Wall clock time and date at job start Sat Apr 11 2020 05:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.46900 * 2 1 4 4 N 1.46507 * 109.46854 * 119.99734 * 2 1 3 5 5 C 1.46761 * 124.34932 * 120.00505 * 4 2 1 6 6 C 1.54479 * 105.47425 * 162.97967 * 5 4 2 7 7 C 1.54626 * 101.76189 * 25.41727 * 6 5 4 8 8 H 1.09008 * 110.48289 * 216.39268 * 7 6 5 9 9 N 1.46502 * 110.49120 * 93.88347 * 7 6 5 10 10 C 1.34770 * 120.00583 * 154.99915 * 9 7 6 11 11 O 1.21353 * 119.99632 * 359.97438 * 10 9 7 12 12 C 1.49448 * 120.00494 * 179.97438 * 10 9 7 13 13 O 1.21353 * 119.99400 * 359.97438 * 12 10 9 14 14 N 1.34770 * 120.00494 * 180.02562 * 12 10 9 15 15 C 1.46493 * 120.00393 * 179.97438 * 14 12 10 16 16 C 1.52996 * 109.47400 * 179.97438 * 15 14 12 17 17 C 1.52996 * 109.47068 * 60.00416 * 16 15 14 18 18 C 1.53000 * 109.47166 * 300.00262 * 16 15 14 19 19 C 1.50702 * 109.47159 * 180.02562 * 16 15 14 20 20 H 1.08002 * 120.00299 * 0.02562 * 19 16 15 21 21 C 1.37884 * 119.99942 * 179.72211 * 19 16 15 22 22 N 1.31514 * 119.99698 * 0.28408 * 21 19 16 23 23 Si 1.86794 * 119.99837 * 180.27476 * 21 19 16 24 24 H 1.48496 * 109.47341 * 0.02562 * 23 21 19 25 25 H 1.48508 * 109.46983 * 120.00379 * 23 21 19 26 26 H 1.48503 * 109.47491 * 240.00192 * 23 21 19 27 27 C 1.34417 * 124.34585 * 299.99724 * 4 2 1 28 28 O 1.21279 * 124.94656 * 0.44998 * 27 4 2 29 29 H 1.09003 * 109.47386 * 60.00509 * 1 2 3 30 30 H 1.09005 * 109.47268 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47648 * 299.99962 * 1 2 3 32 32 H 1.08994 * 109.47397 * 239.99725 * 2 1 3 33 33 H 1.09004 * 109.47230 * 179.97438 * 3 2 1 34 34 H 1.09007 * 109.47347 * 299.99654 * 3 2 1 35 35 H 1.09002 * 109.47671 * 59.99742 * 3 2 1 36 36 H 1.09000 * 110.24395 * 43.97877 * 5 4 2 37 37 H 1.09005 * 110.31743 * 282.02111 * 5 4 2 38 38 H 1.08999 * 110.96899 * 267.29564 * 6 5 4 39 39 H 1.09003 * 110.99704 * 143.54440 * 6 5 4 40 40 H 0.97000 * 119.99259 * 334.99249 * 9 7 6 41 41 H 0.97000 * 119.99567 * 359.97438 * 14 12 10 42 42 H 1.09004 * 109.46794 * 59.99777 * 15 14 12 43 43 H 1.09000 * 109.47559 * 300.00254 * 15 14 12 44 44 H 1.09001 * 109.47094 * 180.02562 * 17 16 15 45 45 H 1.09003 * 109.46851 * 300.00074 * 17 16 15 46 46 H 1.09003 * 109.47532 * 60.00149 * 17 16 15 47 47 H 1.09004 * 109.47084 * 299.99410 * 18 16 15 48 48 H 1.08994 * 109.47175 * 59.99981 * 18 16 15 49 49 H 1.09001 * 109.47192 * 179.97438 * 18 16 15 50 50 H 0.97005 * 119.99651 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.8656 -1.8887 1.1729 6 6 3.4723 -1.9921 2.5898 7 6 2.4202 -1.2415 3.4388 8 1 2.9052 -0.6760 4.2345 9 7 1.4477 -2.1827 3.9997 10 6 0.7781 -1.8684 5.1262 11 8 0.9810 -0.8058 5.6762 12 6 -0.2144 -2.8283 5.6982 13 8 -0.4176 -3.8906 5.1479 14 7 -0.8845 -2.5137 6.8244 15 6 -1.8577 -3.4544 7.3847 16 6 -2.4709 -2.8586 8.6535 17 6 -3.1723 -1.5426 8.3115 18 6 -1.3663 -2.5963 9.6791 19 6 -3.4717 -3.8266 9.2301 20 1 -3.6520 -4.7724 8.7409 21 6 -4.1525 -3.5075 10.3859 22 7 -3.9327 -2.3559 10.9819 23 14 -5.3873 -4.7106 11.1049 24 1 -5.4502 -5.9245 10.2518 25 1 -4.9659 -5.0916 12.4770 26 1 -6.7272 -4.0725 11.1579 27 6 1.7479 -0.3081 2.4562 28 8 1.0639 0.6459 2.7610 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9563 -0.8901 35 1 1.6766 1.9564 0.8899 36 1 3.6564 -1.7770 0.4311 37 1 2.2658 -2.7722 0.9540 38 1 4.4401 -1.4928 2.6371 39 1 3.5566 -3.0326 2.9036 40 1 1.2858 -3.0321 3.5602 41 1 -0.7223 -1.6644 7.2640 42 1 -1.3580 -4.3919 7.6287 43 1 -2.6445 -3.6416 6.6538 44 1 -3.6088 -1.1179 9.2155 45 1 -2.4481 -0.8426 7.8946 46 1 -3.9593 -1.7294 7.5808 47 1 -0.8667 -3.5339 9.9228 48 1 -0.6422 -1.8964 9.2623 49 1 -1.8031 -2.1714 10.5829 50 1 -4.4119 -2.1312 11.7948 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000422324590.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:54 Heat of formation + Delta-G solvation = -105.114634 kcal Electronic energy + Delta-G solvation = -30351.759358 eV Core-core repulsion = 26186.124555 eV Total energy + Delta-G solvation = -4165.634804 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.29299 -40.08391 -38.29052 -36.76968 -36.48069 -35.93826 -33.76603 -33.10628 -30.88375 -29.91035 -27.82262 -27.50563 -26.17667 -25.70360 -25.25211 -23.59521 -22.84336 -22.04058 -20.36333 -19.25465 -19.02002 -18.34200 -17.37003 -16.90953 -16.23569 -15.89633 -15.71927 -15.54524 -15.07801 -14.87499 -14.70455 -14.53100 -14.14215 -13.96971 -13.73157 -13.56621 -13.33431 -13.29677 -12.92736 -12.69174 -12.39735 -12.25800 -12.20923 -12.07502 -11.86726 -11.59797 -11.50271 -11.44132 -11.38940 -11.17584 -10.88521 -10.66556 -10.44750 -10.38738 -10.19132 -9.63928 -9.55302 -9.24394 -9.18860 -9.05488 -8.78251 -8.60599 -8.36600 -6.01678 -4.12436 1.60617 2.00573 2.55072 2.81198 3.27624 3.36290 3.40238 3.43478 3.86181 3.93073 3.96209 4.30998 4.39798 4.47692 4.58301 4.72884 4.77770 4.82588 4.97462 5.17706 5.24975 5.27107 5.30521 5.33249 5.38687 5.45320 5.54604 5.86468 5.95529 5.99688 6.11754 6.23987 6.30272 6.48082 6.62557 6.77737 6.82276 6.87300 6.95175 7.00806 7.02172 7.34687 7.56785 7.64413 7.70762 7.91930 7.94596 8.01601 8.13592 8.31832 8.41176 8.87986 9.53411 10.99773 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023417 B = 0.002200 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.450141 B =12721.938415 C =12943.065574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.154 3.846 3 C -0.168 4.168 4 N -0.617 5.617 5 C 0.099 3.901 6 C -0.141 4.141 7 C 0.112 3.888 8 H 0.126 0.874 9 N -0.693 5.693 10 C 0.509 3.491 11 O -0.501 6.501 12 C 0.499 3.501 13 O -0.536 6.536 14 N -0.678 5.678 15 C 0.128 3.872 16 C 0.055 3.945 17 C -0.134 4.134 18 C -0.134 4.134 19 C -0.506 4.506 20 H 0.059 0.941 21 C 0.066 3.934 22 N -0.884 5.884 23 Si 0.894 3.106 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.284 1.284 27 C 0.508 3.492 28 O -0.502 6.502 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.100 0.900 39 H 0.103 0.897 40 H 0.415 0.585 41 H 0.411 0.589 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.087 0.913 45 H 0.009 0.991 46 H 0.028 0.972 47 H 0.027 0.973 48 H 0.009 0.991 49 H 0.087 0.913 50 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.711 2.183 -21.992 27.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.052 3.948 3 C -0.226 4.226 4 N -0.354 5.354 5 C -0.024 4.024 6 C -0.179 4.179 7 C 0.004 3.996 8 H 0.144 0.856 9 N -0.350 5.350 10 C 0.290 3.710 11 O -0.374 6.374 12 C 0.278 3.722 13 O -0.414 6.414 14 N -0.330 5.330 15 C 0.006 3.994 16 C 0.055 3.945 17 C -0.192 4.192 18 C -0.192 4.192 19 C -0.545 4.545 20 H 0.077 0.923 21 C -0.136 4.136 22 N -0.522 5.522 23 Si 0.722 3.278 24 H -0.198 1.198 25 H -0.211 1.211 26 H -0.211 1.211 27 C 0.292 3.708 28 O -0.374 6.374 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.106 0.894 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.101 0.899 37 H 0.093 0.907 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.252 0.748 41 H 0.249 0.751 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.106 0.894 45 H 0.028 0.972 46 H 0.047 0.953 47 H 0.047 0.953 48 H 0.028 0.972 49 H 0.106 0.894 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 16.212 2.880 -21.672 27.217 hybrid contribution -0.635 -0.677 0.278 0.969 sum 15.577 2.202 -21.394 26.556 Atomic orbital electron populations 1.22198 0.94535 1.02583 1.03480 1.20952 0.94650 0.93104 0.86122 1.22190 1.01146 0.95788 1.03500 1.48477 1.51779 1.28987 1.06137 1.22150 0.94191 0.87985 0.98052 1.22954 0.98370 1.03028 0.93528 1.21686 0.89858 0.91510 0.96590 0.85639 1.45443 1.41717 1.21338 1.26519 1.20588 0.81962 0.87265 0.81139 1.90799 1.63572 1.23571 1.59431 1.19837 0.82779 0.86795 0.82800 1.90719 1.66092 1.24184 1.60433 1.46224 1.39609 1.22958 1.24167 1.21958 0.89304 0.91230 0.96873 1.18390 0.93299 0.94078 0.88759 1.21860 0.98317 0.97234 1.01774 1.21860 0.96415 0.98261 1.02629 1.20983 1.21784 1.02709 1.09001 0.92299 1.24893 0.96767 0.95294 0.96611 1.69823 1.41905 1.21399 1.19091 0.86499 0.81052 0.81269 0.78947 1.19772 1.21065 1.21059 1.21148 0.80882 0.85110 0.83678 1.90746 1.37382 1.28150 1.81106 0.91391 0.92390 0.90882 0.89424 0.92500 0.91400 0.90899 0.89863 0.90726 0.88138 0.87884 0.74773 0.75103 0.91923 0.91974 0.89436 0.97219 0.95330 0.95332 0.97245 0.89401 0.92991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.50 9.20 37.16 0.34 -1.16 16 2 C 0.15 1.15 3.48 -67.93 -0.24 0.91 16 3 C -0.17 -1.29 9.20 37.15 0.34 -0.95 16 4 N -0.62 -5.13 2.83 -164.84 -0.47 -5.60 16 5 C 0.10 0.46 7.30 -3.12 -0.02 0.44 16 6 C -0.14 -0.66 6.78 -25.10 -0.17 -0.83 16 7 C 0.11 1.10 3.28 -67.94 -0.22 0.88 16 8 H 0.13 1.36 7.55 -51.92 -0.39 0.97 16 9 N -0.69 -8.09 5.09 -54.24 -0.28 -8.36 16 10 C 0.51 8.06 7.89 -11.59 -0.09 7.97 16 11 O -0.50 -9.18 16.13 5.49 0.09 -9.09 16 12 C 0.50 8.87 7.89 -11.59 -0.09 8.78 16 13 O -0.54 -10.15 16.48 5.49 0.09 -10.06 16 14 N -0.68 -12.87 4.95 -60.74 -0.30 -13.17 16 15 C 0.13 2.71 4.50 -4.05 -0.02 2.69 16 16 C 0.06 1.30 0.50 -155.66 -0.08 1.22 16 17 C -0.13 -3.14 8.08 37.16 0.30 -2.84 16 18 C -0.13 -3.09 8.07 37.16 0.30 -2.79 16 19 C -0.51 -13.20 8.01 -34.44 -0.28 -13.48 16 20 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 21 C 0.07 1.74 5.15 -17.82 -0.09 1.64 16 22 N -0.88 -23.78 9.35 55.43 0.52 -23.26 16 23 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16 24 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 26 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 27 C 0.51 6.09 7.05 -10.86 -0.08 6.02 16 28 O -0.50 -8.31 15.12 5.56 0.08 -8.22 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.89 6.77 -51.93 -0.35 0.54 16 32 H 0.09 0.43 8.07 -51.93 -0.42 0.01 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 35 H 0.07 0.78 6.80 -51.93 -0.35 0.43 16 36 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 37 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.10 0.35 8.07 -51.93 -0.42 -0.07 16 40 H 0.42 4.10 8.11 -40.82 -0.33 3.77 16 41 H 0.41 7.79 5.64 -40.82 -0.23 7.56 16 42 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 43 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 44 H 0.09 2.25 6.08 -51.93 -0.32 1.93 16 45 H 0.01 0.19 6.86 -51.93 -0.36 -0.16 16 46 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 48 H 0.01 0.18 6.86 -51.93 -0.36 -0.17 16 49 H 0.09 2.24 6.06 -51.93 -0.31 1.92 16 50 H 0.26 6.73 8.31 -40.82 -0.34 6.40 16 LS Contribution 399.67 15.07 6.02 6.02 Total: -1.00 -32.28 399.67 -7.38 -39.66 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -8.03 Total: 7.90 kcal Atomic # 6 Polarization: 8.59 SS G_CDS: -0.09 Total: 8.50 kcal Atomic # 7 Polarization: -49.87 SS G_CDS: -0.53 Total: -50.40 kcal Atomic # 8 Polarization: -27.64 SS G_CDS: 0.26 Total: -27.37 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.28 -7.38 -39.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422324590.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.454 kcal (2) G-P(sol) polarization free energy of solvation -32.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds