Wall clock time and date at job start Sat Apr 11 2020 05:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.46660 * 2 1 4 4 H 1.08999 * 109.47473 * 305.00074 * 3 2 1 5 5 C 1.52998 * 109.47032 * 65.00432 * 3 2 1 6 6 C 1.50703 * 109.46826 * 184.99981 * 3 2 1 7 7 O 1.21279 * 120.00458 * 274.68581 * 6 3 2 8 8 N 1.34779 * 119.99747 * 94.68931 * 6 3 2 9 9 C 1.46931 * 120.63138 * 354.57200 * 8 6 3 10 10 C 1.53192 * 108.77289 * 233.58634 * 9 8 6 11 11 C 1.53031 * 109.31604 * 305.36358 * 10 9 8 12 12 C 1.53042 * 109.53905 * 61.36842 * 11 10 9 13 13 H 1.09007 * 109.49606 * 58.61472 * 12 11 10 14 14 C 1.50694 * 109.49998 * 178.68338 * 12 11 10 15 15 O 1.21285 * 120.00008 * 120.00284 * 14 12 11 16 16 N 1.34775 * 120.00211 * 299.99733 * 14 12 11 17 17 C 1.46501 * 120.00421 * 180.02562 * 16 14 12 18 18 C 1.50699 * 109.47161 * 180.02562 * 17 16 14 19 19 O 1.21286 * 120.00251 * 0.02562 * 18 17 16 20 20 N 1.34777 * 120.00009 * 179.97438 * 18 17 16 21 21 C 1.37095 * 120.00354 * 179.97438 * 20 18 17 22 22 H 1.08003 * 119.99923 * 0.02562 * 21 20 18 23 23 C 1.38948 * 120.00387 * 180.02562 * 21 20 18 24 24 N 1.31415 * 119.99890 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00387 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46878 * 269.99879 * 25 23 21 27 27 H 1.48496 * 109.46996 * 29.99315 * 25 23 21 28 28 H 1.48501 * 109.47437 * 149.99675 * 25 23 21 29 29 C 1.46928 * 120.62850 * 174.55223 * 8 6 3 30 30 H 1.09002 * 109.47114 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47022 * 299.99654 * 1 2 3 32 32 H 1.08997 * 109.47343 * 59.99994 * 1 2 3 33 33 H 1.09002 * 109.47521 * 240.00513 * 2 1 3 34 34 H 1.08997 * 109.47343 * 120.00006 * 2 1 3 35 35 H 1.09004 * 109.47205 * 64.88704 * 5 3 2 36 36 H 1.09002 * 109.46639 * 184.88101 * 5 3 2 37 37 H 1.09000 * 109.46744 * 304.88305 * 5 3 2 38 38 H 1.09000 * 109.58433 * 113.79945 * 9 8 6 39 39 H 1.08998 * 109.58663 * 353.37444 * 9 8 6 40 40 H 1.09001 * 109.49225 * 185.40984 * 10 9 8 41 41 H 1.09000 * 109.52206 * 65.33587 * 10 9 8 42 42 H 1.08996 * 109.46300 * 301.34947 * 11 10 9 43 43 H 1.09005 * 109.45020 * 181.38270 * 11 10 9 44 44 H 0.97008 * 119.99710 * 0.02562 * 16 14 12 45 45 H 1.08996 * 109.47159 * 59.99775 * 17 16 14 46 46 H 1.09004 * 109.46778 * 300.00021 * 17 16 14 47 47 H 0.97008 * 119.99698 * 0.02562 * 20 18 17 48 48 H 0.97005 * 120.00078 * 0.02562 * 24 23 21 49 49 H 1.08996 * 109.58761 * 6.62987 * 29 8 6 50 50 H 1.08997 * 109.58467 * 246.19438 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9817 -0.8418 5 6 1.6352 2.1266 1.3074 6 6 3.5418 1.4445 -0.1238 7 8 4.2322 1.3290 0.8666 8 7 4.1179 1.5745 -1.3353 9 6 3.2991 1.5961 -2.5552 10 6 3.8269 0.5315 -3.5221 11 6 5.3203 0.7626 -3.7634 12 6 6.0787 0.6319 -2.4406 13 1 5.9079 -0.3590 -2.0196 14 6 7.5528 0.8276 -2.6845 15 8 8.1453 1.7279 -2.1282 16 7 8.2130 0.0021 -3.5206 17 6 9.6462 0.1919 -3.7573 18 6 10.1385 -0.8539 -4.7243 19 8 9.3679 -1.6765 -5.1720 20 7 11.4349 -0.8744 -5.0923 21 6 11.8829 -1.8261 -5.9716 22 1 11.1969 -2.5592 -6.3697 23 6 13.2195 -1.8476 -6.3506 24 7 14.0542 -0.9553 -5.8666 25 14 13.8299 -3.1439 -7.5492 26 1 14.2816 -4.3411 -6.7957 27 1 12.7285 -3.5247 -8.4695 28 1 14.9647 -2.5963 -8.3351 29 6 5.5766 1.6977 -1.4613 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8934 -0.5137 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 2.1393 1.6407 2.1428 36 1 1.9221 3.1775 1.2715 37 1 0.5559 2.0487 1.4391 38 1 3.3652 2.5788 -3.0221 39 1 2.2614 1.3782 -2.3027 40 1 3.2903 0.6016 -4.4683 41 1 3.6768 -0.4584 -3.0912 42 1 5.4719 1.7617 -4.1717 43 1 5.6927 0.0211 -4.4703 44 1 7.7391 -0.7179 -3.9657 45 1 10.1856 0.0985 -2.8148 46 1 9.8169 1.1833 -4.1770 47 1 12.0511 -0.2162 -4.7345 48 1 13.7372 -0.2819 -5.2445 49 1 6.0415 1.5467 -0.4871 50 1 5.8283 2.6886 -1.8391 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343519367.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:43 Heat of formation + Delta-G solvation = -155.367211 kcal Electronic energy + Delta-G solvation = -29680.918482 eV Core-core repulsion = 25513.104564 eV Total energy + Delta-G solvation = -4167.813919 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.83881 -41.00649 -40.15093 -38.29884 -36.66329 -36.52594 -35.50643 -34.06981 -33.26297 -32.36774 -30.57930 -29.40183 -27.18994 -26.40797 -25.77939 -24.67182 -22.84389 -22.13686 -21.74793 -21.10979 -20.10283 -19.69934 -18.99874 -18.36157 -17.61111 -17.24738 -16.91406 -16.80456 -16.56082 -16.19065 -15.96319 -15.72826 -15.49892 -15.37112 -15.11258 -14.92499 -14.52279 -14.38814 -14.17085 -13.99975 -13.83158 -13.61811 -13.40904 -13.36837 -13.02572 -12.81473 -12.73452 -12.67714 -12.43012 -12.12103 -12.03346 -11.97559 -11.92427 -11.72061 -11.62827 -11.60455 -11.55414 -11.03140 -10.70282 -10.63958 -10.33094 -10.19357 -9.75348 -8.98612 -6.14717 1.41691 1.47285 1.51379 1.54821 1.70110 1.82272 1.87189 2.10682 2.42352 2.92280 3.11003 3.36199 3.48789 3.67161 3.72057 3.84622 3.91830 3.95841 4.02067 4.05150 4.16064 4.27440 4.28713 4.35404 4.47459 4.51186 4.58549 4.59262 4.70591 4.71464 4.76919 4.82581 4.93084 5.03299 5.04011 5.06059 5.13702 5.15731 5.18687 5.31666 5.34057 5.44106 5.50266 5.55435 5.87353 6.33820 6.37841 6.43361 6.59798 7.01861 7.11151 7.31745 7.71271 8.47932 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.027747 B = 0.001861 C = 0.001808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.877221 B =15039.564470 C =15483.300198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.111 4.111 3 C -0.103 4.103 4 H 0.123 0.877 5 C -0.139 4.139 6 C 0.510 3.490 7 O -0.590 6.590 8 N -0.609 5.609 9 C 0.095 3.905 10 C -0.126 4.126 11 C -0.112 4.112 12 C -0.107 4.107 13 H 0.106 0.894 14 C 0.521 3.479 15 O -0.579 6.579 16 N -0.704 5.704 17 C 0.120 3.880 18 C 0.437 3.563 19 O -0.617 6.617 20 N -0.573 5.573 21 C -0.412 4.412 22 H 0.082 0.918 23 C -0.040 4.040 24 N -0.912 5.912 25 Si 1.138 2.862 26 H -0.271 1.271 27 H -0.273 1.273 28 H -0.274 1.274 29 C 0.137 3.863 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.049 0.951 35 H 0.043 0.957 36 H 0.052 0.948 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.118 0.882 40 H 0.111 0.889 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.415 0.585 45 H 0.092 0.908 46 H 0.097 0.903 47 H 0.387 0.613 48 H 0.260 0.740 49 H 0.065 0.935 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.609 5.900 6.392 30.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.149 4.149 3 C -0.124 4.124 4 H 0.141 0.859 5 C -0.196 4.196 6 C 0.301 3.699 7 O -0.470 6.470 8 N -0.341 5.341 9 C -0.026 4.026 10 C -0.164 4.164 11 C -0.150 4.150 12 C -0.130 4.130 13 H 0.124 0.876 14 C 0.308 3.692 15 O -0.459 6.459 16 N -0.358 5.358 17 C -0.008 4.008 18 C 0.225 3.775 19 O -0.504 6.504 20 N -0.210 5.210 21 C -0.541 4.541 22 H 0.100 0.900 23 C -0.239 4.239 24 N -0.550 5.550 25 Si 0.957 3.043 26 H -0.196 1.196 27 H -0.198 1.198 28 H -0.199 1.199 29 C 0.013 3.987 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.111 0.889 38 H 0.104 0.896 39 H 0.136 0.864 40 H 0.129 0.871 41 H 0.091 0.909 42 H 0.093 0.907 43 H 0.095 0.905 44 H 0.253 0.747 45 H 0.110 0.890 46 H 0.115 0.885 47 H 0.221 0.779 48 H 0.071 0.929 49 H 0.084 0.916 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -27.972 5.382 6.179 29.148 hybrid contribution -0.295 0.648 1.130 1.336 sum -28.267 6.030 7.310 29.813 Atomic orbital electron populations 1.21806 0.92968 1.02638 1.03102 1.21462 0.97984 0.93103 1.02392 1.21478 0.88684 1.00057 1.02195 0.85916 1.21750 1.02792 0.99779 0.95310 1.21541 0.92191 0.74248 0.81963 1.90680 1.66389 1.51434 1.38524 1.48284 1.06482 1.71992 1.07371 1.22218 0.95946 1.00772 0.83647 1.21924 0.93905 0.99459 1.01113 1.21598 0.96360 1.03627 0.93454 1.21589 0.89386 1.02195 0.99781 0.87606 1.20958 0.90116 0.80640 0.77511 1.90694 1.70511 1.34003 1.50661 1.45705 1.08788 1.34378 1.46891 1.20789 0.83241 0.98033 0.98764 1.20365 0.82766 0.88192 0.86189 1.90476 1.55589 1.43758 1.60564 1.41914 1.08450 1.29642 1.41043 1.20617 0.97346 1.11671 1.24445 0.90013 1.27936 0.91683 1.02800 1.01482 1.70946 1.37321 1.16422 1.30336 0.82569 0.75876 0.72257 0.73576 1.19625 1.19785 1.19908 1.21079 0.80596 0.97973 0.99028 0.92059 0.91948 0.90794 0.90934 0.93180 0.93780 0.92874 0.88937 0.89551 0.86425 0.87092 0.90893 0.90718 0.90454 0.74668 0.89034 0.88530 0.77899 0.92854 0.91602 0.90763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.67 71.98 0.70 -0.16 16 2 C -0.11 -1.17 5.28 30.60 0.16 -1.01 16 3 C -0.10 -1.26 1.92 -11.54 -0.02 -1.28 16 4 H 0.12 0.73 6.19 -2.39 -0.01 0.72 16 5 C -0.14 -1.83 8.80 71.98 0.63 -1.20 16 6 C 0.51 10.87 6.69 87.66 0.59 11.45 16 7 O -0.59 -18.73 15.58 -3.03 -0.05 -18.78 16 8 N -0.61 -10.94 2.97 -818.88 -2.43 -13.37 16 9 C 0.10 0.84 6.15 86.36 0.53 1.37 16 10 C -0.13 -1.13 6.08 30.67 0.19 -0.95 16 11 C -0.11 -1.75 5.07 30.62 0.16 -1.59 16 12 C -0.11 -2.37 2.68 -11.46 -0.03 -2.40 16 13 H 0.11 2.27 8.14 -2.38 -0.02 2.25 16 14 C 0.52 15.62 7.16 87.66 0.63 16.24 16 15 O -0.58 -21.31 15.92 -3.04 -0.05 -21.36 16 16 N -0.70 -22.18 5.41 -466.79 -2.53 -24.71 16 17 C 0.12 4.27 6.15 85.63 0.53 4.79 16 18 C 0.44 19.84 7.85 87.66 0.69 20.53 16 19 O -0.62 -31.32 15.24 -3.05 -0.05 -31.36 16 20 N -0.57 -28.28 5.28 -306.99 -1.62 -29.90 16 21 C -0.41 -22.67 9.68 84.04 0.81 -21.86 16 22 H 0.08 4.77 7.16 -2.91 -0.02 4.74 16 23 C -0.04 -2.11 5.50 84.93 0.47 -1.65 16 24 N -0.91 -50.06 13.68 21.66 0.30 -49.76 16 25 Si 1.14 46.93 29.92 68.60 2.05 48.98 16 26 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 27 H -0.27 -10.70 7.11 99.48 0.71 -10.00 16 28 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 29 C 0.14 3.28 5.07 86.36 0.44 3.72 16 30 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.06 0.35 6.46 -2.39 -0.02 0.33 16 32 H 0.07 0.20 8.14 -2.39 -0.02 0.18 16 33 H 0.07 0.67 8.11 -2.39 -0.02 0.66 16 34 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.04 0.81 7.68 -2.39 -0.02 0.79 16 36 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.09 0.73 6.35 -2.39 -0.02 0.71 16 38 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.12 0.41 5.51 -2.39 -0.01 0.40 16 40 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 41 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.08 1.26 7.53 -2.38 -0.02 1.24 16 44 H 0.41 12.71 6.84 -92.70 -0.63 12.08 16 45 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 46 H 0.10 3.24 8.14 -2.38 -0.02 3.22 16 47 H 0.39 17.77 6.73 -92.70 -0.62 17.15 16 48 H 0.26 13.89 6.78 -92.70 -0.63 13.27 16 49 H 0.07 2.03 7.00 -2.39 -0.02 2.02 16 50 H 0.07 1.82 7.96 -2.39 -0.02 1.80 16 Total: -1.00 -76.98 398.96 1.93 -75.05 By element: Atomic # 1 Polarization: 39.34 SS G_CDS: -0.15 Total: 39.19 kcal Atomic # 6 Polarization: 19.56 SS G_CDS: 6.46 Total: 26.02 kcal Atomic # 7 Polarization: -111.45 SS G_CDS: -6.29 Total: -117.74 kcal Atomic # 8 Polarization: -71.35 SS G_CDS: -0.14 Total: -71.50 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.05 Total: 48.98 kcal Total: -76.98 1.93 -75.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343519367.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.322 kcal (2) G-P(sol) polarization free energy of solvation -76.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds