Wall clock time and date at job start Sat Apr 11 2020 05:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.46900 * 2 1 4 4 N 1.46507 * 109.46854 * 119.99734 * 2 1 3 5 5 C 1.46761 * 124.34932 * 120.00505 * 4 2 1 6 6 C 1.54479 * 105.47425 * 162.97967 * 5 4 2 7 7 C 1.54626 * 101.76189 * 25.41727 * 6 5 4 8 8 H 1.09008 * 110.48289 * 216.39268 * 7 6 5 9 9 N 1.46502 * 110.49120 * 93.88347 * 7 6 5 10 10 C 1.34770 * 120.00583 * 154.99915 * 9 7 6 11 11 O 1.21353 * 119.99632 * 359.97438 * 10 9 7 12 12 C 1.49448 * 120.00494 * 179.97438 * 10 9 7 13 13 O 1.21353 * 119.99400 * 359.97438 * 12 10 9 14 14 N 1.34770 * 120.00494 * 180.02562 * 12 10 9 15 15 C 1.46493 * 120.00393 * 179.97438 * 14 12 10 16 16 C 1.52996 * 109.47400 * 179.97438 * 15 14 12 17 17 C 1.52996 * 109.47068 * 60.00416 * 16 15 14 18 18 C 1.53000 * 109.47166 * 300.00262 * 16 15 14 19 19 C 1.50702 * 109.47159 * 180.02562 * 16 15 14 20 20 H 1.08002 * 120.00299 * 0.02562 * 19 16 15 21 21 C 1.37884 * 119.99942 * 179.72211 * 19 16 15 22 22 N 1.31514 * 119.99698 * 0.28408 * 21 19 16 23 23 Si 1.86794 * 119.99837 * 180.27476 * 21 19 16 24 24 H 1.48496 * 109.47341 * 0.02562 * 23 21 19 25 25 H 1.48508 * 109.46983 * 120.00379 * 23 21 19 26 26 H 1.48503 * 109.47491 * 240.00192 * 23 21 19 27 27 C 1.34417 * 124.34585 * 299.99724 * 4 2 1 28 28 O 1.21279 * 124.94656 * 0.44998 * 27 4 2 29 29 H 1.09003 * 109.47386 * 60.00509 * 1 2 3 30 30 H 1.09005 * 109.47268 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47648 * 299.99962 * 1 2 3 32 32 H 1.08994 * 109.47397 * 239.99725 * 2 1 3 33 33 H 1.09004 * 109.47230 * 179.97438 * 3 2 1 34 34 H 1.09007 * 109.47347 * 299.99654 * 3 2 1 35 35 H 1.09002 * 109.47671 * 59.99742 * 3 2 1 36 36 H 1.09000 * 110.24395 * 43.97877 * 5 4 2 37 37 H 1.09005 * 110.31743 * 282.02111 * 5 4 2 38 38 H 1.08999 * 110.96899 * 267.29564 * 6 5 4 39 39 H 1.09003 * 110.99704 * 143.54440 * 6 5 4 40 40 H 0.97000 * 119.99259 * 334.99249 * 9 7 6 41 41 H 0.97000 * 119.99567 * 359.97438 * 14 12 10 42 42 H 1.09004 * 109.46794 * 59.99777 * 15 14 12 43 43 H 1.09000 * 109.47559 * 300.00254 * 15 14 12 44 44 H 1.09001 * 109.47094 * 180.02562 * 17 16 15 45 45 H 1.09003 * 109.46851 * 300.00074 * 17 16 15 46 46 H 1.09003 * 109.47532 * 60.00149 * 17 16 15 47 47 H 1.09004 * 109.47084 * 299.99410 * 18 16 15 48 48 H 1.08994 * 109.47175 * 59.99981 * 18 16 15 49 49 H 1.09001 * 109.47192 * 179.97438 * 18 16 15 50 50 H 0.97005 * 119.99651 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.8656 -1.8887 1.1729 6 6 3.4723 -1.9921 2.5898 7 6 2.4202 -1.2415 3.4388 8 1 2.9052 -0.6760 4.2345 9 7 1.4477 -2.1827 3.9997 10 6 0.7781 -1.8684 5.1262 11 8 0.9810 -0.8058 5.6762 12 6 -0.2144 -2.8283 5.6982 13 8 -0.4176 -3.8906 5.1479 14 7 -0.8845 -2.5137 6.8244 15 6 -1.8577 -3.4544 7.3847 16 6 -2.4709 -2.8586 8.6535 17 6 -3.1723 -1.5426 8.3115 18 6 -1.3663 -2.5963 9.6791 19 6 -3.4717 -3.8266 9.2301 20 1 -3.6520 -4.7724 8.7409 21 6 -4.1525 -3.5075 10.3859 22 7 -3.9327 -2.3559 10.9819 23 14 -5.3873 -4.7106 11.1049 24 1 -5.4502 -5.9245 10.2518 25 1 -4.9659 -5.0916 12.4770 26 1 -6.7272 -4.0725 11.1579 27 6 1.7479 -0.3081 2.4562 28 8 1.0639 0.6459 2.7610 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9563 -0.8901 35 1 1.6766 1.9564 0.8899 36 1 3.6564 -1.7770 0.4311 37 1 2.2658 -2.7722 0.9540 38 1 4.4401 -1.4928 2.6371 39 1 3.5566 -3.0326 2.9036 40 1 1.2858 -3.0321 3.5602 41 1 -0.7223 -1.6644 7.2640 42 1 -1.3580 -4.3919 7.6287 43 1 -2.6445 -3.6416 6.6538 44 1 -3.6088 -1.1179 9.2155 45 1 -2.4481 -0.8426 7.8946 46 1 -3.9593 -1.7294 7.5808 47 1 -0.8667 -3.5339 9.9228 48 1 -0.6422 -1.8964 9.2623 49 1 -1.8031 -2.1714 10.5829 50 1 -4.4119 -2.1312 11.7948 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000422324590.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:53 Heat of formation + Delta-G solvation = -128.265737 kcal Electronic energy + Delta-G solvation = -30352.763265 eV Core-core repulsion = 26186.124555 eV Total energy + Delta-G solvation = -4166.638711 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.21870 -41.30086 -39.66222 -38.22153 -37.64498 -36.79482 -35.17863 -34.28864 -32.76422 -30.59887 -28.65818 -28.16320 -27.71253 -27.61061 -27.15928 -24.94311 -23.43953 -22.79147 -21.69623 -20.74248 -20.08790 -19.72592 -18.34956 -17.97517 -17.65628 -17.20021 -17.05690 -16.66792 -16.41631 -16.19427 -15.78477 -15.73387 -15.08774 -15.00338 -14.80246 -14.75664 -14.57744 -14.30874 -14.14786 -14.06310 -13.90036 -13.23747 -13.15993 -13.04849 -12.90345 -12.83415 -12.72387 -12.57337 -12.56353 -12.43679 -12.30060 -12.16436 -12.12798 -12.12000 -11.52838 -11.40750 -11.31781 -10.80474 -10.67372 -10.42662 -10.19057 -10.11669 -9.72838 -8.02130 -6.18853 0.26690 0.97129 1.43126 1.46929 1.56329 1.67876 1.92046 2.11783 2.45271 2.70946 3.21808 3.27049 3.34043 3.42334 3.80853 3.95700 4.06300 4.13971 4.27765 4.32177 4.45511 4.48614 4.64696 4.65589 4.67196 4.80346 4.83022 4.85018 4.88645 4.90211 4.99179 5.01674 5.03363 5.14762 5.15074 5.18470 5.20450 5.26946 5.45669 5.62537 5.66530 5.67007 5.83344 6.08514 6.09303 6.17097 6.32549 6.39716 6.66425 6.84666 6.90810 7.10463 7.49239 8.97517 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023417 B = 0.002200 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.450141 B =12721.938415 C =12943.065574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.148 3.852 3 C -0.164 4.164 4 N -0.609 5.609 5 C 0.093 3.907 6 C -0.124 4.124 7 C 0.104 3.896 8 H 0.112 0.888 9 N -0.672 5.672 10 C 0.512 3.488 11 O -0.531 6.531 12 C 0.501 3.499 13 O -0.546 6.546 14 N -0.682 5.682 15 C 0.143 3.857 16 C 0.050 3.950 17 C -0.125 4.125 18 C -0.124 4.124 19 C -0.523 4.523 20 H 0.053 0.947 21 C 0.024 3.976 22 N -0.902 5.902 23 Si 0.951 3.049 24 H -0.270 1.270 25 H -0.282 1.282 26 H -0.284 1.284 27 C 0.494 3.506 28 O -0.562 6.562 29 H 0.086 0.914 30 H 0.057 0.943 31 H 0.030 0.970 32 H 0.129 0.871 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.033 0.967 36 H 0.118 0.882 37 H 0.090 0.910 38 H 0.123 0.877 39 H 0.125 0.875 40 H 0.426 0.574 41 H 0.412 0.588 42 H 0.060 0.940 43 H 0.054 0.946 44 H 0.064 0.936 45 H 0.026 0.974 46 H 0.023 0.977 47 H 0.026 0.974 48 H 0.028 0.972 49 H 0.063 0.937 50 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.740 0.606 -24.521 30.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.047 3.953 3 C -0.222 4.222 4 N -0.343 5.343 5 C -0.029 4.029 6 C -0.162 4.162 7 C -0.004 4.004 8 H 0.130 0.870 9 N -0.328 5.328 10 C 0.293 3.707 11 O -0.407 6.407 12 C 0.281 3.719 13 O -0.425 6.425 14 N -0.333 5.333 15 C 0.021 3.979 16 C 0.049 3.951 17 C -0.183 4.183 18 C -0.182 4.182 19 C -0.562 4.562 20 H 0.072 0.928 21 C -0.175 4.175 22 N -0.541 5.541 23 Si 0.777 3.223 24 H -0.195 1.195 25 H -0.208 1.208 26 H -0.210 1.210 27 C 0.279 3.721 28 O -0.439 6.439 29 H 0.105 0.895 30 H 0.076 0.924 31 H 0.049 0.951 32 H 0.146 0.854 33 H 0.087 0.913 34 H 0.103 0.897 35 H 0.052 0.948 36 H 0.136 0.864 37 H 0.108 0.892 38 H 0.141 0.859 39 H 0.144 0.856 40 H 0.265 0.735 41 H 0.250 0.750 42 H 0.078 0.922 43 H 0.072 0.928 44 H 0.083 0.917 45 H 0.045 0.955 46 H 0.042 0.958 47 H 0.046 0.954 48 H 0.047 0.953 49 H 0.082 0.918 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 18.290 1.246 -24.276 30.420 hybrid contribution -1.229 -0.181 0.950 1.564 sum 17.060 1.066 -23.326 28.919 Atomic orbital electron populations 1.22173 0.95951 1.02123 1.02317 1.21170 0.93616 0.93452 0.87064 1.22143 1.01781 0.95868 1.02381 1.48643 1.50984 1.29509 1.05150 1.22535 0.94788 0.86727 0.98817 1.23055 0.97342 1.03763 0.92014 1.21934 0.90254 0.91621 0.96552 0.87040 1.45370 1.40728 1.21860 1.24855 1.20204 0.81933 0.86345 0.82235 1.90795 1.64650 1.24524 1.60720 1.20162 0.82662 0.86917 0.82128 1.90705 1.66459 1.24737 1.60552 1.46095 1.39726 1.22643 1.24851 1.21578 0.89442 0.91270 0.95653 1.18387 0.93168 0.93682 0.89836 1.21722 0.98478 0.97583 1.00498 1.21708 0.96507 0.98447 1.01535 1.21262 1.22591 1.03020 1.09332 0.92848 1.25536 0.98297 0.96670 0.97046 1.69945 1.42483 1.22458 1.19227 0.85621 0.78984 0.79501 0.78172 1.19477 1.20840 1.21023 1.21559 0.80492 0.84723 0.85347 1.90716 1.40135 1.30772 1.82265 0.89545 0.92412 0.95060 0.85354 0.91310 0.89729 0.94807 0.86361 0.89224 0.85856 0.85650 0.73490 0.75047 0.92197 0.92758 0.91745 0.95548 0.95814 0.95437 0.95332 0.91795 0.93071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.85 9.20 71.98 0.66 -2.19 16 2 C 0.15 1.88 3.48 44.99 0.16 2.04 16 3 C -0.16 -2.32 9.20 71.98 0.66 -1.66 16 4 N -0.61 -8.77 2.83 -794.04 -2.25 -11.02 16 5 C 0.09 0.44 7.30 86.83 0.63 1.08 16 6 C -0.12 -0.68 6.78 31.65 0.21 -0.47 16 7 C 0.10 1.92 3.28 44.98 0.15 2.07 16 8 H 0.11 2.40 7.55 -2.38 -0.02 2.38 16 9 N -0.67 -14.88 5.09 -443.89 -2.26 -17.14 16 10 C 0.51 16.14 7.89 87.27 0.69 16.83 16 11 O -0.53 -19.84 16.13 -3.26 -0.05 -19.90 16 12 C 0.50 17.64 7.89 87.27 0.69 18.33 16 13 O -0.55 -20.18 16.48 -3.26 -0.05 -20.23 16 14 N -0.68 -25.84 4.95 -464.43 -2.30 -28.14 16 15 C 0.14 6.06 4.50 86.38 0.39 6.45 16 16 C 0.05 2.37 0.50 -52.93 -0.03 2.34 16 17 C -0.12 -5.93 8.08 71.98 0.58 -5.35 16 18 C -0.12 -5.76 8.07 71.98 0.58 -5.18 16 19 C -0.52 -27.51 8.01 25.60 0.21 -27.31 16 20 H 0.05 2.80 7.74 -2.91 -0.02 2.78 16 21 C 0.02 1.28 5.15 84.66 0.44 1.71 16 22 N -0.90 -49.19 9.35 21.45 0.20 -48.99 16 23 Si 0.95 42.64 29.54 68.60 2.03 44.67 16 24 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 25 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 26 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 27 C 0.49 11.75 7.05 87.90 0.62 12.37 16 28 O -0.56 -19.74 15.12 -3.03 -0.05 -19.78 16 29 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 31 H 0.03 0.80 6.77 -2.39 -0.02 0.78 16 32 H 0.13 0.66 8.07 -2.39 -0.02 0.64 16 33 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 34 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 35 H 0.03 0.76 6.80 -2.39 -0.02 0.74 16 36 H 0.12 -0.12 8.14 -2.39 -0.02 -0.14 16 37 H 0.09 0.25 8.14 -2.38 -0.02 0.24 16 38 H 0.12 0.22 8.14 -2.39 -0.02 0.20 16 39 H 0.13 0.22 8.07 -2.39 -0.02 0.21 16 40 H 0.43 7.49 8.11 -92.71 -0.75 6.74 16 41 H 0.41 15.62 5.64 -92.71 -0.52 15.10 16 42 H 0.06 2.55 8.14 -2.38 -0.02 2.53 16 43 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 44 H 0.06 3.37 6.08 -2.39 -0.01 3.35 16 45 H 0.03 1.12 6.86 -2.39 -0.02 1.10 16 46 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.03 1.23 8.14 -2.38 -0.02 1.21 16 48 H 0.03 1.17 6.86 -2.39 -0.02 1.15 16 49 H 0.06 3.29 6.06 -2.39 -0.01 3.28 16 50 H 0.26 13.61 8.31 -92.70 -0.77 12.84 16 Total: -1.00 -73.82 399.67 1.60 -72.22 By element: Atomic # 1 Polarization: 27.56 SS G_CDS: -0.31 Total: 27.25 kcal Atomic # 6 Polarization: 14.41 SS G_CDS: 6.64 Total: 21.05 kcal Atomic # 7 Polarization: -98.67 SS G_CDS: -6.61 Total: -105.28 kcal Atomic # 8 Polarization: -59.76 SS G_CDS: -0.15 Total: -59.91 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -73.82 1.60 -72.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422324590.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.044 kcal (2) G-P(sol) polarization free energy of solvation -73.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds