Wall clock time and date at job start Sat Apr 11 2020 05:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47078 * 2 1 4 4 C 1.53001 * 109.47450 * 240.00481 * 2 1 3 5 5 O 1.45195 * 109.47298 * 119.99947 * 2 1 3 6 6 C 1.34635 * 116.99770 * 60.00149 * 5 2 1 7 7 O 1.21512 * 120.00384 * 0.02562 * 6 5 2 8 8 N 1.34782 * 120.00266 * 180.02562 * 6 5 2 9 9 C 1.46542 * 119.73915 * 0.02562 * 8 6 5 10 10 C 1.53185 * 108.22094 * 236.45254 * 9 8 6 11 11 C 1.53066 * 109.21745 * 301.55141 * 10 9 8 12 12 H 1.09006 * 114.39193 * 275.11562 * 11 10 9 13 13 C 1.54100 * 111.37211 * 142.60798 * 11 10 9 14 14 N 1.47698 * 87.55251 * 273.84260 * 13 11 10 15 15 C 1.46898 * 111.00104 * 220.17901 * 14 13 11 16 16 C 1.50698 * 109.47559 * 294.38527 * 15 14 13 17 17 O 1.21300 * 119.99659 * 353.82088 * 16 15 14 18 18 N 1.34775 * 120.00140 * 173.82641 * 16 15 14 19 19 C 1.37104 * 119.99635 * 180.02562 * 18 16 15 20 20 H 1.07996 * 120.00364 * 359.97438 * 19 18 16 21 21 C 1.38950 * 119.99771 * 180.02562 * 19 18 16 22 22 N 1.31417 * 119.99995 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00102 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47509 * 59.99641 * 23 21 19 25 25 H 1.48504 * 109.47496 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.47076 * 299.99608 * 23 21 19 27 27 C 1.46871 * 86.86511 * 331.49310 * 14 13 11 28 28 H 1.08994 * 111.44312 * 276.27267 * 27 14 13 29 29 C 1.45700 * 119.74732 * 180.02562 * 8 6 5 30 30 H 1.08991 * 109.47162 * 299.99664 * 1 2 3 31 31 H 1.09003 * 109.46835 * 60.00046 * 1 2 3 32 32 H 1.08999 * 109.46567 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47164 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.47338 * 300.00388 * 3 2 1 35 35 H 1.09004 * 109.46570 * 60.00133 * 3 2 1 36 36 H 1.09006 * 109.46739 * 299.99712 * 4 2 1 37 37 H 1.08996 * 109.46926 * 59.99637 * 4 2 1 38 38 H 1.08996 * 109.47117 * 180.02562 * 4 2 1 39 39 H 1.09001 * 109.71480 * 356.13377 * 9 8 6 40 40 H 1.08993 * 109.70871 * 116.72301 * 9 8 6 41 41 H 1.08996 * 109.51193 * 181.62854 * 10 9 8 42 42 H 1.09003 * 109.52077 * 61.47347 * 10 9 8 43 43 H 1.08997 * 113.53994 * 159.17478 * 13 11 10 44 44 H 1.08998 * 113.53969 * 28.51400 * 13 11 10 45 45 H 1.08999 * 109.47547 * 174.37930 * 15 14 13 46 46 H 1.09000 * 109.46909 * 54.38306 * 15 14 13 47 47 H 0.96995 * 120.00031 * 359.97438 * 18 16 15 48 48 H 0.96998 * 119.99872 * 180.02562 * 22 21 19 49 49 H 1.09003 * 108.78191 * 19.14191 * 29 8 6 50 50 H 1.08997 * 108.69314 * 260.87171 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7211 -1.2493 5 8 2.0140 -0.6844 1.1855 6 6 1.6523 -1.9723 1.3382 7 8 0.9517 -2.5097 0.5035 8 7 2.0672 -2.6655 2.4171 9 6 2.9115 -2.0116 3.4206 10 6 4.1986 -2.8288 3.5696 11 6 3.8424 -4.2591 3.9822 12 1 3.7071 -4.3977 5.0549 13 6 4.7699 -5.2865 3.3047 14 7 3.8463 -5.2658 2.1523 15 6 3.6541 -6.6163 1.6073 16 6 4.9533 -7.1139 1.0282 17 8 5.9118 -6.3733 0.9639 18 7 5.0502 -8.3818 0.5815 19 6 6.2324 -8.8346 0.0551 20 1 7.0858 -8.1753 -0.0020 21 6 6.3322 -10.1416 -0.4059 22 7 5.2936 -10.9438 -0.3369 23 14 7.9427 -10.7584 -1.1238 24 1 9.0126 -10.6568 -0.0991 25 1 7.7889 -12.1758 -1.5392 26 1 8.3070 -9.9332 -2.3034 27 6 2.7859 -4.9293 3.1112 28 1 2.3822 -5.8221 3.5885 29 6 1.6729 -4.0590 2.5765 30 1 -0.3633 0.5137 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0277 -0.0005 33 1 3.1299 1.4426 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6766 1.9563 0.8901 36 1 1.6768 -1.7489 -1.2493 37 1 1.6767 -0.2073 -2.1392 38 1 3.1300 -0.7215 -1.2490 39 1 3.1539 -1.0001 3.0946 40 1 2.3863 -1.9743 4.3749 41 1 4.8308 -2.3762 4.3335 42 1 4.7312 -2.8462 2.6186 43 1 4.8038 -6.2474 3.8181 44 1 5.7606 -4.8940 3.0757 45 1 2.8950 -6.5881 0.8256 46 1 3.3308 -7.2868 2.4036 47 1 4.2839 -8.9741 0.6331 48 1 5.3634 -11.8563 -0.6584 49 1 1.3579 -4.4476 1.6080 50 1 0.8290 -4.1067 3.2647 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496228087.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:28 Heat of formation + Delta-G solvation = -70.653221 kcal Electronic energy + Delta-G solvation = -30997.756099 eV Core-core repulsion = 26833.615654 eV Total energy + Delta-G solvation = -4164.140445 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.35812 -40.43796 -38.06957 -37.30417 -35.69653 -34.04523 -33.85907 -32.25409 -31.23048 -30.10386 -28.06455 -27.57326 -27.46830 -25.73981 -24.09732 -23.54036 -22.67994 -21.59851 -19.67917 -19.28627 -18.47597 -18.00143 -17.69252 -16.72041 -16.29066 -16.02644 -15.87212 -15.49293 -14.89349 -14.75954 -14.56829 -14.31072 -13.98896 -13.84149 -13.70640 -13.66177 -13.48746 -13.00611 -12.67666 -12.48594 -12.32147 -12.11963 -12.04835 -12.01100 -11.91164 -11.77361 -11.55200 -11.50954 -11.36749 -11.21961 -11.04582 -10.85552 -10.52354 -10.44576 -10.42550 -10.24284 -10.17714 -9.95978 -9.48795 -8.76635 -8.61317 -8.26059 -7.96048 -6.41348 -3.82245 2.11203 2.88357 3.20059 3.25675 3.30112 3.76092 3.90712 3.99956 4.19667 4.30955 4.57945 4.62305 4.66718 4.77063 4.86675 5.00383 5.04505 5.16714 5.23297 5.26345 5.29443 5.34949 5.39685 5.44945 5.46364 5.51892 5.55432 5.61793 5.65171 5.69739 5.73632 5.74887 5.82779 5.86039 5.92602 6.02739 6.14647 6.21983 6.27024 6.29432 6.40284 6.43131 6.50089 6.63683 7.26468 7.35106 7.55104 8.05705 8.36648 8.61619 9.18001 9.54288 10.06046 10.76392 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015338 B = 0.002612 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.059053 B =10718.599712 C =11538.905263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.136 3.864 3 C -0.140 4.140 4 C -0.184 4.184 5 O -0.363 6.363 6 C 0.655 3.345 7 O -0.568 6.568 8 N -0.580 5.580 9 C 0.115 3.885 10 C -0.112 4.112 11 C -0.112 4.112 12 H 0.088 0.912 13 C 0.016 3.984 14 N -0.432 5.432 15 C 0.007 3.993 16 C 0.444 3.556 17 O -0.579 6.579 18 N -0.564 5.564 19 C -0.299 4.299 20 H 0.102 0.898 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.931 3.069 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.273 1.273 27 C 0.013 3.987 28 H 0.083 0.917 29 C 0.148 3.852 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.088 0.912 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.089 0.911 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.092 0.908 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.084 0.916 43 H 0.065 0.935 44 H 0.093 0.907 45 H 0.091 0.909 46 H 0.054 0.946 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.096 0.904 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.406 20.169 8.628 24.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.099 3.901 3 C -0.197 4.197 4 C -0.241 4.241 5 O -0.278 6.278 6 C 0.410 3.590 7 O -0.458 6.458 8 N -0.319 5.319 9 C -0.008 4.008 10 C -0.150 4.150 11 C -0.131 4.131 12 H 0.106 0.894 13 C -0.112 4.112 14 N -0.154 5.154 15 C -0.125 4.125 16 C 0.229 3.771 17 O -0.463 6.463 18 N -0.201 5.201 19 C -0.429 4.429 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.098 4.098 28 H 0.100 0.900 29 C 0.026 3.974 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.106 0.894 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.108 0.892 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.110 0.890 40 H 0.086 0.914 41 H 0.095 0.905 42 H 0.102 0.898 43 H 0.083 0.917 44 H 0.112 0.888 45 H 0.110 0.890 46 H 0.072 0.928 47 H 0.225 0.775 48 H 0.082 0.918 49 H 0.114 0.886 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.872 20.735 7.580 24.183 hybrid contribution 0.090 -1.655 0.155 1.664 sum -9.782 19.080 7.735 22.794 Atomic orbital electron populations 1.22505 0.94186 1.05045 1.02184 1.22037 0.94175 0.91444 0.82413 1.21850 1.02351 0.92615 1.02870 1.22515 1.01845 1.03604 0.96174 1.86265 1.71574 1.23811 1.46194 1.17904 0.78956 0.80517 0.81664 1.90884 1.41730 1.70246 1.42906 1.46316 1.52959 1.11317 1.21340 1.21589 0.91025 0.96747 0.91423 1.21689 0.96937 0.93164 1.03194 1.22536 0.96615 0.95634 0.98351 0.89356 1.23871 0.98888 0.97797 0.90685 1.68979 1.04137 1.22581 1.19719 1.22535 0.98722 0.90748 1.00501 1.19658 0.89266 0.83258 0.84915 1.90524 1.39253 1.55922 1.60606 1.41866 1.13923 1.10099 1.54170 1.19641 0.90884 0.96085 1.36253 0.88025 1.25261 0.98923 0.95946 0.97798 1.69607 1.29933 1.07479 1.47330 0.85919 0.81365 0.77498 0.79445 1.19928 1.20955 1.19878 1.23109 0.93884 0.98608 0.94180 0.89953 1.20533 0.95035 0.78634 1.03212 0.92389 0.91304 0.89351 0.91416 0.90273 0.91648 0.89222 0.91353 0.92000 0.88953 0.91366 0.90543 0.89757 0.91705 0.88834 0.89046 0.92792 0.77498 0.91815 0.88564 0.91594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.82 8.37 37.16 0.31 -1.51 16 2 C 0.14 1.46 1.13 -90.62 -0.10 1.36 16 3 C -0.14 -1.08 8.85 37.16 0.33 -0.75 16 4 C -0.18 -2.15 8.37 37.16 0.31 -1.84 16 5 O -0.36 -4.61 8.43 -40.31 -0.34 -4.95 16 6 C 0.65 9.40 7.69 54.06 0.42 9.82 16 7 O -0.57 -9.40 11.25 -19.28 -0.22 -9.61 16 8 N -0.58 -7.32 2.99 -181.15 -0.54 -7.86 16 9 C 0.11 1.14 6.40 -3.92 -0.03 1.11 16 10 C -0.11 -1.20 5.69 -26.60 -0.15 -1.35 16 11 C -0.11 -1.27 4.55 -90.29 -0.41 -1.68 16 12 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 13 C 0.02 0.25 5.68 -10.47 -0.06 0.19 16 14 N -0.43 -7.27 5.78 -248.44 -1.44 -8.70 16 15 C 0.01 0.13 5.48 -4.98 -0.03 0.10 16 16 C 0.44 10.70 7.46 -10.99 -0.08 10.61 16 17 O -0.58 -15.91 14.96 5.54 0.08 -15.83 16 18 N -0.56 -14.56 5.29 -10.96 -0.06 -14.62 16 19 C -0.30 -8.46 9.68 -14.93 -0.14 -8.60 16 20 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 21 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 22 N -0.90 -24.84 13.05 55.50 0.72 -24.12 16 23 Si 0.93 21.32 29.55 -169.99 -5.02 16.30 16 24 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 26 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 27 C 0.01 0.16 3.09 -76.65 -0.24 -0.08 16 28 H 0.08 0.92 7.50 -51.93 -0.39 0.53 16 29 C 0.15 1.83 6.23 -5.45 -0.03 1.79 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.09 1.11 5.88 -51.93 -0.31 0.80 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.09 1.31 5.88 -51.93 -0.31 1.00 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.09 0.88 6.82 -51.93 -0.35 0.53 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.08 1.18 7.68 -51.93 -0.40 0.78 16 43 H 0.06 0.99 7.86 -51.93 -0.41 0.58 16 44 H 0.09 1.64 7.84 -51.93 -0.41 1.23 16 45 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 46 H 0.05 0.87 7.46 -51.93 -0.39 0.48 16 47 H 0.39 9.69 7.90 -40.82 -0.32 9.37 16 48 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 49 H 0.10 1.41 7.04 -51.93 -0.37 1.04 16 50 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 391.84 15.07 5.90 5.90 Total: -1.00 -33.38 391.84 -9.13 -42.52 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: -8.23 Total: 11.29 kcal Atomic # 6 Polarization: 9.68 SS G_CDS: 0.00 Total: 9.68 kcal Atomic # 7 Polarization: -53.99 SS G_CDS: -1.31 Total: -55.30 kcal Atomic # 8 Polarization: -29.92 SS G_CDS: -0.47 Total: -30.39 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.38 -9.13 -42.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496228087.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.138 kcal (2) G-P(sol) polarization free energy of solvation -33.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds