Wall clock time and date at job start Sat Apr 11 2020 05:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53012 * 1 3 3 C 1.52997 * 109.47026 * 2 1 4 4 C 1.52996 * 109.46922 * 119.99734 * 2 1 3 5 5 O 1.45192 * 109.47056 * 239.99998 * 2 1 3 6 6 C 1.34644 * 117.00323 * 59.99653 * 5 2 1 7 7 O 1.21516 * 119.99432 * 0.02562 * 6 5 2 8 8 N 1.34772 * 120.00290 * 180.02562 * 6 5 2 9 9 C 1.46496 * 119.99896 * 180.02562 * 8 6 5 10 10 H 1.08998 * 110.85988 * 37.34241 * 9 8 6 11 11 C 1.54622 * 110.97031 * 273.54591 * 9 8 6 12 12 C 1.51284 * 104.19494 * 217.08426 * 11 9 8 13 13 O 1.21287 * 124.94296 * 196.28550 * 12 11 9 14 14 N 1.34421 * 110.11955 * 16.25407 * 12 11 9 15 15 C 1.46493 * 124.35132 * 180.42950 * 14 12 11 16 16 N 1.46499 * 109.47395 * 89.97734 * 15 14 12 17 17 C 1.36942 * 119.99408 * 270.00140 * 16 15 14 18 18 H 1.07999 * 119.99912 * 140.36522 * 17 16 15 19 19 C 1.38808 * 119.99826 * 320.35233 * 17 16 15 20 20 N 1.31621 * 120.00424 * 340.55975 * 19 17 16 21 21 Si 1.86803 * 119.99770 * 160.55388 * 19 17 16 22 22 H 1.48506 * 109.47104 * 60.00426 * 21 19 17 23 23 H 1.48493 * 109.47262 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47280 * 300.00437 * 21 19 17 25 25 C 1.46499 * 120.00433 * 89.99511 * 16 15 14 26 26 C 1.52995 * 117.49873 * 183.28707 * 25 16 15 27 27 C 1.53000 * 117.49460 * 114.66480 * 25 16 15 28 28 C 1.46764 * 111.29474 * 0.40422 * 14 12 11 29 29 H 1.08993 * 109.47084 * 60.00059 * 1 2 3 30 30 H 1.09001 * 109.46944 * 300.00128 * 1 2 3 31 31 H 1.08992 * 109.46967 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47471 * 59.99587 * 3 2 1 33 33 H 1.08999 * 109.47241 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47054 * 300.00091 * 3 2 1 35 35 H 1.09006 * 109.47133 * 60.00333 * 4 2 1 36 36 H 1.09002 * 109.46645 * 179.97438 * 4 2 1 37 37 H 1.09001 * 109.47424 * 299.99844 * 4 2 1 38 38 H 0.97005 * 119.99935 * 0.02562 * 8 6 5 39 39 H 1.09001 * 110.48938 * 335.75972 * 11 9 8 40 40 H 1.08999 * 110.48714 * 98.41146 * 11 9 8 41 41 H 1.09007 * 109.47175 * 209.97323 * 15 14 12 42 42 H 1.09001 * 109.47160 * 329.97177 * 15 14 12 43 43 H 0.96999 * 119.99887 * 175.01106 * 20 19 17 44 44 H 1.09004 * 115.54599 * 328.99676 * 25 16 15 45 45 H 1.09001 * 117.50310 * 359.97438 * 26 25 16 46 46 H 1.08999 * 117.49999 * 145.02058 * 26 25 16 47 47 H 1.09004 * 117.49600 * 214.97803 * 27 25 16 48 48 H 1.08995 * 117.50114 * 359.97438 * 27 25 16 49 49 H 1.09004 * 110.24841 * 223.98228 * 28 14 12 50 50 H 1.09002 * 110.24123 * 101.98509 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 8 2.0141 -0.6844 -1.1855 6 6 1.6523 -0.1729 -2.3773 7 8 0.9516 0.8187 -2.4252 8 7 2.0672 -0.7606 -3.5169 9 6 1.6739 -0.2037 -4.8135 10 1 1.6611 0.8857 -4.7802 11 6 0.3026 -0.7599 -5.2617 12 6 0.4408 -0.9254 -6.7591 13 8 -0.4840 -1.0690 -7.5305 14 7 1.7378 -0.8895 -7.1105 15 6 2.2251 -1.0112 -8.4866 16 7 2.3087 0.3191 -9.0946 17 6 1.2313 0.8346 -9.7645 18 1 0.9826 1.8807 -9.6635 19 6 0.4591 0.0126 -10.5737 20 7 0.9471 -1.1301 -11.0077 21 14 -1.2730 0.5281 -11.0465 22 1 -1.2219 1.8145 -11.7868 23 1 -1.8822 -0.5159 -11.9091 24 1 -2.0922 0.6955 -9.8192 25 6 3.5447 1.0980 -8.9857 26 6 3.5440 2.5101 -9.5745 27 6 4.3124 1.3888 -10.2768 28 6 2.6029 -0.7121 -5.9383 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.6767 1.9564 0.8899 33 1 3.1301 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 -1.7489 1.2493 36 1 3.1301 -0.7216 1.2490 37 1 1.6767 -0.2073 2.1392 38 1 2.6262 -1.5525 -3.4785 39 1 0.1078 -1.7220 -4.7880 40 1 -0.4915 -0.0507 -5.0281 41 1 3.2131 -1.4716 -8.4829 42 1 1.5375 -1.6311 -9.0621 43 1 0.3839 -1.7376 -11.5123 44 1 4.1279 0.9300 -8.0802 45 1 2.6241 2.8596 -10.0432 46 1 4.1268 3.2717 -9.0563 47 1 5.4007 1.4127 -10.2207 48 1 3.8981 1.0003 -11.2071 49 1 3.3779 0.0248 -6.1494 50 1 3.0532 -1.6633 -5.6544 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495125311.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:10 Heat of formation + Delta-G solvation = -55.603671 kcal Electronic energy + Delta-G solvation = -30968.690777 eV Core-core repulsion = 26805.202930 eV Total energy + Delta-G solvation = -4163.487847 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.97695 -39.72632 -37.56105 -36.89738 -35.84981 -34.54268 -33.99733 -33.04637 -30.98941 -29.34954 -27.67709 -27.60667 -27.14238 -25.41030 -23.64773 -22.79828 -21.40683 -21.12103 -20.37954 -19.94341 -18.86944 -18.25933 -17.00569 -16.62138 -16.32307 -15.93572 -15.72705 -15.43324 -14.88587 -14.75026 -14.60009 -14.48770 -13.88089 -13.74053 -13.48034 -13.31962 -13.11679 -12.85538 -12.74145 -12.54267 -12.39452 -12.14622 -12.14153 -11.87783 -11.81987 -11.57202 -11.47069 -11.19793 -11.01675 -10.97024 -10.61717 -10.57304 -10.49048 -10.32726 -10.18899 -9.95835 -9.67134 -9.52111 -9.40823 -8.86949 -8.40272 -8.02113 -6.66592 -5.85202 -3.47492 1.97101 2.71742 3.34484 3.48360 3.51882 3.62630 3.80865 4.01154 4.45912 4.49665 4.53004 4.55459 4.64685 4.78344 4.90614 5.06199 5.19300 5.21638 5.24694 5.27671 5.34948 5.42503 5.45696 5.50901 5.61474 5.62363 5.71469 5.71801 5.83097 5.88201 6.00197 6.06130 6.06415 6.10049 6.16181 6.26420 6.29925 6.38207 6.46113 6.56944 6.99958 7.19546 7.23718 7.27630 7.46145 7.82736 8.02405 8.26266 8.48256 9.04749 9.10034 9.72741 10.25225 11.16910 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016559 B = 0.002849 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.519031 B = 9824.274081 C =10608.095068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.137 3.863 3 C -0.184 4.184 4 C -0.140 4.140 5 O -0.366 6.366 6 C 0.651 3.349 7 O -0.563 6.563 8 N -0.700 5.700 9 C 0.153 3.847 10 H 0.111 0.889 11 C -0.171 4.171 12 C 0.518 3.482 13 O -0.511 6.511 14 N -0.617 5.617 15 C 0.360 3.640 16 N -0.539 5.539 17 C -0.270 4.270 18 H 0.060 0.940 19 C 0.040 3.960 20 N -0.886 5.886 21 Si 0.902 3.098 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.274 1.274 25 C 0.113 3.887 26 C -0.193 4.193 27 C -0.215 4.215 28 C 0.099 3.901 29 H 0.089 0.911 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.089 0.911 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.406 0.594 39 H 0.097 0.903 40 H 0.099 0.901 41 H 0.051 0.949 42 H 0.125 0.875 43 H 0.258 0.742 44 H 0.084 0.916 45 H 0.098 0.902 46 H 0.073 0.927 47 H 0.070 0.930 48 H 0.094 0.906 49 H 0.080 0.920 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.526 -0.940 21.906 22.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.100 3.900 3 C -0.241 4.241 4 C -0.198 4.198 5 O -0.281 6.281 6 C 0.404 3.596 7 O -0.451 6.451 8 N -0.359 5.359 9 C 0.049 3.951 10 H 0.129 0.871 11 C -0.213 4.213 12 C 0.303 3.697 13 O -0.385 6.385 14 N -0.358 5.358 15 C 0.154 3.846 16 N -0.257 5.257 17 C -0.399 4.399 18 H 0.078 0.922 19 C -0.162 4.162 20 N -0.527 5.527 21 Si 0.730 3.270 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.200 1.200 25 C 0.005 3.995 26 C -0.231 4.231 27 C -0.256 4.256 28 C -0.027 4.027 29 H 0.108 0.892 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.108 0.892 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.098 0.902 38 H 0.242 0.758 39 H 0.115 0.885 40 H 0.117 0.883 41 H 0.069 0.931 42 H 0.142 0.858 43 H 0.067 0.933 44 H 0.102 0.898 45 H 0.116 0.884 46 H 0.092 0.908 47 H 0.088 0.912 48 H 0.112 0.888 49 H 0.098 0.902 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.641 -0.645 21.239 21.985 hybrid contribution -0.535 0.008 -0.069 0.540 sum 5.106 -0.636 21.170 21.786 Atomic orbital electron populations 1.22526 0.93945 1.02979 1.04725 1.22056 0.94410 0.92196 0.81346 1.22524 1.01526 0.95361 1.04721 1.21861 1.02213 1.01125 0.94566 1.86292 1.71640 1.56467 1.13713 1.18051 0.78848 0.81604 0.81049 1.90926 1.40718 1.26610 1.86896 1.44702 1.55515 1.32740 1.02931 1.21817 0.93961 0.99665 0.79668 0.87149 1.22891 0.98701 1.03544 0.96182 1.20476 0.83723 0.76442 0.89097 1.90748 1.41946 1.48620 1.57169 1.50326 1.05924 1.71406 1.08118 1.21323 0.98331 0.88305 0.76592 1.43936 1.08338 1.16358 1.57022 1.18807 1.04169 0.95609 1.21285 0.92218 1.25088 0.99271 0.97379 0.94471 1.69916 1.34676 1.11446 1.36630 0.86404 0.85188 0.77273 0.78091 1.21127 1.21662 1.19987 1.21301 0.90591 0.94280 0.93348 1.23017 1.02602 0.91833 1.05671 1.23322 0.96306 1.05143 1.00813 1.22109 0.93996 1.00587 0.85973 0.89197 0.91208 0.92161 0.91203 0.92179 0.89227 0.91485 0.91489 0.90188 0.75817 0.88476 0.88279 0.93107 0.85766 0.93258 0.89820 0.88364 0.90841 0.91198 0.88796 0.90217 0.91575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.72 8.37 37.16 0.31 -1.41 16 2 C 0.14 1.25 1.13 -90.62 -0.10 1.15 16 3 C -0.18 -1.67 8.37 37.16 0.31 -1.36 16 4 C -0.14 -0.90 8.85 37.16 0.33 -0.57 16 5 O -0.37 -3.97 9.94 -40.33 -0.40 -4.37 16 6 C 0.65 8.01 8.05 54.05 0.44 8.44 16 7 O -0.56 -8.33 11.62 -19.28 -0.22 -8.55 16 8 N -0.70 -7.37 5.19 -57.14 -0.30 -7.67 16 9 C 0.15 1.96 3.43 -66.30 -0.23 1.73 16 10 H 0.11 1.56 7.72 -51.93 -0.40 1.16 16 11 C -0.17 -2.61 6.59 -26.74 -0.18 -2.79 16 12 C 0.52 10.57 8.02 -10.86 -0.09 10.49 16 13 O -0.51 -13.13 17.59 5.55 0.10 -13.03 16 14 N -0.62 -11.50 3.17 -176.12 -0.56 -12.06 16 15 C 0.36 7.94 6.12 -63.76 -0.39 7.55 16 16 N -0.54 -12.75 2.99 -169.35 -0.51 -13.25 16 17 C -0.27 -7.28 8.47 -15.06 -0.13 -7.40 16 18 H 0.06 1.66 6.75 -52.49 -0.35 1.30 16 19 C 0.04 1.11 4.98 -17.43 -0.09 1.03 16 20 N -0.89 -25.29 11.49 55.49 0.64 -24.65 16 21 Si 0.90 23.19 29.60 -169.99 -5.03 18.16 16 22 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 23 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 24 H -0.27 -7.35 7.11 56.52 0.40 -6.95 16 25 C 0.11 2.28 6.56 -67.93 -0.45 1.84 16 26 C -0.19 -3.72 9.80 -26.73 -0.26 -3.98 16 27 C -0.22 -4.20 10.36 -26.73 -0.28 -4.47 16 28 C 0.10 1.29 7.07 -3.12 -0.02 1.27 16 29 H 0.09 1.07 5.88 -51.93 -0.31 0.77 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.09 1.04 5.88 -51.93 -0.31 0.74 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.41 3.24 8.48 -40.82 -0.35 2.90 16 39 H 0.10 1.32 8.08 -51.93 -0.42 0.90 16 40 H 0.10 1.59 8.14 -51.93 -0.42 1.16 16 41 H 0.05 1.01 8.07 -51.92 -0.42 0.59 16 42 H 0.13 3.27 5.38 -51.93 -0.28 2.99 16 43 H 0.26 7.24 8.32 -40.82 -0.34 6.90 16 44 H 0.08 1.46 7.62 -51.93 -0.40 1.07 16 45 H 0.10 2.12 6.47 -51.93 -0.34 1.78 16 46 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 47 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 48 H 0.09 2.12 8.14 -51.93 -0.42 1.70 16 49 H 0.08 1.01 7.62 -51.93 -0.40 0.61 16 50 H 0.07 0.69 7.77 -51.93 -0.40 0.28 16 LS Contribution 402.68 15.07 6.07 6.07 Total: -1.00 -32.68 402.68 -9.18 -41.86 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -8.15 Total: 5.98 kcal Atomic # 6 Polarization: 12.33 SS G_CDS: -0.82 Total: 11.52 kcal Atomic # 7 Polarization: -56.91 SS G_CDS: -0.72 Total: -57.63 kcal Atomic # 8 Polarization: -25.43 SS G_CDS: -0.53 Total: -25.96 kcal Atomic # 14 Polarization: 23.19 SS G_CDS: -5.03 Total: 18.16 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.68 -9.18 -41.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495125311.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.742 kcal (2) G-P(sol) polarization free energy of solvation -32.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds