Wall clock time and date at job start Sat Apr 11 2020 05:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.20756 * 120.00523 * 2 1 4 4 C 1.50701 * 119.99679 * 180.02562 * 2 1 3 5 5 H 1.09007 * 109.47429 * 38.66428 * 4 2 1 6 6 N 1.46505 * 109.47146 * 158.66313 * 4 2 1 7 7 C 1.34770 * 119.99949 * 275.00263 * 6 4 2 8 8 O 1.21280 * 120.00511 * 359.97438 * 7 6 4 9 9 C 1.50708 * 119.99766 * 180.02562 * 7 6 4 10 10 N 1.46902 * 109.47128 * 179.97438 * 9 7 6 11 11 C 1.46894 * 110.99850 * 169.99921 * 10 9 7 12 12 C 1.53242 * 109.33879 * 187.25436 * 11 10 9 13 13 N 1.47081 * 108.52096 * 306.17183 * 12 11 10 14 14 C 1.34776 * 120.87982 * 231.18952 * 13 12 11 15 15 O 1.21691 * 120.00059 * 355.16648 * 14 13 12 16 16 C 1.46373 * 120.00343 * 175.16437 * 14 13 12 17 17 H 1.08009 * 119.99723 * 11.95807 * 16 14 13 18 18 C 1.40040 * 120.00548 * 191.95999 * 16 14 13 19 19 N 1.30666 * 120.00350 * 188.51497 * 18 16 14 20 20 Si 1.86807 * 119.99897 * 8.51129 * 18 16 14 21 21 H 1.48498 * 109.46892 * 274.24822 * 20 18 16 22 22 H 1.48499 * 109.47060 * 34.25034 * 20 18 16 23 23 H 1.48500 * 109.47132 * 154.24656 * 20 18 16 24 24 C 1.47074 * 118.23887 * 51.45166 * 13 12 11 25 25 C 1.46897 * 110.99643 * 294.30193 * 10 9 7 26 26 C 1.53003 * 109.47179 * 278.66504 * 4 2 1 27 27 C 1.52996 * 109.47003 * 178.81038 * 26 4 2 28 28 C 1.52996 * 109.46932 * 298.80694 * 26 4 2 29 29 H 1.09000 * 109.47142 * 274.91363 * 1 2 3 30 30 H 1.09004 * 109.47312 * 34.90881 * 1 2 3 31 31 H 1.08995 * 109.47605 * 154.90925 * 1 2 3 32 32 H 0.96996 * 119.99387 * 94.99816 * 6 4 2 33 33 H 1.08997 * 109.47256 * 59.99654 * 9 7 6 34 34 H 1.09000 * 109.46929 * 299.99762 * 9 7 6 35 35 H 1.08997 * 109.49544 * 67.29133 * 11 10 9 36 36 H 1.09005 * 109.51550 * 307.22195 * 11 10 9 37 37 H 1.09002 * 109.62760 * 186.45833 * 12 11 10 38 38 H 1.08995 * 109.63089 * 65.87776 * 12 11 10 39 39 H 0.97002 * 120.00320 * 180.02562 * 19 18 16 40 40 H 1.09005 * 109.62302 * 68.26073 * 24 13 12 41 41 H 1.09003 * 109.62997 * 188.83226 * 24 13 12 42 42 H 1.08999 * 109.49128 * 292.70317 * 25 10 9 43 43 H 1.08997 * 109.49728 * 52.78736 * 25 10 9 44 44 H 1.08994 * 109.46638 * 58.80878 * 26 4 2 45 45 H 1.09000 * 109.47365 * 180.02562 * 27 26 4 46 46 H 1.09007 * 109.47328 * 299.99900 * 27 26 4 47 47 H 1.08998 * 109.47552 * 59.99645 * 27 26 4 48 48 H 1.09003 * 109.46911 * 61.63534 * 28 26 4 49 49 H 1.09000 * 109.47108 * 181.63288 * 28 26 4 50 50 H 1.08993 * 109.47437 * 301.63344 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0457 0.0000 4 6 2.2604 -1.3052 -0.0006 5 1 1.7471 -2.0208 -0.6430 6 7 3.6188 -1.0846 -0.5031 7 6 3.8566 -1.0953 -1.8296 8 8 2.9462 -1.2879 -2.6074 9 6 5.2541 -0.8691 -2.3464 10 7 5.2490 -0.9289 -3.8142 11 6 6.5358 -0.4815 -4.3637 12 6 6.4302 -0.3857 -5.8895 13 7 5.9480 -1.6755 -6.4063 14 6 6.5990 -2.3087 -7.4021 15 8 7.5475 -1.7740 -7.9456 16 6 6.1653 -3.6396 -7.8300 17 1 5.2186 -4.0340 -7.4910 18 6 6.9776 -4.4016 -8.6789 19 7 6.5230 -5.5130 -9.1943 20 14 8.7112 -3.8292 -9.0746 21 1 8.6714 -2.8852 -10.2202 22 1 9.2893 -3.1458 -7.8897 23 1 9.5510 -5.0018 -9.4283 24 6 4.7332 -2.2532 -5.8115 25 6 4.9088 -2.2782 -4.2848 26 6 2.3272 -1.8562 1.4252 27 6 3.0663 -3.1957 1.4202 28 6 3.0737 -0.8652 2.3204 29 1 -0.3633 0.0880 1.0239 30 1 -0.3634 0.8428 -0.5881 31 1 -0.3634 -0.9306 -0.4357 32 1 4.3469 -0.9309 0.1191 33 1 5.9161 -1.6410 -1.9539 34 1 5.6067 0.1105 -2.0235 35 1 7.3137 -1.1969 -4.0970 36 1 6.7859 0.4973 -3.9543 37 1 7.4110 -0.1658 -6.3112 38 1 5.7274 0.4025 -6.1592 39 1 7.0858 -6.0410 -9.7820 40 1 3.8704 -1.6409 -6.0740 41 1 4.5913 -3.2685 -6.1818 42 1 5.7094 -2.9686 -4.0193 43 1 3.9787 -2.6024 -3.8182 44 1 1.3164 -2.0003 1.8066 45 1 3.1135 -3.5885 2.4358 46 1 2.5344 -3.9018 0.7823 47 1 4.0771 -3.0516 1.0386 48 1 2.5316 0.0801 2.3471 49 1 3.1467 -1.2708 3.3295 50 1 4.0747 -0.6988 1.9225 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000570407893.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:52 Heat of formation + Delta-G solvation = -130.402786 kcal Electronic energy + Delta-G solvation = -30589.690367 eV Core-core repulsion = 26422.958987 eV Total energy + Delta-G solvation = -4166.731380 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.66393 -40.72974 -39.87870 -38.41307 -37.37456 -35.23382 -35.01649 -34.04907 -32.20410 -31.58158 -30.23705 -28.78063 -28.08691 -27.61072 -25.66556 -24.63720 -22.61233 -21.95342 -21.73848 -20.59809 -20.23373 -18.73481 -18.28971 -18.10097 -17.55767 -17.08856 -16.91676 -16.31362 -16.18982 -16.05717 -15.98616 -15.67483 -15.54890 -15.28354 -15.07928 -15.05773 -14.56558 -14.34725 -14.17602 -13.99626 -13.89455 -13.46717 -13.31788 -13.22704 -13.04833 -13.01354 -12.91893 -12.80205 -12.53311 -12.35343 -12.21805 -12.18752 -12.11594 -11.84328 -11.78862 -11.41291 -11.23980 -11.18754 -10.81985 -9.99534 -9.88834 -9.53643 -9.17375 -8.80586 -7.02994 0.93871 1.31138 1.36007 1.59998 1.60658 1.97101 2.07181 2.32722 2.61458 2.95819 3.11595 3.29369 3.64943 3.77192 3.91724 3.92712 4.04326 4.08021 4.16423 4.23539 4.26642 4.33642 4.44824 4.45824 4.49991 4.55754 4.63247 4.65221 4.67523 4.76175 4.80664 4.85454 4.91853 4.92991 4.98619 5.10287 5.12200 5.13770 5.14716 5.35225 5.39554 5.42261 5.66096 5.85620 5.91378 6.01256 6.22226 6.46921 6.55109 6.60885 7.10906 7.24074 7.95185 8.24874 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021289 B = 0.002378 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.907483 B =11773.963463 C =12038.090503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.345 3.655 3 O -0.488 6.488 4 C 0.098 3.902 5 H 0.112 0.888 6 N -0.706 5.706 7 C 0.515 3.485 8 O -0.558 6.558 9 C 0.037 3.963 10 N -0.532 5.532 11 C 0.057 3.943 12 C 0.119 3.881 13 N -0.635 5.635 14 C 0.550 3.450 15 O -0.645 6.645 16 C -0.552 4.552 17 H 0.083 0.917 18 C 0.069 3.931 19 N -0.848 5.848 20 Si 1.014 2.986 21 H -0.293 1.293 22 H -0.283 1.283 23 H -0.298 1.298 24 C 0.128 3.872 25 C 0.055 3.945 26 C -0.085 4.085 27 C -0.146 4.146 28 C -0.154 4.154 29 H 0.121 0.879 30 H 0.077 0.923 31 H 0.101 0.899 32 H 0.413 0.587 33 H 0.084 0.916 34 H 0.128 0.872 35 H 0.033 0.967 36 H 0.114 0.886 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.292 0.708 40 H 0.057 0.943 41 H 0.082 0.918 42 H 0.028 0.972 43 H 0.098 0.902 44 H 0.112 0.888 45 H 0.075 0.925 46 H 0.056 0.944 47 H 0.053 0.947 48 H 0.045 0.955 49 H 0.079 0.921 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.805 6.334 29.502 31.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C 0.221 3.779 3 O -0.364 6.364 4 C -0.008 4.008 5 H 0.130 0.870 6 N -0.360 5.360 7 C 0.302 3.698 8 O -0.435 6.435 9 C -0.093 4.093 10 N -0.257 5.257 11 C -0.072 4.072 12 C -0.004 4.004 13 N -0.368 5.368 14 C 0.358 3.642 15 O -0.540 6.540 16 C -0.588 4.588 17 H 0.101 0.899 18 C -0.147 4.147 19 N -0.479 5.479 20 Si 0.846 3.154 21 H -0.220 1.220 22 H -0.210 1.210 23 H -0.228 1.228 24 C 0.005 3.995 25 C -0.073 4.073 26 C -0.104 4.104 27 C -0.203 4.203 28 C -0.211 4.211 29 H 0.139 0.861 30 H 0.096 0.904 31 H 0.120 0.880 32 H 0.251 0.749 33 H 0.102 0.898 34 H 0.145 0.855 35 H 0.052 0.948 36 H 0.133 0.867 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.103 0.897 40 H 0.075 0.925 41 H 0.100 0.900 42 H 0.046 0.954 43 H 0.116 0.884 44 H 0.130 0.870 45 H 0.094 0.906 46 H 0.075 0.925 47 H 0.072 0.928 48 H 0.064 0.936 49 H 0.098 0.902 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.076 7.151 28.424 30.993 hybrid contribution 1.321 -0.368 -0.227 1.390 sum -8.755 6.783 28.197 30.294 Atomic orbital electron populations 1.22329 0.91949 1.05661 1.06091 1.25617 0.93615 0.90234 0.68399 1.90390 1.72913 1.36085 1.36974 1.21719 0.83951 0.96227 0.98877 0.87030 1.45745 1.10458 1.73213 1.06572 1.20848 0.91347 0.75282 0.82292 1.90681 1.47018 1.49129 1.56679 1.22036 0.93536 1.05361 0.88372 1.61563 1.31326 1.25611 1.07207 1.22444 0.88906 1.01781 0.94026 1.21502 0.99942 0.85524 0.93407 1.47745 1.28867 1.22518 1.37623 1.18253 0.81004 0.86420 0.78563 1.90159 1.34323 1.69163 1.60317 1.21001 1.07877 0.99846 1.30083 0.89941 1.26274 1.03385 0.93426 0.91579 1.69559 1.39317 1.13522 1.25516 0.84561 0.77831 0.74381 0.78597 1.21997 1.21029 1.22786 1.21694 0.86296 0.99303 0.92235 1.22529 1.01182 0.88615 0.95015 1.21304 1.03012 0.96048 0.90059 1.21821 1.00299 0.95175 1.02989 1.21920 1.00312 0.98375 1.00528 0.86056 0.90377 0.87981 0.74878 0.89800 0.85454 0.94848 0.86748 0.90825 0.91936 0.89727 0.92470 0.90002 0.95403 0.88396 0.86955 0.90629 0.92489 0.92753 0.93554 0.90174 0.92502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.09 10.27 71.23 0.73 -1.36 16 2 C 0.35 5.75 5.41 29.10 0.16 5.91 16 3 O -0.49 -11.84 16.98 -1.44 -0.02 -11.86 16 4 C 0.10 1.32 2.01 44.25 0.09 1.41 16 5 H 0.11 1.67 7.56 -2.38 -0.02 1.65 16 6 N -0.71 -10.98 3.91 -446.07 -1.74 -12.72 16 7 C 0.52 11.70 7.45 87.66 0.65 12.35 16 8 O -0.56 -17.26 13.99 -3.03 -0.04 -17.30 16 9 C 0.04 0.76 5.45 85.56 0.47 1.23 16 10 N -0.53 -15.32 4.37 -898.87 -3.93 -19.25 16 11 C 0.06 1.62 5.62 86.39 0.49 2.11 16 12 C 0.12 4.51 6.58 86.35 0.57 5.07 16 13 N -0.63 -29.05 3.00 -822.12 -2.47 -31.52 16 14 C 0.55 30.60 7.35 86.36 0.63 31.24 16 15 O -0.64 -38.63 11.70 -4.32 -0.05 -38.68 16 16 C -0.55 -32.34 9.37 24.83 0.23 -32.10 16 17 H 0.08 4.85 5.99 -2.91 -0.02 4.83 16 18 C 0.07 4.03 5.52 85.30 0.47 4.50 16 19 N -0.85 -48.92 13.92 21.83 0.30 -48.62 16 20 Si 1.01 53.73 25.92 68.60 1.78 55.51 16 21 H -0.29 -16.04 7.11 99.48 0.71 -15.33 16 22 H -0.28 -15.87 6.53 99.48 0.65 -15.22 16 23 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 24 C 0.13 5.17 6.54 86.51 0.57 5.74 16 25 C 0.06 1.83 5.27 86.54 0.46 2.28 16 26 C -0.09 -0.59 2.75 -10.80 -0.03 -0.62 16 27 C -0.15 -1.01 9.05 71.98 0.65 -0.36 16 28 C -0.15 -1.12 8.76 71.98 0.63 -0.49 16 29 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 31 H 0.10 0.74 8.08 -2.39 -0.02 0.72 16 32 H 0.41 4.47 6.63 -92.71 -0.61 3.86 16 33 H 0.08 1.39 8.12 -2.39 -0.02 1.37 16 34 H 0.13 1.99 7.97 -2.39 -0.02 1.97 16 35 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.11 2.46 7.99 -2.38 -0.02 2.44 16 37 H 0.07 2.99 7.09 -2.39 -0.02 2.98 16 38 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.29 15.34 8.29 -92.71 -0.77 14.57 16 40 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 41 H 0.08 3.58 5.40 -2.39 -0.01 3.57 16 42 H 0.03 0.94 8.14 -2.39 -0.02 0.93 16 43 H 0.10 3.20 5.76 -2.39 -0.01 3.18 16 44 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 45 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 46 H 0.06 0.47 8.14 -2.38 -0.02 0.45 16 47 H 0.05 0.44 7.53 -2.39 -0.02 0.42 16 48 H 0.05 0.48 7.08 -2.39 -0.02 0.46 16 49 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 50 H 0.06 0.43 6.39 -2.39 -0.02 0.41 16 Total: -1.00 -80.71 393.24 0.87 -79.84 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: 0.28 Total: 7.70 kcal Atomic # 6 Polarization: 30.15 SS G_CDS: 6.76 Total: 36.91 kcal Atomic # 7 Polarization: -104.28 SS G_CDS: -7.84 Total: -112.12 kcal Atomic # 8 Polarization: -67.73 SS G_CDS: -0.12 Total: -67.84 kcal Atomic # 14 Polarization: 53.73 SS G_CDS: 1.78 Total: 55.51 kcal Total: -80.71 0.87 -79.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570407893.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.562 kcal (2) G-P(sol) polarization free energy of solvation -80.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds