Wall clock time and date at job start Sat Apr 11 2020 05:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46819 * 2 1 4 4 N 1.46504 * 109.46992 * 179.97438 * 3 2 1 5 5 C 1.46759 * 124.34898 * 89.99740 * 4 3 2 6 6 C 1.54478 * 105.47120 * 163.00408 * 5 4 3 7 7 H 1.09003 * 110.96755 * 143.57409 * 6 5 4 8 8 C 1.53000 * 110.97422 * 267.29625 * 6 5 4 9 9 N 1.46494 * 109.47422 * 181.91122 * 8 6 5 10 10 C 1.34775 * 120.00094 * 179.97438 * 9 8 6 11 11 O 1.21585 * 119.99988 * 0.02562 * 10 9 8 12 12 N 1.34772 * 120.00065 * 179.97438 * 10 9 8 13 13 C 1.47426 * 125.64987 * 359.97234 * 12 10 9 14 14 C 1.54912 * 104.83264 * 204.16075 * 13 12 10 15 15 C 1.55157 * 101.57717 * 322.98418 * 14 13 12 16 16 O 1.42897 * 110.87569 * 277.06718 * 15 14 13 17 17 C 1.50702 * 110.71748 * 153.86625 * 15 14 13 18 18 H 1.08002 * 120.00299 * 5.02888 * 17 15 14 19 19 C 1.37884 * 119.99942 * 184.74446 * 17 15 14 20 20 N 1.31514 * 119.99698 * 0.28408 * 19 17 15 21 21 Si 1.86794 * 119.99837 * 180.27476 * 19 17 15 22 22 H 1.48501 * 109.47188 * 90.00793 * 21 19 17 23 23 H 1.48501 * 109.47085 * 210.00372 * 21 19 17 24 24 H 1.48498 * 109.47634 * 330.00608 * 21 19 17 25 25 C 1.47024 * 125.64954 * 180.02562 * 12 10 9 26 26 C 1.54630 * 101.79895 * 25.43663 * 6 5 4 27 27 C 1.34413 * 124.34778 * 270.02501 * 4 3 2 28 28 O 1.21285 * 124.94512 * 0.41596 * 27 4 3 29 29 H 1.09001 * 109.47354 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47287 * 299.99997 * 1 2 3 31 31 H 1.09001 * 109.47145 * 60.00263 * 1 2 3 32 32 H 1.08999 * 109.47287 * 240.00003 * 2 1 3 33 33 H 1.09000 * 109.46633 * 119.99640 * 2 1 3 34 34 H 1.08999 * 109.47189 * 59.99943 * 3 2 1 35 35 H 1.09001 * 109.47047 * 299.99797 * 3 2 1 36 36 H 1.09006 * 110.24655 * 44.00439 * 5 4 3 37 37 H 1.08998 * 110.24576 * 282.00712 * 5 4 3 38 38 H 1.08997 * 109.46724 * 61.90773 * 8 6 5 39 39 H 1.09002 * 109.46821 * 301.91688 * 8 6 5 40 40 H 0.97000 * 119.99932 * 0.02562 * 9 8 6 41 41 H 1.09000 * 110.36142 * 322.99124 * 13 12 10 42 42 H 1.08995 * 110.36935 * 85.20400 * 13 12 10 43 43 H 1.08999 * 111.00250 * 204.91370 * 14 13 12 44 44 H 1.08996 * 111.00684 * 81.05892 * 14 13 12 45 45 H 0.96698 * 114.00670 * 177.45293 * 16 15 14 46 46 H 0.97005 * 119.99651 * 179.97438 * 20 19 17 47 47 H 1.08994 * 109.88361 * 59.49124 * 25 12 10 48 48 H 1.09003 * 109.88208 * 298.33021 * 25 12 10 49 49 H 1.09003 * 110.48230 * 93.85657 * 26 6 5 50 50 H 1.09000 * 110.48387 * 216.50063 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.3336 1.4424 -1.2107 6 6 5.7414 1.8777 -0.7471 7 1 6.5159 1.3456 -1.2996 8 6 5.9186 3.3914 -0.8818 9 7 7.2770 3.7620 -0.4774 10 6 7.6627 5.0528 -0.5148 11 8 6.8832 5.9098 -0.8837 12 7 8.9123 5.3938 -0.1422 13 6 9.9541 4.4613 0.3254 14 6 10.9083 5.3302 1.1823 15 6 10.9105 6.6643 0.3901 16 8 11.8386 6.6105 -0.6952 17 6 11.2236 7.8241 1.2999 18 1 11.4876 7.6451 2.3317 19 6 11.1788 9.1136 0.8135 20 7 10.8573 9.3315 -0.4430 21 14 11.5744 10.5507 1.9393 22 1 13.0292 10.8425 1.8769 23 1 10.8105 11.7468 1.5022 24 1 11.1983 10.2054 3.3337 25 6 9.4619 6.7574 -0.1338 26 6 5.7304 1.4519 0.7394 27 6 4.2629 1.4423 1.1107 28 8 3.8336 1.4347 2.2450 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 3.9394 2.1527 -1.9375 37 1 4.3710 0.4420 -1.6419 38 1 5.1975 3.8999 -0.2419 39 1 5.7551 3.6855 -1.9186 40 1 7.8990 3.0782 -0.1834 41 1 9.5115 3.6720 0.9330 42 1 10.4876 4.0323 -0.5227 43 1 11.9071 4.8951 1.2175 44 1 10.5104 5.4731 2.1869 45 1 11.8486 7.4066 -1.2440 46 1 10.8255 10.2387 -0.7851 47 1 8.8692 7.3919 0.5251 48 1 9.4589 7.1645 -1.1449 49 1 6.1597 0.4566 0.8542 50 1 6.2737 2.1753 1.3474 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592030862.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:34 Heat of formation + Delta-G solvation = -142.366704 kcal Electronic energy + Delta-G solvation = -30052.840720 eV Core-core repulsion = 25885.590545 eV Total energy + Delta-G solvation = -4167.250175 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.72633 -41.09570 -39.18489 -37.86866 -36.57955 -36.06319 -34.95159 -34.21642 -32.47643 -31.51757 -29.64060 -29.07603 -27.75552 -26.89816 -25.83032 -24.10357 -22.76308 -21.92071 -21.44779 -21.07546 -20.31798 -19.25745 -18.86054 -17.92203 -17.54847 -17.09483 -16.89403 -16.76463 -16.52908 -16.17886 -15.64689 -15.46867 -15.40737 -14.83385 -14.76364 -14.65199 -14.56029 -14.42564 -14.08287 -13.84006 -13.60024 -13.50815 -13.29295 -13.12694 -13.03521 -12.84902 -12.53776 -12.53022 -12.38922 -12.31295 -12.28226 -12.27317 -12.07494 -11.95046 -11.65392 -11.32618 -11.15120 -10.85746 -10.64823 -10.28841 -10.23723 -9.72236 -9.37746 -8.26320 -6.41905 1.40342 1.42942 1.51899 1.52325 1.67780 2.05512 2.15592 2.37663 3.00470 3.04493 3.35663 3.48389 3.63790 3.81842 3.90495 4.00902 4.06538 4.08987 4.19331 4.33903 4.38524 4.41558 4.52087 4.61458 4.62690 4.64346 4.67549 4.69777 4.74581 4.77102 4.88871 4.92999 5.07419 5.12327 5.13625 5.15740 5.18326 5.26311 5.33721 5.38539 5.49594 5.51705 5.61154 5.75656 6.03918 6.11163 6.19789 6.64988 7.08216 7.12856 7.28565 7.35670 7.58208 8.79496 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022833 B = 0.002100 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.003343 B =13328.109058 C =13533.255575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.132 4.132 3 C 0.118 3.882 4 N -0.619 5.619 5 C 0.109 3.891 6 C -0.095 4.095 7 H 0.147 0.853 8 C 0.146 3.854 9 N -0.726 5.726 10 C 0.709 3.291 11 O -0.647 6.647 12 N -0.636 5.636 13 C 0.108 3.892 14 C -0.112 4.112 15 C 0.232 3.768 16 O -0.586 6.586 17 C -0.558 4.558 18 H 0.066 0.934 19 C 0.025 3.975 20 N -0.915 5.915 21 Si 0.962 3.038 22 H -0.271 1.271 23 H -0.287 1.287 24 H -0.269 1.269 25 C 0.143 3.857 26 C -0.149 4.149 27 C 0.502 3.498 28 O -0.590 6.590 29 H 0.064 0.936 30 H 0.047 0.953 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.042 0.958 34 H 0.056 0.944 35 H 0.103 0.897 36 H 0.097 0.903 37 H 0.113 0.887 38 H 0.036 0.964 39 H 0.072 0.928 40 H 0.412 0.588 41 H 0.103 0.897 42 H 0.076 0.924 43 H 0.092 0.908 44 H 0.080 0.920 45 H 0.375 0.625 46 H 0.270 0.730 47 H 0.025 0.975 48 H 0.027 0.973 49 H 0.138 0.862 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.635 -22.698 -4.345 26.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.170 4.170 3 C -0.003 4.003 4 N -0.351 5.351 5 C -0.013 4.013 6 C -0.114 4.114 7 H 0.165 0.835 8 C 0.022 3.978 9 N -0.384 5.384 10 C 0.411 3.589 11 O -0.530 6.530 12 N -0.373 5.373 13 C -0.014 4.014 14 C -0.150 4.150 15 C 0.192 3.808 16 O -0.393 6.393 17 C -0.596 4.596 18 H 0.084 0.916 19 C -0.176 4.176 20 N -0.554 5.554 21 Si 0.787 3.213 22 H -0.196 1.196 23 H -0.212 1.212 24 H -0.194 1.194 25 C 0.019 3.981 26 C -0.188 4.188 27 C 0.292 3.708 28 O -0.471 6.471 29 H 0.083 0.917 30 H 0.066 0.934 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.121 0.879 36 H 0.115 0.885 37 H 0.131 0.869 38 H 0.055 0.945 39 H 0.091 0.909 40 H 0.249 0.751 41 H 0.121 0.879 42 H 0.094 0.906 43 H 0.110 0.890 44 H 0.099 0.901 45 H 0.225 0.775 46 H 0.079 0.921 47 H 0.043 0.957 48 H 0.046 0.954 49 H 0.155 0.845 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -13.496 -22.569 -3.957 26.593 hybrid contribution 0.108 1.925 0.531 2.000 sum -13.388 -20.643 -3.426 24.842 Atomic orbital electron populations 1.21693 0.94117 1.02551 1.02281 1.21821 0.97013 0.96043 1.02146 1.21580 0.77572 0.97889 1.03271 1.48497 1.06776 1.72119 1.07725 1.22349 0.88151 1.04376 0.86387 1.22419 0.99739 0.93501 0.95703 0.83532 1.21242 0.81450 0.94897 1.00203 1.44847 1.15876 1.05319 1.72336 1.15758 0.80848 0.83738 0.78578 1.90855 1.53960 1.51018 1.57152 1.47900 1.10848 1.10221 1.68309 1.22420 0.88492 0.92214 0.98232 1.22719 1.00107 0.94111 0.98014 1.19704 0.82988 0.93638 0.84478 1.86076 1.63645 1.44676 1.44946 1.21855 1.48270 0.91727 0.97740 0.91553 1.25813 0.93514 1.01652 0.96633 1.69804 1.47995 1.22503 1.15076 0.85497 0.78344 0.78304 0.79156 1.19627 1.21234 1.19356 1.22299 0.96744 0.80638 0.98429 1.22524 0.92555 1.06229 0.97534 1.21589 0.91018 0.74153 0.84065 1.90694 1.79889 1.53006 1.23509 0.91734 0.93381 0.91181 0.90063 0.93941 0.92564 0.87900 0.88523 0.86944 0.94518 0.90940 0.75065 0.87885 0.90572 0.88984 0.90143 0.77545 0.92119 0.95652 0.95412 0.84455 0.88886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.91 71.98 0.71 -0.74 16 2 C -0.13 -1.58 6.26 30.60 0.19 -1.39 16 3 C 0.12 1.71 5.93 86.38 0.51 2.22 16 4 N -0.62 -9.67 2.93 -817.86 -2.40 -12.07 16 5 C 0.11 0.86 6.90 86.83 0.60 1.46 16 6 C -0.09 -0.91 3.18 -9.74 -0.03 -0.94 16 7 H 0.15 0.42 8.14 -2.39 -0.02 0.40 16 8 C 0.15 2.91 4.97 86.38 0.43 3.34 16 9 N -0.73 -17.96 5.15 -478.56 -2.47 -20.42 16 10 C 0.71 27.51 8.49 179.06 1.52 29.03 16 11 O -0.65 -31.73 16.67 -3.98 -0.07 -31.79 16 12 N -0.64 -25.42 3.33 -829.77 -2.76 -28.18 16 13 C 0.11 3.28 6.57 86.86 0.57 3.86 16 14 C -0.11 -4.11 6.23 31.99 0.20 -3.91 16 15 C 0.23 11.15 0.86 -10.35 -0.01 11.14 16 16 O -0.59 -29.09 13.09 -148.98 -1.95 -31.04 16 17 C -0.56 -29.33 8.12 25.60 0.21 -29.12 16 18 H 0.07 3.40 7.78 -2.91 -0.02 3.38 16 19 C 0.02 1.31 5.26 84.66 0.45 1.76 16 20 N -0.91 -50.17 10.95 21.45 0.23 -49.93 16 21 Si 0.96 42.52 29.54 68.60 2.03 44.54 16 22 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 23 H -0.29 -12.67 7.11 99.48 0.71 -11.97 16 24 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 25 C 0.14 7.16 5.25 86.73 0.46 7.61 16 26 C -0.15 -2.04 6.32 30.62 0.19 -1.85 16 27 C 0.50 11.14 8.02 87.93 0.71 11.85 16 28 O -0.59 -19.34 17.60 -3.05 -0.05 -19.39 16 29 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.06 1.10 7.93 -2.39 -0.02 1.08 16 35 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.10 0.62 7.91 -2.38 -0.02 0.60 16 37 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 38 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.41 7.18 6.91 -92.71 -0.64 6.54 16 41 H 0.10 2.18 7.30 -2.39 -0.02 2.17 16 42 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 43 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 44 H 0.08 2.89 8.04 -2.39 -0.02 2.87 16 45 H 0.38 19.63 7.41 -74.06 -0.55 19.09 16 46 H 0.27 14.19 8.31 -92.70 -0.77 13.42 16 47 H 0.02 1.42 7.81 -2.39 -0.02 1.41 16 48 H 0.03 1.55 7.94 -2.39 -0.02 1.53 16 49 H 0.14 1.11 8.14 -2.39 -0.02 1.09 16 50 H 0.09 1.59 7.64 -2.39 -0.02 1.57 16 Total: -1.00 -79.88 403.66 -0.97 -80.86 By element: Atomic # 1 Polarization: 33.34 SS G_CDS: -0.24 Total: 33.10 kcal Atomic # 6 Polarization: 27.62 SS G_CDS: 6.70 Total: 34.32 kcal Atomic # 7 Polarization: -103.21 SS G_CDS: -7.39 Total: -110.60 kcal Atomic # 8 Polarization: -80.15 SS G_CDS: -2.07 Total: -82.22 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.54 kcal Total: -79.88 -0.97 -80.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592030862.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.510 kcal (2) G-P(sol) polarization free energy of solvation -79.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds