Wall clock time and date at job start Sat Apr 11 2020 05:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52991 * 109.47407 * 2 1 4 4 C 1.52994 * 109.47171 * 239.99423 * 2 1 3 5 5 N 1.46509 * 109.46634 * 120.00100 * 2 1 3 6 6 C 1.46755 * 124.35265 * 59.99953 * 5 2 1 7 7 C 1.54476 * 105.47483 * 162.98124 * 6 5 2 8 8 H 1.08998 * 111.00182 * 143.54767 * 7 6 5 9 9 N 1.46502 * 110.97177 * 267.29905 * 7 6 5 10 10 C 1.34773 * 120.00121 * 198.83019 * 9 7 6 11 11 O 1.21593 * 119.99796 * 0.02562 * 10 9 7 12 12 N 1.34775 * 120.00233 * 179.97438 * 10 9 7 13 13 C 1.47423 * 125.64744 * 359.70018 * 12 10 9 14 14 C 1.55130 * 104.72568 * 155.81106 * 13 12 10 15 15 C 1.55162 * 101.48473 * 37.29354 * 14 13 12 16 16 O 1.42899 * 110.86845 * 82.76432 * 15 14 13 17 17 C 1.50694 * 110.71995 * 205.97013 * 15 14 13 18 18 H 1.08002 * 120.00415 * 354.97859 * 17 15 14 19 19 C 1.37876 * 120.00106 * 174.97563 * 17 15 14 20 20 N 1.31516 * 119.99625 * 0.02562 * 19 17 15 21 21 Si 1.86796 * 120.00624 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46940 * 89.99949 * 21 19 17 23 23 H 1.48498 * 109.47601 * 210.00202 * 21 19 17 24 24 H 1.48500 * 109.46870 * 330.00573 * 21 19 17 25 25 C 1.47023 * 125.65043 * 179.97438 * 12 10 9 26 26 C 1.54627 * 101.76424 * 25.41616 * 7 6 5 27 27 C 1.34424 * 124.34231 * 239.99459 * 5 2 1 28 28 O 1.21276 * 124.94682 * 0.45878 * 27 5 2 29 29 H 1.09004 * 109.47251 * 300.00193 * 1 2 3 30 30 H 1.09002 * 109.46750 * 60.00089 * 1 2 3 31 31 H 1.09004 * 109.47425 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47211 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47093 * 299.99701 * 3 2 1 34 34 H 1.08998 * 109.47322 * 60.00043 * 3 2 1 35 35 H 1.09001 * 109.47796 * 300.00228 * 4 2 1 36 36 H 1.09002 * 109.46885 * 60.00571 * 4 2 1 37 37 H 1.09002 * 109.47403 * 179.97438 * 4 2 1 38 38 H 1.08999 * 110.24678 * 43.98589 * 6 5 2 39 39 H 1.09003 * 110.24487 * 281.97930 * 6 5 2 40 40 H 0.97003 * 119.99940 * 18.83000 * 9 7 6 41 41 H 1.09003 * 110.36831 * 274.74100 * 13 12 10 42 42 H 1.09003 * 110.36620 * 37.06719 * 13 12 10 43 43 H 1.09000 * 111.19224 * 279.19127 * 14 13 12 44 44 H 1.08999 * 110.94198 * 155.29188 * 14 13 12 45 45 H 0.96700 * 113.99481 * 184.93492 * 16 15 14 46 46 H 0.97008 * 119.99953 * 180.02562 * 20 19 17 47 47 H 1.08998 * 109.88163 * 300.44625 * 25 12 10 48 48 H 1.09000 * 109.87996 * 61.45625 * 25 12 10 49 49 H 1.09001 * 110.48777 * 93.88219 * 26 7 6 50 50 H 1.09000 * 110.48903 * 216.52672 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 2.0182 -0.6907 1.1963 6 6 1.7230 -2.0907 1.5226 7 6 2.7663 -2.4944 2.5880 8 1 2.3299 -3.1662 3.3271 9 7 3.9453 -3.1002 1.9642 10 6 4.7859 -3.8528 2.7013 11 8 4.5654 -4.0295 3.8839 12 7 5.8703 -4.4106 2.1273 13 6 6.2520 -4.2850 0.7089 14 6 7.7837 -4.5297 0.6895 15 6 7.9332 -5.6371 1.7661 16 8 7.6561 -6.9253 1.2131 17 6 9.3111 -5.6057 2.3755 18 1 10.0577 -4.9283 1.9880 19 6 9.6187 -6.4418 3.4278 20 7 8.7097 -7.2670 3.8993 21 14 11.3268 -6.4034 4.1829 22 1 11.3578 -5.4107 5.2868 23 1 11.6625 -7.7479 4.7166 24 1 12.3181 -6.0211 3.1454 25 6 6.8655 -5.2497 2.8107 26 6 3.1158 -1.1275 3.2207 27 6 2.7943 -0.1233 2.1359 28 8 3.1797 1.0264 2.1171 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 3.1301 1.4423 0.0005 33 1 1.6767 1.9562 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 -1.7490 -1.2491 36 1 1.6767 -0.2075 -2.1391 37 1 3.1300 -0.7210 -1.2494 38 1 1.8289 -2.7152 0.6356 39 1 0.7154 -2.1789 1.9290 40 1 4.1210 -2.9596 1.0206 41 1 5.7378 -5.0364 0.1097 42 1 6.0236 -3.2844 0.3418 43 1 8.3301 -3.6308 0.9752 44 1 8.1087 -4.8879 -0.2873 45 1 7.6624 -7.6417 1.8626 46 1 8.9260 -7.8550 4.6400 47 1 7.3278 -4.6892 3.6232 48 1 6.3866 -6.1462 3.2046 49 1 2.5008 -0.9468 4.1024 50 1 4.1743 -1.0855 3.4777 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591977558.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:24 Heat of formation + Delta-G solvation = -125.788218 kcal Electronic energy + Delta-G solvation = -31201.626946 eV Core-core repulsion = 27035.095668 eV Total energy + Delta-G solvation = -4166.531278 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.06291 -41.03538 -39.18752 -37.83705 -37.15227 -36.05762 -34.23460 -34.21999 -31.76328 -30.45680 -29.50632 -28.89328 -28.17827 -27.90601 -26.82407 -24.41446 -22.92706 -22.31217 -21.42928 -21.06651 -19.63759 -19.24675 -18.85625 -17.95038 -17.48363 -17.24201 -16.74299 -16.50595 -16.23991 -16.16289 -15.44019 -15.12135 -15.01162 -14.79492 -14.76899 -14.68057 -14.59736 -14.31097 -14.18733 -13.74376 -13.51658 -13.33060 -13.14732 -12.98088 -12.96096 -12.85558 -12.80324 -12.57231 -12.52803 -12.40619 -12.33732 -12.28833 -12.11751 -12.07765 -11.91428 -11.30666 -11.16000 -10.65565 -10.65208 -10.28326 -10.19415 -9.69705 -9.41688 -8.26131 -6.41305 1.40392 1.43124 1.51713 1.52858 1.62882 1.93250 2.13095 2.37847 2.99769 3.00887 3.31423 3.40506 3.77110 3.79806 3.91166 3.96483 4.05424 4.11509 4.17548 4.19185 4.38052 4.52379 4.55621 4.57835 4.71008 4.72961 4.73967 4.74706 4.77720 4.86116 4.88155 4.97290 4.99602 5.06448 5.13430 5.22923 5.23638 5.31857 5.36809 5.41431 5.48001 5.50342 5.71503 5.75311 6.02876 6.11054 6.15173 6.64961 7.03461 7.16366 7.28659 7.36061 7.55168 8.79836 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020985 B = 0.002605 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.984630 B =10745.444949 C =10939.422213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.167 3.833 3 C -0.136 4.136 4 C -0.156 4.156 5 N -0.604 5.604 6 C 0.104 3.896 7 C 0.155 3.845 8 H 0.116 0.884 9 N -0.722 5.722 10 C 0.714 3.286 11 O -0.635 6.635 12 N -0.635 5.635 13 C 0.110 3.890 14 C -0.112 4.112 15 C 0.234 3.766 16 O -0.585 6.585 17 C -0.558 4.558 18 H 0.064 0.936 19 C 0.027 3.973 20 N -0.913 5.913 21 Si 0.960 3.040 22 H -0.281 1.281 23 H -0.280 1.280 24 H -0.266 1.266 25 C 0.143 3.857 26 C -0.168 4.168 27 C 0.517 3.483 28 O -0.570 6.570 29 H 0.049 0.951 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.041 0.959 33 H 0.077 0.923 34 H 0.046 0.954 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.047 0.953 38 H 0.109 0.891 39 H 0.119 0.881 40 H 0.407 0.593 41 H 0.077 0.923 42 H 0.095 0.905 43 H 0.079 0.921 44 H 0.090 0.910 45 H 0.375 0.625 46 H 0.270 0.730 47 H 0.027 0.973 48 H 0.031 0.969 49 H 0.126 0.874 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.675 11.027 -11.466 24.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.085 3.915 3 C -0.193 4.193 4 C -0.214 4.214 5 N -0.338 5.338 6 C -0.018 4.018 7 C 0.049 3.951 8 H 0.133 0.867 9 N -0.379 5.379 10 C 0.416 3.584 11 O -0.517 6.517 12 N -0.372 5.372 13 C -0.012 4.012 14 C -0.150 4.150 15 C 0.194 3.806 16 O -0.393 6.393 17 C -0.596 4.596 18 H 0.082 0.918 19 C -0.174 4.174 20 N -0.552 5.552 21 Si 0.786 3.214 22 H -0.207 1.207 23 H -0.206 1.206 24 H -0.191 1.191 25 C 0.019 3.981 26 C -0.210 4.210 27 C 0.305 3.695 28 O -0.450 6.450 29 H 0.069 0.931 30 H 0.101 0.899 31 H 0.095 0.905 32 H 0.060 0.940 33 H 0.096 0.904 34 H 0.065 0.935 35 H 0.095 0.905 36 H 0.103 0.897 37 H 0.066 0.934 38 H 0.127 0.873 39 H 0.137 0.863 40 H 0.244 0.756 41 H 0.095 0.905 42 H 0.113 0.887 43 H 0.097 0.903 44 H 0.108 0.892 45 H 0.225 0.775 46 H 0.079 0.921 47 H 0.045 0.955 48 H 0.050 0.950 49 H 0.144 0.856 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -18.824 11.765 -11.114 24.825 hybrid contribution 1.460 -0.439 1.304 2.006 sum -17.364 11.326 -9.810 22.935 Atomic orbital electron populations 1.22147 0.92269 1.03556 1.02917 1.20676 0.95204 0.91979 0.83678 1.22006 1.00790 0.94716 1.01793 1.22185 1.01140 1.01647 0.96381 1.48534 1.50027 1.13021 1.22234 1.22515 0.98957 0.81184 0.99179 1.21735 0.84789 0.92718 0.95827 0.86655 1.44969 1.26234 1.53651 1.13016 1.15667 0.79536 0.78817 0.84362 1.90869 1.76506 1.68101 1.16243 1.47901 1.24549 1.52806 1.11917 1.22412 0.95705 1.02017 0.81090 1.22750 0.94763 0.97723 0.99741 1.19673 0.90364 0.81691 0.88899 1.86087 1.94054 1.18558 1.40614 1.21827 0.98283 1.22515 1.16980 0.91750 1.25779 1.00916 0.94380 0.96361 1.69796 1.35100 1.23643 1.26688 0.85517 0.80012 0.77401 0.78479 1.20655 1.20586 1.19056 1.22316 0.88218 0.91509 0.96051 1.22848 1.04199 0.94931 0.99005 1.20993 0.77327 0.87359 0.83811 1.90704 1.56284 1.19529 1.78456 0.93137 0.89866 0.90487 0.93987 0.90426 0.93530 0.90474 0.89741 0.93358 0.87252 0.86285 0.75618 0.90512 0.88717 0.90285 0.89163 0.77546 0.92089 0.95467 0.95048 0.85556 0.90444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 8.54 71.98 0.61 -0.72 16 2 C 0.17 2.24 1.20 3.60 0.00 2.25 16 3 C -0.14 -2.49 7.00 71.98 0.50 -1.99 16 4 C -0.16 -1.55 8.49 71.98 0.61 -0.94 16 5 N -0.60 -9.68 2.76 -771.07 -2.13 -11.81 16 6 C 0.10 1.16 6.21 86.83 0.54 1.70 16 7 C 0.16 3.00 3.43 46.05 0.16 3.16 16 8 H 0.12 2.35 7.72 -2.39 -0.02 2.33 16 9 N -0.72 -17.76 5.12 -452.77 -2.32 -20.08 16 10 C 0.71 26.54 8.49 179.06 1.52 28.06 16 11 O -0.64 -29.13 16.41 -4.01 -0.07 -29.20 16 12 N -0.64 -24.88 3.32 -829.30 -2.76 -27.64 16 13 C 0.11 3.38 6.58 86.93 0.57 3.96 16 14 C -0.11 -4.16 6.24 32.07 0.20 -3.96 16 15 C 0.23 11.15 0.85 -10.35 -0.01 11.14 16 16 O -0.59 -28.82 13.08 -148.98 -1.95 -30.77 16 17 C -0.56 -29.22 8.12 25.60 0.21 -29.01 16 18 H 0.06 3.30 7.78 -2.91 -0.02 3.28 16 19 C 0.03 1.41 5.27 84.65 0.45 1.85 16 20 N -0.91 -49.52 10.97 21.45 0.24 -49.28 16 21 Si 0.96 42.30 29.54 68.60 2.03 44.33 16 22 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 23 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 24 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 25 C 0.14 7.02 5.23 86.73 0.45 7.47 16 26 C -0.17 -3.83 6.58 30.59 0.20 -3.63 16 27 C 0.52 12.38 7.84 87.90 0.69 13.07 16 28 O -0.57 -18.18 13.99 -3.02 -0.04 -18.22 16 29 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 30 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.08 0.45 7.90 -2.39 -0.02 0.43 16 32 H 0.04 1.00 7.08 -2.38 -0.02 0.98 16 33 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.05 1.06 7.06 -2.39 -0.02 1.04 16 35 H 0.08 0.53 7.21 -2.39 -0.02 0.52 16 36 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.11 0.83 7.02 -2.39 -0.02 0.81 16 39 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.41 8.00 7.05 -92.71 -0.65 7.35 16 41 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 42 H 0.09 2.19 7.29 -2.39 -0.02 2.17 16 43 H 0.08 2.89 8.04 -2.39 -0.02 2.87 16 44 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 45 H 0.38 19.38 7.45 -74.06 -0.55 18.83 16 46 H 0.27 14.04 8.31 -92.70 -0.77 13.27 16 47 H 0.03 1.50 7.81 -2.39 -0.02 1.48 16 48 H 0.03 1.71 7.93 -2.39 -0.02 1.69 16 49 H 0.13 2.44 8.14 -2.39 -0.02 2.42 16 50 H 0.08 2.27 8.09 -2.39 -0.02 2.25 16 Total: -1.00 -72.46 393.60 -0.54 -72.99 By element: Atomic # 1 Polarization: 37.50 SS G_CDS: -0.25 Total: 37.25 kcal Atomic # 6 Polarization: 25.71 SS G_CDS: 6.71 Total: 32.42 kcal Atomic # 7 Polarization: -101.84 SS G_CDS: -6.97 Total: -108.81 kcal Atomic # 8 Polarization: -76.13 SS G_CDS: -2.06 Total: -78.19 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal Total: -72.46 -0.54 -72.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591977558.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.798 kcal (2) G-P(sol) polarization free energy of solvation -72.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds