Wall clock time and date at job start Sat Apr 11 2020 05:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.20756 * 120.00523 * 2 1 4 4 C 1.50701 * 119.99679 * 180.02562 * 2 1 3 5 5 H 1.09007 * 109.47429 * 38.66428 * 4 2 1 6 6 N 1.46505 * 109.47146 * 158.66313 * 4 2 1 7 7 C 1.34770 * 119.99949 * 275.00263 * 6 4 2 8 8 O 1.21280 * 120.00511 * 359.97438 * 7 6 4 9 9 C 1.50708 * 119.99766 * 180.02562 * 7 6 4 10 10 N 1.46902 * 109.47128 * 179.97438 * 9 7 6 11 11 C 1.46894 * 110.99850 * 169.99921 * 10 9 7 12 12 C 1.53242 * 109.33879 * 187.25436 * 11 10 9 13 13 N 1.47081 * 108.52096 * 306.17183 * 12 11 10 14 14 C 1.34776 * 120.87982 * 231.18952 * 13 12 11 15 15 O 1.21691 * 120.00059 * 355.16648 * 14 13 12 16 16 C 1.46373 * 120.00343 * 175.16437 * 14 13 12 17 17 H 1.08009 * 119.99723 * 11.95807 * 16 14 13 18 18 C 1.40040 * 120.00548 * 191.95999 * 16 14 13 19 19 N 1.30666 * 120.00350 * 188.51497 * 18 16 14 20 20 Si 1.86807 * 119.99897 * 8.51129 * 18 16 14 21 21 H 1.48498 * 109.46892 * 274.24822 * 20 18 16 22 22 H 1.48499 * 109.47060 * 34.25034 * 20 18 16 23 23 H 1.48500 * 109.47132 * 154.24656 * 20 18 16 24 24 C 1.47074 * 118.23887 * 51.45166 * 13 12 11 25 25 C 1.46897 * 110.99643 * 294.30193 * 10 9 7 26 26 C 1.53003 * 109.47179 * 278.66504 * 4 2 1 27 27 C 1.52996 * 109.47003 * 178.81038 * 26 4 2 28 28 C 1.52996 * 109.46932 * 298.80694 * 26 4 2 29 29 H 1.09000 * 109.47142 * 274.91363 * 1 2 3 30 30 H 1.09004 * 109.47312 * 34.90881 * 1 2 3 31 31 H 1.08995 * 109.47605 * 154.90925 * 1 2 3 32 32 H 0.96996 * 119.99387 * 94.99816 * 6 4 2 33 33 H 1.08997 * 109.47256 * 59.99654 * 9 7 6 34 34 H 1.09000 * 109.46929 * 299.99762 * 9 7 6 35 35 H 1.08997 * 109.49544 * 67.29133 * 11 10 9 36 36 H 1.09005 * 109.51550 * 307.22195 * 11 10 9 37 37 H 1.09002 * 109.62760 * 186.45833 * 12 11 10 38 38 H 1.08995 * 109.63089 * 65.87776 * 12 11 10 39 39 H 0.97002 * 120.00320 * 180.02562 * 19 18 16 40 40 H 1.09005 * 109.62302 * 68.26073 * 24 13 12 41 41 H 1.09003 * 109.62997 * 188.83226 * 24 13 12 42 42 H 1.08999 * 109.49128 * 292.70317 * 25 10 9 43 43 H 1.08997 * 109.49728 * 52.78736 * 25 10 9 44 44 H 1.08994 * 109.46638 * 58.80878 * 26 4 2 45 45 H 1.09000 * 109.47365 * 180.02562 * 27 26 4 46 46 H 1.09007 * 109.47328 * 299.99900 * 27 26 4 47 47 H 1.08998 * 109.47552 * 59.99645 * 27 26 4 48 48 H 1.09003 * 109.46911 * 61.63534 * 28 26 4 49 49 H 1.09000 * 109.47108 * 181.63288 * 28 26 4 50 50 H 1.08993 * 109.47437 * 301.63344 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0457 0.0000 4 6 2.2604 -1.3052 -0.0006 5 1 1.7471 -2.0208 -0.6430 6 7 3.6188 -1.0846 -0.5031 7 6 3.8566 -1.0953 -1.8296 8 8 2.9462 -1.2879 -2.6074 9 6 5.2541 -0.8691 -2.3464 10 7 5.2490 -0.9289 -3.8142 11 6 6.5358 -0.4815 -4.3637 12 6 6.4302 -0.3857 -5.8895 13 7 5.9480 -1.6755 -6.4063 14 6 6.5990 -2.3087 -7.4021 15 8 7.5475 -1.7740 -7.9456 16 6 6.1653 -3.6396 -7.8300 17 1 5.2186 -4.0340 -7.4910 18 6 6.9776 -4.4016 -8.6789 19 7 6.5230 -5.5130 -9.1943 20 14 8.7112 -3.8292 -9.0746 21 1 8.6714 -2.8852 -10.2202 22 1 9.2893 -3.1458 -7.8897 23 1 9.5510 -5.0018 -9.4283 24 6 4.7332 -2.2532 -5.8115 25 6 4.9088 -2.2782 -4.2848 26 6 2.3272 -1.8562 1.4252 27 6 3.0663 -3.1957 1.4202 28 6 3.0737 -0.8652 2.3204 29 1 -0.3633 0.0880 1.0239 30 1 -0.3634 0.8428 -0.5881 31 1 -0.3634 -0.9306 -0.4357 32 1 4.3469 -0.9309 0.1191 33 1 5.9161 -1.6410 -1.9539 34 1 5.6067 0.1105 -2.0235 35 1 7.3137 -1.1969 -4.0970 36 1 6.7859 0.4973 -3.9543 37 1 7.4110 -0.1658 -6.3112 38 1 5.7274 0.4025 -6.1592 39 1 7.0858 -6.0410 -9.7820 40 1 3.8704 -1.6409 -6.0740 41 1 4.5913 -3.2685 -6.1818 42 1 5.7094 -2.9686 -4.0193 43 1 3.9787 -2.6024 -3.8182 44 1 1.3164 -2.0003 1.8066 45 1 3.1135 -3.5885 2.4358 46 1 2.5344 -3.9018 0.7823 47 1 4.0771 -3.0516 1.0386 48 1 2.5316 0.0801 2.3471 49 1 3.1467 -1.2708 3.3295 50 1 4.0747 -0.6988 1.9225 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570407893.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:53 Heat of formation + Delta-G solvation = -102.791393 kcal Electronic energy + Delta-G solvation = -30588.493047 eV Core-core repulsion = 26422.958987 eV Total energy + Delta-G solvation = -4165.534060 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.87006 -39.45832 -38.51158 -37.02860 -36.45972 -33.62162 -33.28421 -32.80686 -31.01146 -30.70474 -29.01311 -27.72637 -27.18723 -26.38439 -24.35439 -23.12951 -21.45791 -21.10941 -20.68419 -19.60348 -18.82136 -17.40523 -16.93615 -16.72024 -16.36398 -16.01750 -15.51644 -15.32049 -15.09217 -14.79769 -14.75202 -14.46325 -14.38316 -14.21323 -13.97952 -13.73345 -13.57065 -13.20771 -12.92423 -12.80014 -12.57476 -12.45868 -12.36048 -12.24573 -11.99414 -11.81836 -11.76803 -11.51016 -11.43235 -11.37957 -11.00319 -10.82700 -10.67733 -10.66520 -10.40548 -10.33814 -9.76722 -9.37012 -9.13735 -9.00081 -8.22971 -7.83796 -7.42790 -6.58916 -4.80165 1.61005 2.50865 2.75999 3.47434 3.51789 3.68983 3.76779 3.99777 4.13679 4.22557 4.32420 4.35566 4.45371 4.62511 4.65008 4.73495 4.91772 4.95494 5.06704 5.09170 5.11056 5.16597 5.21528 5.30461 5.33835 5.36285 5.44848 5.49314 5.52625 5.58524 5.72223 5.72811 5.73591 5.76404 5.88325 6.03916 6.12729 6.23854 6.38673 6.48805 6.67798 6.96117 7.11038 7.17800 7.25166 7.30993 7.68073 7.93122 8.09885 8.36209 8.76447 9.19133 10.08463 10.41863 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021289 B = 0.002378 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.907483 B =11773.963463 C =12038.090503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.347 3.653 3 O -0.446 6.446 4 C 0.103 3.897 5 H 0.116 0.884 6 N -0.720 5.720 7 C 0.518 3.482 8 O -0.514 6.514 9 C 0.038 3.962 10 N -0.520 5.520 11 C 0.045 3.955 12 C 0.126 3.874 13 N -0.635 5.635 14 C 0.554 3.446 15 O -0.618 6.618 16 C -0.532 4.532 17 H 0.091 0.909 18 C 0.101 3.899 19 N -0.829 5.829 20 Si 0.968 3.032 21 H -0.279 1.279 22 H -0.263 1.263 23 H -0.324 1.324 24 C 0.129 3.871 25 C 0.039 3.961 26 C -0.095 4.095 27 C -0.146 4.146 28 C -0.155 4.155 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.402 0.598 33 H 0.061 0.939 34 H 0.102 0.898 35 H 0.037 0.963 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.055 0.945 39 H 0.281 0.719 40 H 0.056 0.944 41 H 0.100 0.900 42 H 0.032 0.968 43 H 0.093 0.907 44 H 0.091 0.909 45 H 0.062 0.938 46 H 0.061 0.939 47 H 0.059 0.941 48 H 0.058 0.942 49 H 0.065 0.935 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.762 6.073 26.793 29.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C 0.220 3.780 3 O -0.319 6.319 4 C -0.004 4.004 5 H 0.134 0.866 6 N -0.375 5.375 7 C 0.304 3.696 8 O -0.388 6.388 9 C -0.094 4.094 10 N -0.245 5.245 11 C -0.083 4.083 12 C 0.001 3.999 13 N -0.369 5.369 14 C 0.363 3.637 15 O -0.511 6.511 16 C -0.568 4.568 17 H 0.108 0.892 18 C -0.117 4.117 19 N -0.459 5.459 20 Si 0.801 3.199 21 H -0.205 1.205 22 H -0.189 1.189 23 H -0.255 1.255 24 C 0.005 3.995 25 C -0.089 4.089 26 C -0.114 4.114 27 C -0.204 4.204 28 C -0.212 4.212 29 H 0.113 0.887 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.238 0.762 33 H 0.079 0.921 34 H 0.120 0.880 35 H 0.055 0.945 36 H 0.095 0.905 37 H 0.106 0.894 38 H 0.073 0.927 39 H 0.091 0.909 40 H 0.074 0.926 41 H 0.118 0.882 42 H 0.051 0.949 43 H 0.111 0.889 44 H 0.109 0.891 45 H 0.081 0.919 46 H 0.080 0.920 47 H 0.078 0.922 48 H 0.077 0.923 49 H 0.084 0.916 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.013 6.908 25.642 28.382 hybrid contribution 1.411 -0.335 0.531 1.545 sum -8.602 6.573 26.174 28.324 Atomic orbital electron populations 1.22279 0.94077 1.05300 1.04463 1.25098 0.92206 0.90507 0.70151 1.90402 1.71954 1.34801 1.34694 1.21532 0.84851 0.96798 0.97219 0.86601 1.45847 1.09380 1.74806 1.07420 1.20703 0.91544 0.75752 0.81563 1.90696 1.45874 1.46738 1.55444 1.21918 0.93286 1.03130 0.91032 1.61665 1.31386 1.26938 1.04488 1.22551 0.88963 0.99792 0.97001 1.21278 1.00765 0.87253 0.90570 1.47757 1.28765 1.21553 1.38837 1.18324 0.81031 0.86509 0.77804 1.90188 1.33200 1.68499 1.59209 1.20791 1.07799 0.98802 1.29412 0.89159 1.25772 1.01396 0.93138 0.91375 1.69563 1.38276 1.13103 1.24957 0.85210 0.79889 0.74500 0.80328 1.20539 1.18870 1.25541 1.21648 0.87386 1.00532 0.89935 1.22793 1.01026 0.87435 0.97679 1.21293 1.01669 0.96305 0.92098 1.21825 1.00805 0.95447 1.02304 1.21923 1.00666 0.98938 0.99696 0.88697 0.89358 0.89497 0.76246 0.92081 0.87973 0.94482 0.90504 0.89363 0.92700 0.90859 0.92565 0.88195 0.94928 0.88915 0.89055 0.91943 0.91983 0.92178 0.92301 0.91645 0.92321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.22 10.27 36.00 0.37 -0.85 16 2 C 0.35 3.11 5.41 -29.04 -0.16 2.95 16 3 O -0.45 -5.56 16.98 6.00 0.10 -5.46 16 4 C 0.10 0.77 2.01 -69.08 -0.14 0.63 16 5 H 0.12 0.94 7.56 -51.93 -0.39 0.55 16 6 N -0.72 -6.26 3.91 -54.92 -0.21 -6.47 16 7 C 0.52 6.32 7.45 -10.98 -0.08 6.24 16 8 O -0.51 -8.16 13.99 5.56 0.08 -8.08 16 9 C 0.04 0.44 5.45 -4.97 -0.03 0.41 16 10 N -0.52 -8.01 4.37 -235.46 -1.03 -9.04 16 11 C 0.05 0.70 5.62 -3.70 -0.02 0.68 16 12 C 0.13 2.42 6.58 -3.60 -0.02 2.40 16 13 N -0.63 -14.46 3.00 -173.84 -0.52 -14.98 16 14 C 0.55 15.18 7.35 -12.99 -0.10 15.09 16 15 O -0.62 -18.30 11.70 5.20 0.06 -18.24 16 16 C -0.53 -15.28 9.37 -35.64 -0.33 -15.62 16 17 H 0.09 2.57 5.99 -52.48 -0.31 2.26 16 18 C 0.10 2.92 5.52 -17.37 -0.10 2.83 16 19 N -0.83 -23.87 13.92 55.55 0.77 -23.09 16 20 Si 0.97 25.96 25.92 -169.99 -4.41 21.55 16 21 H -0.28 -7.70 7.11 56.52 0.40 -7.29 16 22 H -0.26 -7.38 6.53 56.52 0.37 -7.01 16 23 H -0.32 -8.20 7.11 56.52 0.40 -7.80 16 24 C 0.13 2.58 6.54 -3.37 -0.02 2.56 16 25 C 0.04 0.66 5.27 -3.46 -0.02 0.64 16 26 C -0.09 -0.45 2.75 -90.62 -0.25 -0.70 16 27 C -0.15 -0.69 9.05 37.16 0.34 -0.35 16 28 C -0.15 -0.75 8.76 37.16 0.33 -0.42 16 29 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.09 0.40 8.08 -51.93 -0.42 -0.02 16 32 H 0.40 2.64 6.63 -40.82 -0.27 2.37 16 33 H 0.06 0.61 8.12 -51.93 -0.42 0.19 16 34 H 0.10 1.00 7.97 -51.93 -0.41 0.59 16 35 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.97 7.99 -51.93 -0.41 0.56 16 37 H 0.09 1.81 7.09 -51.93 -0.37 1.44 16 38 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.28 7.45 8.29 -40.82 -0.34 7.11 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.10 2.12 5.40 -51.93 -0.28 1.84 16 42 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.09 1.54 5.76 -51.93 -0.30 1.24 16 44 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 46 H 0.06 0.32 8.14 -51.92 -0.42 -0.10 16 47 H 0.06 0.31 7.53 -51.93 -0.39 -0.08 16 48 H 0.06 0.35 7.08 -51.93 -0.37 -0.01 16 49 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 50 H 0.06 0.28 6.39 -51.93 -0.33 -0.05 16 LS Contribution 393.24 15.07 5.93 5.93 Total: -1.00 -36.84 393.24 -7.55 -44.39 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -8.08 Total: -3.00 kcal Atomic # 6 Polarization: 16.74 SS G_CDS: -0.23 Total: 16.50 kcal Atomic # 7 Polarization: -52.60 SS G_CDS: -0.99 Total: -53.59 kcal Atomic # 8 Polarization: -32.02 SS G_CDS: 0.24 Total: -31.78 kcal Atomic # 14 Polarization: 25.96 SS G_CDS: -4.41 Total: 21.55 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.84 -7.55 -44.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570407893.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.401 kcal (2) G-P(sol) polarization free energy of solvation -36.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds