Wall clock time and date at job start Sat Apr 11 2020 05:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46625 * 2 1 4 4 N 1.46505 * 109.46860 * 179.97438 * 3 2 1 5 5 C 1.46819 * 124.33637 * 269.93220 * 4 3 2 6 6 C 1.54478 * 105.44704 * 196.99683 * 5 4 3 7 7 H 1.09001 * 110.96802 * 92.76526 * 6 5 4 8 8 C 1.52992 * 110.97157 * 216.48994 * 6 5 4 9 9 N 1.46498 * 109.47381 * 181.91105 * 8 6 5 10 10 C 1.34770 * 120.00591 * 180.02562 * 9 8 6 11 11 O 1.21592 * 119.99563 * 0.02562 * 10 9 8 12 12 N 1.34780 * 120.00590 * 180.02562 * 10 9 8 13 13 C 1.47743 * 125.81887 * 359.90727 * 12 10 9 14 14 C 1.54909 * 104.83995 * 155.82587 * 13 12 10 15 15 C 1.55159 * 101.57990 * 37.09908 * 14 13 12 16 16 O 1.42904 * 110.72203 * 82.85631 * 15 14 13 17 17 C 1.50700 * 110.71873 * 206.13106 * 15 14 13 18 18 H 1.08003 * 120.00085 * 354.97623 * 17 15 14 19 19 C 1.37875 * 119.99979 * 174.97054 * 17 15 14 20 20 N 1.31519 * 120.00109 * 0.02562 * 19 17 15 21 21 Si 1.86803 * 120.00250 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47078 * 60.00081 * 21 19 17 23 23 H 1.48497 * 109.47257 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47029 * 300.00617 * 21 19 17 25 25 C 1.47020 * 125.64983 * 179.97438 * 12 10 9 26 26 C 1.54623 * 101.79747 * 334.63439 * 6 5 4 27 27 C 1.34427 * 124.34681 * 89.97011 * 4 3 2 28 28 O 1.21278 * 124.94565 * 359.62560 * 27 4 3 29 29 H 1.09011 * 109.47155 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47169 * 299.99886 * 1 2 3 31 31 H 1.08998 * 109.47588 * 60.00780 * 1 2 3 32 32 H 1.08996 * 109.47343 * 239.99747 * 2 1 3 33 33 H 1.08999 * 109.47069 * 119.99782 * 2 1 3 34 34 H 1.08996 * 109.47467 * 59.99823 * 3 2 1 35 35 H 1.08996 * 109.46784 * 299.99434 * 3 2 1 36 36 H 1.08997 * 110.23505 * 78.01988 * 5 4 3 37 37 H 1.09000 * 110.27971 * 316.00789 * 5 4 3 38 38 H 1.09006 * 109.47058 * 61.91291 * 8 6 5 39 39 H 1.08994 * 109.47577 * 301.91358 * 8 6 5 40 40 H 0.97005 * 119.99529 * 0.02562 * 9 8 6 41 41 H 1.09003 * 110.29227 * 37.02448 * 13 12 10 42 42 H 1.08996 * 110.53057 * 274.75660 * 13 12 10 43 43 H 1.08994 * 111.00889 * 279.01887 * 14 13 12 44 44 H 1.09001 * 111.03628 * 155.18095 * 14 13 12 45 45 H 0.96701 * 113.99408 * 185.02539 * 16 15 14 46 46 H 0.96997 * 120.00188 * 179.97438 * 20 19 17 47 47 H 1.09002 * 109.88367 * 61.60808 * 25 12 10 48 48 H 1.09000 * 109.88319 * 300.59426 * 25 12 10 49 49 H 1.09004 * 110.48673 * 143.45896 * 26 6 5 50 50 H 1.09007 * 110.48501 * 265.96244 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.3325 1.4443 1.2133 6 6 5.7406 1.8790 0.7499 7 1 5.8670 2.9574 0.8453 8 6 6.8273 1.1324 1.5261 9 7 8.1460 1.6016 1.0938 10 6 9.2605 1.0809 1.6444 11 8 9.1714 0.2213 2.4997 12 7 10.4737 1.5130 1.2470 13 6 10.7309 2.5450 0.2215 14 6 12.1324 3.1071 0.5671 15 6 12.8732 1.8282 1.0392 16 8 13.3758 1.0933 -0.0786 17 6 13.9862 2.1782 1.9931 18 1 14.2215 3.2134 2.1918 19 6 14.7039 1.1769 2.6121 20 7 14.4176 -0.0837 2.3698 21 14 16.0831 1.6107 3.7951 22 1 15.5362 2.4091 4.9215 23 1 16.6937 0.3638 4.3220 24 1 17.1159 2.4041 3.0817 25 6 11.7648 1.0339 1.7618 26 6 5.7300 1.4524 -0.7363 27 6 4.2638 1.4419 -1.1089 28 8 3.8355 1.4346 -2.2435 29 1 -0.3634 -1.0278 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6765 1.9564 0.8899 35 1 1.6766 1.9562 -0.8900 36 1 4.3697 0.4444 1.6457 37 1 3.9379 2.1553 1.9391 38 1 6.7412 0.0629 1.3341 39 1 6.7064 1.3209 2.5928 40 1 8.2171 2.2872 0.4112 41 1 9.9805 3.3333 0.2821 42 1 10.7348 2.1018 -0.7742 43 1 12.0716 3.8422 1.3696 44 1 12.6114 3.5331 -0.3145 45 1 13.7800 0.2469 0.1569 46 1 14.9228 -0.7881 2.8050 47 1 11.8754 -0.0302 1.5529 48 1 11.8235 1.2087 2.8361 49 1 6.2731 2.1757 -1.3447 50 1 6.1619 0.4582 -0.8510 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592030861.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:31 Heat of formation + Delta-G solvation = -142.089926 kcal Electronic energy + Delta-G solvation = -29814.536401 eV Core-core repulsion = 25647.298228 eV Total energy + Delta-G solvation = -4167.238173 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.65852 -41.08081 -39.17133 -37.86926 -36.59609 -36.01857 -34.96382 -34.21166 -32.53133 -31.49978 -29.63258 -29.14005 -27.73941 -26.86322 -25.61701 -24.06282 -22.78790 -21.95898 -21.42513 -21.05091 -20.31253 -19.20775 -18.81295 -17.88140 -17.62339 -17.29321 -16.74483 -16.70686 -16.46432 -16.17128 -15.70698 -15.43548 -15.36835 -14.79917 -14.78881 -14.70050 -14.61469 -14.47644 -14.00480 -13.73566 -13.50792 -13.45433 -13.36326 -13.10478 -13.05763 -12.80693 -12.65107 -12.50389 -12.34797 -12.30717 -12.28935 -12.22773 -12.04932 -11.94481 -11.66074 -11.28259 -11.13293 -10.87981 -10.62914 -10.27244 -10.18773 -9.73882 -9.35251 -8.23995 -6.39811 1.43857 1.44538 1.50830 1.52475 1.66002 2.04838 2.19541 2.39590 3.02789 3.06309 3.26619 3.48411 3.71906 3.84028 3.93491 4.02302 4.06183 4.10601 4.20539 4.32062 4.34296 4.42203 4.53416 4.59536 4.60258 4.64185 4.65746 4.74227 4.75196 4.77086 4.87777 4.92924 5.09325 5.13507 5.15571 5.17180 5.17381 5.27473 5.33111 5.40011 5.52592 5.53041 5.61137 5.77022 6.06302 6.07936 6.22198 6.66977 7.10482 7.10935 7.29721 7.37148 7.61437 8.81753 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.028931 B = 0.001963 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.575489 B =14260.493658 C =14691.997371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.139 4.139 3 C 0.122 3.878 4 N -0.616 5.616 5 C 0.110 3.890 6 C -0.093 4.093 7 H 0.123 0.877 8 C 0.151 3.849 9 N -0.728 5.728 10 C 0.711 3.289 11 O -0.644 6.644 12 N -0.637 5.637 13 C 0.108 3.892 14 C -0.111 4.111 15 C 0.231 3.769 16 O -0.587 6.587 17 C -0.558 4.558 18 H 0.067 0.933 19 C 0.025 3.975 20 N -0.915 5.915 21 Si 0.962 3.038 22 H -0.272 1.272 23 H -0.286 1.286 24 H -0.268 1.268 25 C 0.143 3.857 26 C -0.151 4.151 27 C 0.509 3.491 28 O -0.584 6.584 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.052 0.948 32 H 0.038 0.962 33 H 0.072 0.928 34 H 0.109 0.891 35 H 0.066 0.934 36 H 0.084 0.916 37 H 0.114 0.886 38 H 0.059 0.941 39 H 0.074 0.926 40 H 0.410 0.590 41 H 0.105 0.895 42 H 0.070 0.930 43 H 0.084 0.916 44 H 0.089 0.911 45 H 0.374 0.626 46 H 0.269 0.731 47 H 0.025 0.975 48 H 0.029 0.971 49 H 0.114 0.886 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.088 6.593 -2.143 25.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.177 4.177 3 C 0.000 4.000 4 N -0.348 5.348 5 C -0.012 4.012 6 C -0.112 4.112 7 H 0.141 0.859 8 C 0.027 3.973 9 N -0.385 5.385 10 C 0.413 3.587 11 O -0.527 6.527 12 N -0.374 5.374 13 C -0.014 4.014 14 C -0.149 4.149 15 C 0.191 3.809 16 O -0.395 6.395 17 C -0.596 4.596 18 H 0.086 0.914 19 C -0.176 4.176 20 N -0.554 5.554 21 Si 0.787 3.213 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.193 1.193 25 C 0.019 3.981 26 C -0.190 4.190 27 C 0.298 3.702 28 O -0.464 6.464 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.072 0.928 32 H 0.057 0.943 33 H 0.091 0.909 34 H 0.128 0.872 35 H 0.085 0.915 36 H 0.102 0.898 37 H 0.132 0.868 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.247 0.753 41 H 0.123 0.877 42 H 0.089 0.911 43 H 0.102 0.898 44 H 0.107 0.893 45 H 0.223 0.777 46 H 0.078 0.922 47 H 0.044 0.956 48 H 0.047 0.953 49 H 0.132 0.868 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -24.743 6.288 -2.356 25.639 hybrid contribution 1.332 -0.804 0.615 1.673 sum -23.411 5.485 -1.742 24.108 Atomic orbital electron populations 1.21675 0.93747 1.02431 1.02574 1.21873 0.97370 0.96801 1.01704 1.21600 0.77114 0.97323 1.03927 1.48482 1.06876 1.72114 1.07343 1.22233 0.88369 1.03924 0.86717 1.22275 0.93534 1.02683 0.92724 0.85924 1.21179 0.79023 0.98000 0.99080 1.44857 1.03780 1.44934 1.44955 1.15706 0.80380 0.81276 0.81346 1.90861 1.86478 1.37406 1.37928 1.47967 1.04301 1.42688 1.42433 1.22451 0.97873 0.90081 0.90958 1.22718 0.93847 0.96307 1.02028 1.19736 0.89246 0.88193 0.83752 1.86100 1.80000 1.37355 1.36039 1.21816 1.17642 0.93718 1.26409 0.91443 1.25812 0.99260 0.94881 0.97597 1.69808 1.41607 0.99691 1.44320 0.85550 0.79204 0.77519 0.79015 1.19723 1.21121 1.19344 1.22284 0.81634 0.97190 0.96969 1.22491 0.93036 1.05540 0.97983 1.21357 0.90466 0.74234 0.84102 1.90696 1.79717 1.52831 1.23203 0.92257 0.90903 0.92841 0.94319 0.90940 0.87242 0.91511 0.89762 0.86793 0.92314 0.90731 0.75330 0.87674 0.91133 0.89768 0.89293 0.77673 0.92162 0.95638 0.95265 0.86798 0.87844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.91 71.98 0.71 -0.63 16 2 C -0.14 -1.71 6.26 30.59 0.19 -1.52 16 3 C 0.12 1.44 5.93 86.38 0.51 1.95 16 4 N -0.62 -8.66 2.93 -817.85 -2.40 -11.05 16 5 C 0.11 0.92 6.92 86.82 0.60 1.53 16 6 C -0.09 -0.94 3.18 -9.74 -0.03 -0.98 16 7 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 8 C 0.15 2.63 4.96 86.38 0.43 3.06 16 9 N -0.73 -16.90 5.41 -478.55 -2.59 -19.48 16 10 C 0.71 26.32 8.49 179.06 1.52 27.84 16 11 O -0.64 -30.04 16.67 -4.01 -0.07 -30.11 16 12 N -0.64 -24.75 3.34 -828.94 -2.77 -27.51 16 13 C 0.11 3.24 6.59 86.79 0.57 3.82 16 14 C -0.11 -4.02 6.22 31.99 0.20 -3.82 16 15 C 0.23 10.96 0.85 -10.35 -0.01 10.95 16 16 O -0.59 -29.25 13.08 -148.98 -1.95 -31.20 16 17 C -0.56 -28.88 8.12 25.60 0.21 -28.68 16 18 H 0.07 3.38 7.78 -2.91 -0.02 3.35 16 19 C 0.03 1.33 5.28 84.65 0.45 1.78 16 20 N -0.92 -49.81 10.98 21.45 0.24 -49.57 16 21 Si 0.96 41.79 29.54 68.60 2.03 43.82 16 22 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 23 H -0.29 -12.33 7.11 99.48 0.71 -11.62 16 24 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 25 C 0.14 7.03 5.23 86.73 0.45 7.48 16 26 C -0.15 -2.19 6.27 30.58 0.19 -2.00 16 27 C 0.51 10.40 8.02 87.90 0.71 11.11 16 28 O -0.58 -17.52 17.60 -3.02 -0.05 -17.57 16 29 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 30 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.07 1.02 7.93 -2.39 -0.02 1.00 16 36 H 0.08 0.68 7.89 -2.39 -0.02 0.66 16 37 H 0.11 0.39 8.14 -2.39 -0.02 0.38 16 38 H 0.06 1.19 8.01 -2.38 -0.02 1.17 16 39 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.41 6.98 6.93 -92.70 -0.64 6.34 16 41 H 0.11 2.15 7.31 -2.39 -0.02 2.13 16 42 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 43 H 0.08 2.90 8.04 -2.39 -0.02 2.88 16 44 H 0.09 2.98 8.14 -2.39 -0.02 2.96 16 45 H 0.37 19.61 7.47 -74.06 -0.55 19.05 16 46 H 0.27 14.11 8.31 -92.71 -0.77 13.34 16 47 H 0.03 1.40 7.92 -2.39 -0.02 1.38 16 48 H 0.03 1.59 7.81 -2.39 -0.02 1.58 16 49 H 0.11 1.45 8.14 -2.38 -0.02 1.43 16 50 H 0.10 1.68 7.81 -2.38 -0.02 1.66 16 Total: -1.00 -75.83 404.00 -1.11 -76.94 By element: Atomic # 1 Polarization: 34.10 SS G_CDS: -0.25 Total: 33.85 kcal Atomic # 6 Polarization: 25.19 SS G_CDS: 6.70 Total: 31.90 kcal Atomic # 7 Polarization: -100.11 SS G_CDS: -7.52 Total: -107.62 kcal Atomic # 8 Polarization: -76.81 SS G_CDS: -2.07 Total: -78.88 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal Total: -75.83 -1.11 -76.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592030861.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.154 kcal (2) G-P(sol) polarization free energy of solvation -75.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds