Wall clock time and date at job start Sat Apr 11 2020 05:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47032 * 2 1 4 4 H 1.08999 * 109.51044 * 305.10629 * 3 2 1 5 5 C 1.53299 * 109.51344 * 185.00243 * 3 2 1 6 6 N 1.47145 * 108.38246 * 187.77460 * 5 3 2 7 7 C 1.34781 * 120.98404 * 230.55692 * 6 5 3 8 8 O 1.21358 * 119.99329 * 358.35302 * 7 6 5 9 9 C 1.49440 * 120.00402 * 178.36052 * 7 6 5 10 10 O 1.21355 * 120.00200 * 6.28834 * 9 7 6 11 11 N 1.34782 * 120.00180 * 186.29316 * 9 7 6 12 12 C 1.46500 * 120.00024 * 179.97438 * 11 9 7 13 13 C 1.53035 * 109.45830 * 275.06383 * 12 11 9 14 14 C 1.53192 * 109.31007 * 178.61570 * 13 12 11 15 15 N 1.46922 * 108.77728 * 54.63612 * 14 13 12 16 16 C 1.36941 * 120.62972 * 126.41337 * 15 14 13 17 17 H 1.07995 * 119.99828 * 329.57325 * 16 15 14 18 18 C 1.38813 * 119.99958 * 149.58275 * 16 15 14 19 19 N 1.31623 * 120.00075 * 167.77439 * 18 16 15 20 20 Si 1.86798 * 119.99910 * 347.77043 * 18 16 15 21 21 H 1.48493 * 109.47255 * 91.96326 * 20 18 16 22 22 H 1.48506 * 109.47050 * 211.96115 * 20 18 16 23 23 H 1.48502 * 109.47068 * 331.96136 * 20 18 16 24 24 C 1.46923 * 118.73984 * 306.39020 * 15 14 13 25 25 C 1.53048 * 109.45837 * 154.99809 * 12 11 9 26 26 C 1.47148 * 118.04050 * 50.53542 * 6 5 3 27 27 C 1.53296 * 108.41575 * 309.44553 * 26 6 5 28 28 O 1.42961 * 109.51216 * 65.25676 * 3 2 1 29 29 H 1.08995 * 109.47460 * 60.00012 * 1 2 3 30 30 H 1.09004 * 109.47133 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47253 * 299.99740 * 1 2 3 32 32 H 1.09003 * 109.46978 * 240.00654 * 2 1 3 33 33 H 1.08995 * 109.47460 * 119.99988 * 2 1 3 34 34 H 1.08995 * 109.67972 * 68.04950 * 5 3 2 35 35 H 1.09003 * 109.67781 * 307.49631 * 5 3 2 36 36 H 0.96996 * 119.99673 * 359.97438 * 11 9 7 37 37 H 1.08999 * 109.45979 * 35.02691 * 12 11 9 38 38 H 1.08998 * 109.50065 * 298.56492 * 13 12 11 39 39 H 1.09002 * 109.49861 * 58.67204 * 13 12 11 40 40 H 1.08999 * 109.58891 * 294.84272 * 14 13 12 41 41 H 1.09006 * 109.58716 * 174.42547 * 14 13 12 42 42 H 0.96997 * 119.99525 * 179.97438 * 19 18 16 43 43 H 1.09004 * 109.58617 * 293.82081 * 24 15 14 44 44 H 1.08998 * 109.58958 * 173.39423 * 24 15 14 45 45 H 1.08998 * 109.49367 * 301.33533 * 25 12 11 46 46 H 1.08994 * 109.49797 * 61.43301 * 25 12 11 47 47 H 1.09002 * 109.68391 * 69.18257 * 26 6 5 48 48 H 1.09000 * 109.68965 * 189.70141 * 26 6 5 49 49 H 1.09004 * 109.51599 * 172.24116 * 27 26 6 50 50 H 1.09004 * 109.51289 * 292.39395 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6042 1.9827 -0.8405 5 6 3.5678 1.4455 -0.1260 6 7 4.0464 2.8239 0.0643 7 6 4.8910 3.3932 -0.8183 8 8 5.2915 2.7576 -1.7714 9 6 5.3345 4.8069 -0.6232 10 8 5.0273 5.4053 0.3868 11 7 6.0756 5.4173 -1.5691 12 6 6.5098 6.8034 -1.3781 13 6 5.4019 7.7529 -1.8394 14 6 5.8456 9.2005 -1.6061 15 7 7.1379 9.4122 -2.2723 16 6 7.3052 10.4423 -3.1590 17 1 6.4688 10.7896 -3.7473 18 6 8.5500 11.0399 -3.3017 19 7 8.7767 11.8556 -4.3095 20 14 9.9032 10.6865 -2.0635 21 1 10.7210 9.5412 -2.5374 22 1 10.7674 11.8855 -1.9189 23 1 9.2970 10.3518 -0.7498 24 6 8.2473 8.4981 -1.9688 25 6 7.7767 7.0584 -2.1981 26 6 3.5753 3.5627 1.2465 27 6 2.0471 3.4574 1.3061 28 8 1.6674 2.0807 1.2238 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 3.8551 1.0904 -1.1156 35 1 4.0002 0.7981 0.6369 36 1 6.3214 4.9389 -2.3763 37 1 6.7196 6.9760 -0.3225 38 1 5.2087 7.5982 -2.9009 39 1 4.4931 7.5550 -1.2710 40 1 5.9517 9.3824 -0.5367 41 1 5.1037 9.8818 -2.0228 42 1 9.6464 12.2735 -4.4090 43 1 8.5493 8.6226 -0.9289 44 1 9.0901 8.7158 -2.6248 45 1 8.5581 6.3660 -1.8850 46 1 7.5612 6.9102 -3.2562 47 1 4.0085 3.1284 2.1475 48 1 3.8683 4.6095 1.1662 49 1 1.6894 3.8791 2.2455 50 1 1.6115 4.0057 0.4708 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588124774.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:04 Heat of formation + Delta-G solvation = -70.927183 kcal Electronic energy + Delta-G solvation = -30532.704275 eV Core-core repulsion = 26368.551950 eV Total energy + Delta-G solvation = -4164.152325 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.28441 -39.72442 -38.57570 -37.77543 -35.61075 -34.53039 -34.40828 -32.25751 -30.57580 -30.53012 -30.28029 -28.56905 -25.94106 -24.86513 -23.97152 -23.09635 -22.58416 -21.68577 -21.20318 -20.37134 -19.60038 -18.01197 -17.38121 -16.94746 -16.82279 -16.33875 -16.25850 -15.62298 -15.47030 -15.21533 -14.99445 -14.47726 -14.27021 -14.23086 -14.15861 -13.92360 -13.64749 -13.43538 -13.18275 -13.05516 -12.87516 -12.45808 -12.31321 -12.06608 -11.91231 -11.86994 -11.48335 -11.47094 -11.36969 -11.07711 -11.00915 -10.98336 -10.64999 -10.54167 -10.39710 -10.08359 -9.84042 -9.53220 -9.28835 -9.13591 -8.98408 -8.71765 -7.00970 -5.97099 -3.40831 1.19607 2.02028 2.98103 3.16348 3.26374 3.35302 3.43341 3.45646 4.08759 4.21760 4.46980 4.48094 4.56133 4.64129 4.81902 4.85754 4.88753 4.98431 5.00546 5.13360 5.13860 5.18625 5.29517 5.32196 5.40134 5.44224 5.51835 5.53422 5.58764 5.70042 5.70862 5.83237 5.89498 5.93410 6.02616 6.06578 6.16350 6.26596 6.44544 6.48942 6.56571 6.58451 6.68897 6.76702 6.81602 7.10504 7.51254 7.83894 7.93821 8.29806 8.88081 9.66236 10.03311 11.18789 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.030213 B = 0.002197 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.532485 B =12743.355644 C =12904.247320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C 0.079 3.921 4 H 0.064 0.936 5 C 0.078 3.922 6 N -0.586 5.586 7 C 0.509 3.491 8 O -0.521 6.521 9 C 0.510 3.490 10 O -0.514 6.514 11 N -0.685 5.685 12 C 0.147 3.853 13 C -0.143 4.143 14 C 0.153 3.847 15 N -0.607 5.607 16 C -0.261 4.261 17 H 0.086 0.914 18 C 0.021 3.979 19 N -0.914 5.914 20 Si 0.892 3.108 21 H -0.289 1.289 22 H -0.304 1.304 23 H -0.267 1.267 24 C 0.125 3.875 25 C -0.143 4.143 26 C 0.019 3.981 27 C 0.049 3.951 28 O -0.377 6.377 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.102 0.898 35 H 0.080 0.920 36 H 0.411 0.589 37 H 0.090 0.910 38 H 0.066 0.934 39 H 0.060 0.940 40 H 0.027 0.973 41 H 0.068 0.932 42 H 0.263 0.737 43 H 0.033 0.967 44 H 0.077 0.923 45 H 0.062 0.938 46 H 0.073 0.927 47 H 0.075 0.925 48 H 0.166 0.834 49 H 0.109 0.891 50 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.312 -22.859 10.498 28.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.152 4.152 3 C 0.020 3.980 4 H 0.082 0.918 5 C -0.045 4.045 6 N -0.320 5.320 7 C 0.292 3.708 8 O -0.397 6.397 9 C 0.291 3.709 10 O -0.392 6.392 11 N -0.335 5.335 12 C 0.044 3.956 13 C -0.183 4.183 14 C 0.026 3.974 15 N -0.331 5.331 16 C -0.389 4.389 17 H 0.104 0.896 18 C -0.177 4.177 19 N -0.557 5.557 20 Si 0.723 3.277 21 H -0.217 1.217 22 H -0.233 1.233 23 H -0.192 1.192 24 C -0.001 4.001 25 C -0.183 4.183 26 C -0.102 4.102 27 C -0.028 4.028 28 O -0.296 6.296 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.121 0.879 35 H 0.099 0.901 36 H 0.247 0.753 37 H 0.108 0.892 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.045 0.955 41 H 0.087 0.913 42 H 0.073 0.927 43 H 0.051 0.949 44 H 0.095 0.905 45 H 0.081 0.919 46 H 0.092 0.908 47 H 0.094 0.906 48 H 0.182 0.818 49 H 0.127 0.873 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.275 -22.708 10.737 28.411 hybrid contribution 1.122 -0.384 0.041 1.186 sum -12.154 -23.092 10.778 28.233 Atomic orbital electron populations 1.21698 0.94769 1.01735 1.02436 1.21511 0.97155 0.93463 1.03117 1.22524 0.92607 0.95054 0.87788 0.91812 1.22475 0.94899 0.82646 1.04451 1.47972 1.44947 1.14529 1.24559 1.20241 0.79945 0.87911 0.82702 1.90760 1.54992 1.64066 1.29874 1.20002 0.79972 0.86828 0.84133 1.90321 1.54800 1.66251 1.27868 1.46200 1.50722 1.15130 1.21432 1.21238 0.95103 0.77895 1.01354 1.22424 0.97031 0.97312 1.01513 1.20888 0.88410 0.92587 0.95505 1.44378 1.07653 1.31235 1.49863 1.18934 0.97715 1.08403 1.13866 0.89603 1.25373 0.98123 0.96622 0.97630 1.69759 1.23220 1.32943 1.29750 0.86872 0.81845 0.75799 0.83142 1.21699 1.23270 1.19156 1.21437 0.92380 0.87441 0.98812 1.22393 0.95476 0.99880 1.00512 1.23941 0.95090 1.04205 0.86989 1.23050 0.93892 0.82736 1.03127 1.87964 1.79989 1.24116 1.37527 0.92833 0.92528 0.91831 0.90227 0.90755 0.87935 0.90149 0.75305 0.89219 0.91535 0.92108 0.95491 0.91343 0.92699 0.94892 0.90541 0.91936 0.90842 0.90635 0.81806 0.87343 0.92678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.81 37.16 0.36 -0.53 16 2 C -0.11 -0.70 5.64 -26.73 -0.15 -0.85 16 3 C 0.08 0.63 2.78 -26.58 -0.07 0.56 16 4 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 5 C 0.08 0.69 5.92 -3.54 -0.02 0.67 16 6 N -0.59 -6.27 3.02 -172.79 -0.52 -6.80 16 7 C 0.51 6.43 7.77 -11.59 -0.09 6.34 16 8 O -0.52 -7.43 15.97 5.49 0.09 -7.34 16 9 C 0.51 6.71 7.77 -11.59 -0.09 6.62 16 10 O -0.51 -7.25 12.70 5.49 0.07 -7.18 16 11 N -0.68 -8.94 5.07 -54.20 -0.27 -9.21 16 12 C 0.15 2.20 2.42 -67.89 -0.16 2.04 16 13 C -0.14 -2.26 5.65 -26.61 -0.15 -2.41 16 14 C 0.15 2.89 6.52 -3.71 -0.02 2.86 16 15 N -0.61 -13.83 2.77 -172.32 -0.48 -14.30 16 16 C -0.26 -7.09 10.08 -15.06 -0.15 -7.25 16 17 H 0.09 2.51 8.06 -52.49 -0.42 2.09 16 18 C 0.02 0.61 5.36 -17.43 -0.09 0.51 16 19 N -0.91 -27.66 13.97 55.49 0.78 -26.88 16 20 Si 0.89 21.95 24.26 -169.99 -4.12 17.83 16 21 H -0.29 -6.83 6.68 56.52 0.38 -6.46 16 22 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 23 H -0.27 -6.35 6.03 56.52 0.34 -6.01 16 24 C 0.13 2.58 4.12 -3.71 -0.02 2.57 16 25 C -0.14 -2.31 5.55 -26.61 -0.15 -2.46 16 26 C 0.02 0.18 6.39 -3.53 -0.02 0.16 16 27 C 0.05 0.41 6.99 37.31 0.26 0.67 16 28 O -0.38 -3.46 9.93 -35.23 -0.35 -3.81 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.44 7.83 -51.93 -0.41 0.03 16 32 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.10 0.94 7.09 -51.93 -0.37 0.57 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.41 4.94 8.09 -40.82 -0.33 4.61 16 37 H 0.09 1.42 7.58 -51.93 -0.39 1.03 16 38 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 1.30 7.93 -51.93 -0.41 0.88 16 42 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 43 H 0.03 0.68 6.69 -51.93 -0.35 0.33 16 44 H 0.08 1.73 4.31 -51.93 -0.22 1.50 16 45 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 46 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 47 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.17 1.80 3.95 -56.40 -0.22 1.57 16 49 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 50 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 384.12 15.07 5.79 5.79 Total: -1.00 -31.34 384.12 -7.86 -39.20 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -8.27 Total: 3.23 kcal Atomic # 6 Polarization: 10.06 SS G_CDS: -0.57 Total: 9.50 kcal Atomic # 7 Polarization: -56.70 SS G_CDS: -0.50 Total: -57.20 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: -0.19 Total: -18.34 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.12 Total: 17.83 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.34 -7.86 -39.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588124774.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.728 kcal (2) G-P(sol) polarization free energy of solvation -31.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds