 3.3763 -3.5534 17 7 0.4183 1.4680 -4.6402 18 6 0.0473 2.1773 -5.8672 19 6 -0.2779 1.1620 -6.9647 20 6 -0.6660 1.9027 -8.2459 21 6 -0.9856 0.9027 -9.3271 22 1 -0.9191 -0.1553 -9.1208 23 6 -1.3641 1.3385 -10.5793 24 7 -1.6425 0.4659 -11.5228 25 14 -1.4799 3.1685 -10.9357 26 1 -0.1697 3.6599 -11.4332 27 1 -2.5218 3.4070 -11.9666 28 1 -1.8402 3.8935 -9.6909 29 1 -0.3633 0.4136 0.9408 30 1 -0.3633 0.6079 -0.8286 31 1 -0.3633 -1.0215 -0.1123 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 -0.3043 4.6670 2.2180 35 1 0.2818 3.2502 3.1221 36 1 2.5753 4.1926 3.1123 37 1 1.9892 5.6095 2.2082 38 1 1.4251 5.3188 3.8714 39 1 -0.3338 3.9752 -0.3976 40 1 0.8985 5.1682 0.0676 41 1 2.6467 3.9351 -1.0388 42 1 1.2783 3.9780 -2.1809 43 1 0.4309 0.4982 -4.6255 44 1 -0.8272 2.7996 -5.6769 45 1 0.8776 2.8060 -6.1887 46 1 0.5968 0.5400 -7.1550 47 1 -1.1081 0.5330 -6.6434 48 1 -1.5408 2.5244 -8.0555 49 1 0.1641 2.5319 -8.5674 50 1 -1.9084 0.7724 -12.4039 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343152884.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:27 Heat of formation + Delta-G solvation = -66.451274 kcal Electronic energy + Delta-G solvation = -30521.085681 eV Core-core repulsion = 26357.127446 eV Total energy + Delta-G solvation = -4163.958235 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.89792 -40.38215 -38.96475 -37.14943 -36.24827 -35.62504 -33.45502 -33.26144 -31.57542 -31.52880 -29.49009 -28.11670 -27.40181 -24.87689 -24.60201 -23.41926 -22.54233 -21.88674 -21.00590 -20.14514 -19.03592 -18.19424 -17.50971 -17.05371 -16.81782 -16.49801 -16.30979 -15.99497 -15.74274 -15.45059 -15.20699 -14.70637 -14.48699 -14.20981 -14.16992 -13.89685 -13.77871 -13.45371 -13.12312 -13.05561 -12.79298 -12.69163 -12.47210 -12.22042 -12.19402 -12.04701 -11.78294 -11.66865 -11.44977 -11.21466 -11.20213 -10.97953 -10.57069 -10.40336 -10.18103 -10.00088 -9.80700 -9.31122 -9.29443 -9.24634 -9.15413 -8.97311 -8.60761 -6.10808 -4.10206 1.14771 1.89418 2.21991 2.48912 2.94301 3.22114 3.26480 3.34622 3.36901 3.92079 4.12751 4.32763 4.39150 4.49836 4.60692 4.66766 4.70694 4.78313 4.88920 4.97969 5.15616 5.22468 5.22592 5.31441 5.34622 5.41486 5.46133 5.46838 5.50084 5.54634 5.64999 5.73476 5.82693 5.91860 5.98215 6.11804 6.13597 6.26448 6.30008 6.47827 6.62575 6.66848 6.97788 7.06689 7.13712 7.26780 7.48923 7.69649 7.72167 7.81237 8.44930 8.93112 9.50657 11.02354 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023376 B = 0.002130 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.542361 B =13140.280090 C =14003.366128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.123 4.123 3 C 0.134 3.866 4 H 0.107 0.893 5 C 0.517 3.483 6 O -0.539 6.539 7 N -0.603 5.603 8 C 0.099 3.901 9 C -0.165 4.165 10 C 0.101 3.899 11 C 0.035 3.965 12 N -0.585 5.585 13 C 0.513 3.487 14 O -0.498 6.498 15 C 0.506 3.494 16 O -0.518 6.518 17 N -0.683 5.683 18 C 0.110 3.890 19 C -0.116 4.116 20 C -0.010 4.010 21 C -0.524 4.524 22 H 0.072 0.928 23 C 0.066 3.934 24 N -0.901 5.901 25 Si 0.880 3.120 26 H -0.277 1.277 27 H -0.288 1.288 28 H -0.265 1.265 29 H 0.040 0.960 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.117 0.883 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.058 0.942 37 H 0.056 0.944 38 H 0.067 0.933 39 H 0.071 0.929 40 H 0.090 0.910 41 H 0.077 0.923 42 H 0.180 0.820 43 H 0.414 0.586 44 H 0.073 0.927 45 H 0.073 0.927 46 H 0.064 0.936 47 H 0.064 0.936 48 H 0.019 0.981 49 H 0.015 0.985 50 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.399 8.409 27.541 29.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.160 4.160 3 C 0.028 3.972 4 H 0.125 0.875 5 C 0.304 3.696 6 O -0.416 6.416 7 N -0.336 5.336 8 C -0.024 4.024 9 C -0.223 4.223 10 C -0.023 4.023 11 C -0.086 4.086 12 N -0.321 5.321 13 C 0.296 3.704 14 O -0.372 6.372 15 C 0.287 3.713 16 O -0.398 6.398 17 N -0.334 5.334 18 C -0.012 4.012 19 C -0.154 4.154 20 C -0.048 4.048 21 C -0.562 4.562 22 H 0.091 0.909 23 C -0.135 4.135 24 N -0.540 5.540 25 Si 0.708 3.292 26 H -0.202 1.202 27 H -0.214 1.214 28 H -0.189 1.189 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.135 0.865 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.106 0.894 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.108 0.892 41 H 0.095 0.905 42 H 0.195 0.805 43 H 0.251 0.749 44 H 0.091 0.909 45 H 0.091 0.909 46 H 0.082 0.918 47 H 0.083 0.917 48 H 0.038 0.962 49 H 0.033 0.967 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.295 8.278 27.875 29.980 hybrid contribution -0.015 0.701 -0.220 0.735 sum 7.280 8.979 27.655 29.974 Atomic orbital electron populations 1.21800 0.95051 1.02310 1.00344 1.22114 0.97529 0.91662 1.04728 1.21678 1.00010 0.94669 0.80803 0.87506 1.20220 0.77741 0.80916 0.90762 1.90723 1.56934 1.65235 1.28667 1.47404 1.60730 1.17417 1.08017 1.21545 0.97298 0.97212 0.86311 1.22091 0.99083 1.00015 1.01148 1.21914 1.00438 0.96748 0.83154 1.23850 1.01004 0.78213 1.05543 1.48004 1.62496 1.07936 1.13694 1.20088 0.78577 0.87363 0.84330 1.90754 1.50983 1.13405 1.82107 1.20085 0.78905 0.87461 0.84864 1.90231 1.53572 1.13516 1.82450 1.46058 1.64681 1.11813 1.10818 1.21914 1.00812 0.96177 0.82317 1.21752 1.01582 0.97441 0.94611 1.19499 0.96312 0.96529 0.92435 1.21078 1.46216 0.94327 0.94579 0.90938 1.25037 0.94620 0.97694 0.96164 1.69904 1.46539 1.33980 1.03551 0.86770 0.78077 0.86009 0.78372 1.20245 1.21361 1.18921 0.94104 0.92775 0.92205 0.86510 0.90936 0.90427 0.89385 0.92312 0.92502 0.91431 0.91034 0.89206 0.90513 0.80485 0.74896 0.90862 0.90869 0.91767 0.91735 0.96239 0.96675 0.92641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 8.47 37.16 0.31 -1.26 16 2 C -0.12 -1.30 4.91 -26.73 -0.13 -1.43 16 3 C 0.13 1.31 3.38 -68.91 -0.23 1.08 16 4 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 5 C 0.52 5.51 5.89 -11.73 -0.07 5.44 16 6 O -0.54 -7.25 15.52 5.56 0.09 -7.16 16 7 N -0.60 -5.10 2.80 -174.59 -0.49 -5.59 16 8 C 0.10 0.71 5.92 -4.04 -0.02 0.68 16 9 C -0.17 -1.00 10.23 37.16 0.38 -0.62 16 10 C 0.10 0.68 6.51 -4.26 -0.03 0.65 16 11 C 0.03 0.27 6.41 -3.38 -0.02 0.25 16 12 N -0.59 -5.56 2.77 -166.76 -0.46 -6.02 16 13 C 0.51 5.67 6.38 -11.58 -0.07 5.60 16 14 O -0.50 -6.05 10.90 5.50 0.06 -5.99 16 15 C 0.51 6.02 7.82 -11.59 -0.09 5.93 16 16 O -0.52 -6.57 13.07 5.50 0.07 -6.50 16 17 N -0.68 -8.32 5.55 -60.73 -0.34 -8.66 16 18 C 0.11 1.55 5.67 -4.04 -0.02 1.52 16 19 C -0.12 -1.98 5.27 -26.73 -0.14 -2.12 16 20 C -0.01 -0.22 4.04 -27.88 -0.11 -0.33 16 21 C -0.52 -14.27 9.66 -34.44 -0.33 -14.60 16 22 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 23 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 24 N -0.90 -27.14 13.96 55.43 0.77 -26.37 16 25 Si 0.88 20.96 27.47 -169.99 -4.67 16.29 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 27 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 28 H -0.26 -5.99 6.54 56.52 0.37 -5.62 16 29 H 0.04 0.49 7.34 -51.93 -0.38 0.11 16 30 H 0.05 0.66 5.35 -51.93 -0.28 0.38 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.12 1.31 5.65 -52.55 -0.30 1.01 16 33 H 0.07 0.76 7.93 -51.93 -0.41 0.35 16 34 H 0.08 0.41 8.01 -51.93 -0.42 -0.01 16 35 H 0.09 0.78 7.10 -51.93 -0.37 0.41 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.09 0.40 8.07 -51.93 -0.42 -0.02 16 41 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.18 1.58 3.79 -56.71 -0.22 1.37 16 43 H 0.41 4.65 7.96 -40.82 -0.32 4.33 16 44 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 45 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 47 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 48 H 0.02 0.43 7.20 -51.93 -0.37 0.05 16 49 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 50 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 390.64 15.07 5.89 5.89 Total: -1.00 -31.83 390.64 -7.88 -39.70 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -8.11 Total: 1.85 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: -0.68 Total: 2.55 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: -0.52 Total: -46.63 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: 0.22 Total: -19.65 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.67 Total: 16.29 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.83 -7.88 -39.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343152884.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.748 kcal (2) G-P(sol) polarization free energy of solvation -31.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds