Wall clock time and date at job start Sat Apr 11 2020 05:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47032 * 2 1 4 4 H 1.08999 * 109.51044 * 305.10629 * 3 2 1 5 5 C 1.53299 * 109.51344 * 185.00243 * 3 2 1 6 6 N 1.47145 * 108.38246 * 187.77460 * 5 3 2 7 7 C 1.34781 * 120.98404 * 230.55692 * 6 5 3 8 8 O 1.21358 * 119.99329 * 358.35302 * 7 6 5 9 9 C 1.49440 * 120.00402 * 178.36052 * 7 6 5 10 10 O 1.21355 * 120.00200 * 6.28834 * 9 7 6 11 11 N 1.34782 * 120.00180 * 186.29316 * 9 7 6 12 12 C 1.46500 * 120.00024 * 179.97438 * 11 9 7 13 13 C 1.53035 * 109.45830 * 275.06383 * 12 11 9 14 14 C 1.53192 * 109.31007 * 178.61570 * 13 12 11 15 15 N 1.46922 * 108.77728 * 54.63612 * 14 13 12 16 16 C 1.36941 * 120.62972 * 126.41337 * 15 14 13 17 17 H 1.07995 * 119.99828 * 329.57325 * 16 15 14 18 18 C 1.38813 * 119.99958 * 149.58275 * 16 15 14 19 19 N 1.31623 * 120.00075 * 167.77439 * 18 16 15 20 20 Si 1.86798 * 119.99910 * 347.77043 * 18 16 15 21 21 H 1.48493 * 109.47255 * 91.96326 * 20 18 16 22 22 H 1.48506 * 109.47050 * 211.96115 * 20 18 16 23 23 H 1.48502 * 109.47068 * 331.96136 * 20 18 16 24 24 C 1.46923 * 118.73984 * 306.39020 * 15 14 13 25 25 C 1.53048 * 109.45837 * 154.99809 * 12 11 9 26 26 C 1.47148 * 118.04050 * 50.53542 * 6 5 3 27 27 C 1.53296 * 108.41575 * 309.44553 * 26 6 5 28 28 O 1.42961 * 109.51216 * 65.25676 * 3 2 1 29 29 H 1.08995 * 109.47460 * 60.00012 * 1 2 3 30 30 H 1.09004 * 109.47133 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47253 * 299.99740 * 1 2 3 32 32 H 1.09003 * 109.46978 * 240.00654 * 2 1 3 33 33 H 1.08995 * 109.47460 * 119.99988 * 2 1 3 34 34 H 1.08995 * 109.67972 * 68.04950 * 5 3 2 35 35 H 1.09003 * 109.67781 * 307.49631 * 5 3 2 36 36 H 0.96996 * 119.99673 * 359.97438 * 11 9 7 37 37 H 1.08999 * 109.45979 * 35.02691 * 12 11 9 38 38 H 1.08998 * 109.50065 * 298.56492 * 13 12 11 39 39 H 1.09002 * 109.49861 * 58.67204 * 13 12 11 40 40 H 1.08999 * 109.58891 * 294.84272 * 14 13 12 41 41 H 1.09006 * 109.58716 * 174.42547 * 14 13 12 42 42 H 0.96997 * 119.99525 * 179.97438 * 19 18 16 43 43 H 1.09004 * 109.58617 * 293.82081 * 24 15 14 44 44 H 1.08998 * 109.58958 * 173.39423 * 24 15 14 45 45 H 1.08998 * 109.49367 * 301.33533 * 25 12 11 46 46 H 1.08994 * 109.49797 * 61.43301 * 25 12 11 47 47 H 1.09002 * 109.68391 * 69.18257 * 26 6 5 48 48 H 1.09000 * 109.68965 * 189.70141 * 26 6 5 49 49 H 1.09004 * 109.51599 * 172.24116 * 27 26 6 50 50 H 1.09004 * 109.51289 * 292.39395 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6042 1.9827 -0.8405 5 6 3.5678 1.4455 -0.1260 6 7 4.0464 2.8239 0.0643 7 6 4.8910 3.3932 -0.8183 8 8 5.2915 2.7576 -1.7714 9 6 5.3345 4.8069 -0.6232 10 8 5.0273 5.4053 0.3868 11 7 6.0756 5.4173 -1.5691 12 6 6.5098 6.8034 -1.3781 13 6 5.4019 7.7529 -1.8394 14 6 5.8456 9.2005 -1.6061 15 7 7.1379 9.4122 -2.2723 16 6 7.3052 10.4423 -3.1590 17 1 6.4688 10.7896 -3.7473 18 6 8.5500 11.0399 -3.3017 19 7 8.7767 11.8556 -4.3095 20 14 9.9032 10.6865 -2.0635 21 1 10.7210 9.5412 -2.5374 22 1 10.7674 11.8855 -1.9189 23 1 9.2970 10.3518 -0.7498 24 6 8.2473 8.4981 -1.9688 25 6 7.7767 7.0584 -2.1981 26 6 3.5753 3.5627 1.2465 27 6 2.0471 3.4574 1.3061 28 8 1.6674 2.0807 1.2238 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 3.8551 1.0904 -1.1156 35 1 4.0002 0.7981 0.6369 36 1 6.3214 4.9389 -2.3763 37 1 6.7196 6.9760 -0.3225 38 1 5.2087 7.5982 -2.9009 39 1 4.4931 7.5550 -1.2710 40 1 5.9517 9.3824 -0.5367 41 1 5.1037 9.8818 -2.0228 42 1 9.6464 12.2735 -4.4090 43 1 8.5493 8.6226 -0.9289 44 1 9.0901 8.7158 -2.6248 45 1 8.5581 6.3660 -1.8850 46 1 7.5612 6.9102 -3.2562 47 1 4.0085 3.1284 2.1475 48 1 3.8683 4.6095 1.1662 49 1 1.6894 3.8791 2.2455 50 1 1.6115 4.0057 0.4708 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588124774.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:03 Heat of formation + Delta-G solvation = -93.500688 kcal Electronic energy + Delta-G solvation = -30533.683135 eV Core-core repulsion = 26368.551950 eV Total energy + Delta-G solvation = -4165.131185 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.23442 -40.65432 -39.58580 -39.07615 -36.69306 -35.68652 -34.99983 -34.08083 -32.04326 -31.91252 -31.15309 -29.38919 -27.29902 -25.92181 -25.01881 -24.48661 -23.69814 -22.82452 -21.94865 -21.48931 -20.89836 -19.15113 -18.56926 -18.31045 -17.65172 -17.48918 -17.24993 -16.89938 -16.41471 -16.19143 -15.97280 -15.87666 -15.53771 -15.40818 -15.17156 -14.82052 -14.68248 -14.54905 -14.35141 -14.24569 -14.06673 -13.91563 -13.63118 -13.48059 -12.88303 -12.66080 -12.56874 -12.50787 -12.30168 -12.23445 -12.05027 -12.00729 -11.92669 -11.81002 -11.69425 -11.50127 -11.36830 -11.24818 -10.78419 -10.31027 -10.23203 -9.78936 -8.91693 -8.14207 -5.54180 0.19667 1.08612 1.30815 1.43578 1.51811 1.98267 2.24110 2.41947 2.71750 3.11214 3.11331 3.30463 3.55335 3.69849 3.88446 3.89437 3.90478 4.00730 4.14467 4.16401 4.28982 4.30904 4.35158 4.45773 4.46363 4.54177 4.59868 4.61725 4.71851 4.74469 4.80458 4.87427 4.90968 4.93732 4.98828 5.05754 5.07079 5.10545 5.14674 5.20928 5.37562 5.41052 5.43186 5.81021 5.89066 6.09359 6.11849 6.14506 6.55713 6.82346 6.91301 7.60588 8.00891 9.05438 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.030213 B = 0.002197 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.532485 B =12743.355644 C =12904.247320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.112 4.112 3 C 0.080 3.920 4 H 0.057 0.943 5 C 0.076 3.924 6 N -0.583 5.583 7 C 0.509 3.491 8 O -0.542 6.542 9 C 0.512 3.488 10 O -0.522 6.522 11 N -0.679 5.679 12 C 0.158 3.842 13 C -0.130 4.130 14 C 0.149 3.851 15 N -0.621 5.621 16 C -0.247 4.247 17 H 0.051 0.949 18 C -0.041 4.041 19 N -0.964 5.964 20 Si 0.956 3.044 21 H -0.273 1.273 22 H -0.316 1.316 23 H -0.251 1.251 24 C 0.118 3.882 25 C -0.133 4.133 26 C 0.020 3.980 27 C 0.051 3.949 28 O -0.386 6.386 29 H 0.051 0.949 30 H 0.067 0.933 31 H 0.051 0.949 32 H 0.093 0.907 33 H 0.077 0.923 34 H 0.100 0.900 35 H 0.092 0.908 36 H 0.417 0.583 37 H 0.089 0.911 38 H 0.060 0.940 39 H 0.076 0.924 40 H 0.039 0.961 41 H 0.059 0.941 42 H 0.261 0.739 43 H 0.043 0.957 44 H 0.056 0.944 45 H 0.090 0.910 46 H 0.070 0.930 47 H 0.083 0.917 48 H 0.155 0.845 49 H 0.128 0.872 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.700 -25.567 12.462 31.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.149 4.149 3 C 0.022 3.978 4 H 0.075 0.925 5 C -0.046 4.046 6 N -0.316 5.316 7 C 0.292 3.708 8 O -0.420 6.420 9 C 0.293 3.707 10 O -0.401 6.401 11 N -0.330 5.330 12 C 0.054 3.946 13 C -0.170 4.170 14 C 0.023 3.977 15 N -0.346 5.346 16 C -0.376 4.376 17 H 0.068 0.932 18 C -0.235 4.235 19 N -0.610 5.610 20 Si 0.785 3.215 21 H -0.200 1.200 22 H -0.246 1.246 23 H -0.175 1.175 24 C -0.007 4.007 25 C -0.172 4.172 26 C -0.101 4.101 27 C -0.027 4.027 28 O -0.305 6.305 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.071 0.929 32 H 0.112 0.888 33 H 0.096 0.904 34 H 0.118 0.882 35 H 0.110 0.890 36 H 0.255 0.745 37 H 0.107 0.893 38 H 0.078 0.922 39 H 0.094 0.906 40 H 0.057 0.943 41 H 0.078 0.922 42 H 0.070 0.930 43 H 0.060 0.940 44 H 0.074 0.926 45 H 0.109 0.891 46 H 0.089 0.911 47 H 0.102 0.898 48 H 0.171 0.829 49 H 0.146 0.854 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.708 -25.479 12.745 31.616 hybrid contribution 1.090 0.422 -0.551 1.293 sum -12.618 -25.057 12.194 30.590 Atomic orbital electron populations 1.21683 0.94687 1.02322 1.01814 1.21537 0.97161 0.92253 1.03997 1.22588 0.91917 0.96070 0.87255 0.92452 1.22628 0.95503 0.81692 1.04731 1.48113 1.43971 1.15236 1.24247 1.20092 0.80310 0.87539 0.82864 1.90754 1.56056 1.64363 1.30795 1.20113 0.79631 0.87074 0.83834 1.90351 1.54992 1.66612 1.28165 1.45985 1.50839 1.14311 1.21867 1.20957 0.94086 0.78669 1.00882 1.22249 0.97966 0.95386 1.01436 1.21020 0.86568 0.94518 0.95566 1.44485 1.09562 1.30874 1.49695 1.18844 0.96470 1.08942 1.13374 0.93163 1.26066 1.00863 0.97126 0.99416 1.69913 1.23889 1.35262 1.31966 0.85838 0.78907 0.75510 0.81243 1.19958 1.24573 1.17522 1.21485 0.91177 0.89448 0.98610 1.22216 0.96853 0.97411 1.00725 1.23930 0.96008 1.03412 0.86704 1.23113 0.92896 0.82547 1.04096 1.87966 1.80027 1.24458 1.38006 0.92954 0.91365 0.92935 0.88821 0.90390 0.88162 0.89034 0.74533 0.89275 0.92166 0.90587 0.94346 0.92246 0.93005 0.93964 0.92568 0.89142 0.91130 0.89846 0.82869 0.85414 0.92986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.81 71.98 0.71 -0.80 16 2 C -0.11 -1.13 5.64 30.59 0.17 -0.96 16 3 C 0.08 1.14 2.78 30.70 0.09 1.22 16 4 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 5 C 0.08 1.20 5.92 86.36 0.51 1.71 16 6 N -0.58 -11.35 3.02 -818.94 -2.47 -13.83 16 7 C 0.51 11.92 7.77 87.26 0.68 12.59 16 8 O -0.54 -14.57 15.97 -3.27 -0.05 -14.62 16 9 C 0.51 12.36 7.77 87.26 0.68 13.03 16 10 O -0.52 -13.53 12.70 -3.26 -0.04 -13.57 16 11 N -0.68 -16.06 5.07 -443.73 -2.25 -18.31 16 12 C 0.16 4.31 2.42 45.02 0.11 4.42 16 13 C -0.13 -3.89 5.65 30.67 0.17 -3.71 16 14 C 0.15 5.47 6.52 86.36 0.56 6.03 16 15 N -0.62 -27.89 2.77 -699.10 -1.94 -29.82 16 16 C -0.25 -13.69 10.08 84.03 0.85 -12.85 16 17 H 0.05 3.08 8.06 -2.91 -0.02 3.06 16 18 C -0.04 -2.34 5.36 84.86 0.46 -1.88 16 19 N -0.96 -60.29 13.97 21.65 0.30 -59.99 16 20 Si 0.96 45.53 24.26 68.60 1.66 47.19 16 21 H -0.27 -12.15 6.68 99.48 0.66 -11.48 16 22 H -0.32 -15.56 7.11 99.48 0.71 -14.85 16 23 H -0.25 -11.17 6.03 99.48 0.60 -10.57 16 24 C 0.12 4.62 4.12 86.36 0.36 4.98 16 25 C -0.13 -3.94 5.55 30.67 0.17 -3.77 16 26 C 0.02 0.34 6.39 86.35 0.55 0.89 16 27 C 0.05 0.73 6.99 72.08 0.50 1.24 16 28 O -0.39 -6.30 9.93 -148.98 -1.48 -7.78 16 29 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 31 H 0.05 0.65 7.83 -2.39 -0.02 0.64 16 32 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.10 1.66 7.09 -2.39 -0.02 1.64 16 35 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.42 9.04 8.09 -92.71 -0.75 8.29 16 37 H 0.09 2.53 7.58 -2.39 -0.02 2.51 16 38 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.06 2.25 7.93 -2.38 -0.02 2.23 16 42 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 43 H 0.04 1.59 6.69 -2.39 -0.02 1.58 16 44 H 0.06 2.44 4.31 -2.39 -0.01 2.43 16 45 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 46 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 47 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 48 H 0.16 3.05 3.95 -73.13 -0.29 2.76 16 49 H 0.13 1.34 8.14 -2.38 -0.02 1.32 16 50 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 Total: -1.00 -68.12 384.12 0.06 -68.06 By element: Atomic # 1 Polarization: 20.76 SS G_CDS: -0.23 Total: 20.53 kcal Atomic # 6 Polarization: 15.58 SS G_CDS: 6.56 Total: 22.14 kcal Atomic # 7 Polarization: -115.59 SS G_CDS: -6.36 Total: -121.95 kcal Atomic # 8 Polarization: -34.40 SS G_CDS: -1.57 Total: -35.97 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 1.66 Total: 47.19 kcal Total: -68.12 0.06 -68.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588124774.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.437 kcal (2) G-P(sol) polarization free energy of solvation -68.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds