Wall clock time and date at job start Sat Apr 11 2020 05:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.47089 * 2 1 4 4 C 1.52998 * 109.47007 * 120.00015 * 2 1 3 5 5 N 1.46498 * 109.47166 * 239.99492 * 2 1 3 6 6 C 1.46758 * 124.34825 * 179.72100 * 5 2 1 7 7 C 1.54667 * 105.37983 * 162.86018 * 6 5 2 8 8 C 1.54626 * 101.68376 * 25.76744 * 7 6 5 9 9 H 1.09000 * 110.48630 * 216.30890 * 8 7 6 10 10 N 1.46497 * 110.59522 * 93.72427 * 8 7 6 11 11 C 1.34779 * 120.00032 * 158.70488 * 10 8 7 12 12 O 1.21592 * 119.99936 * 0.02562 * 11 10 8 13 13 N 1.34774 * 120.00381 * 179.97438 * 11 10 8 14 14 C 1.47430 * 125.64617 * 359.68828 * 13 11 10 15 15 C 1.55126 * 104.72076 * 155.82116 * 14 13 11 16 16 C 1.55156 * 101.48862 * 37.29491 * 15 14 13 17 17 O 1.42905 * 110.71714 * 82.69601 * 16 15 14 18 18 C 1.50697 * 110.87466 * 205.90089 * 16 15 14 19 19 H 1.07993 * 120.00314 * 118.67344 * 18 16 15 20 20 C 1.37884 * 119.99899 * 298.67161 * 18 16 15 21 21 N 1.31514 * 120.00074 * 183.38865 * 20 18 16 22 22 Si 1.86805 * 119.99847 * 3.38469 * 20 18 16 23 23 H 1.48500 * 109.46735 * 84.83805 * 22 20 18 24 24 H 1.48498 * 109.47056 * 204.83680 * 22 20 18 25 25 H 1.48499 * 109.47157 * 324.84144 * 22 20 18 26 26 C 1.47023 * 125.65139 * 180.02562 * 13 11 10 27 27 C 1.34422 * 124.34665 * 0.03434 * 5 2 1 28 28 O 1.21274 * 124.94567 * 0.41739 * 27 5 2 29 29 H 1.08996 * 109.46904 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46698 * 60.00289 * 1 2 3 31 31 H 1.09000 * 109.47059 * 300.00592 * 1 2 3 32 32 H 1.08997 * 109.47146 * 59.99703 * 3 2 1 33 33 H 1.08998 * 109.46971 * 179.97438 * 3 2 1 34 34 H 1.09008 * 109.46988 * 299.99841 * 3 2 1 35 35 H 1.08995 * 109.47329 * 59.99597 * 4 2 1 36 36 H 1.09003 * 109.46845 * 180.02562 * 4 2 1 37 37 H 1.09006 * 109.47103 * 299.99528 * 4 2 1 38 38 H 1.09000 * 110.25026 * 281.98756 * 6 5 2 39 39 H 1.09003 * 110.24443 * 43.99347 * 6 5 2 40 40 H 1.09000 * 111.18883 * 267.59685 * 7 6 5 41 41 H 1.08994 * 110.85581 * 143.79940 * 7 6 5 42 42 H 0.97001 * 120.00175 * 338.70042 * 10 8 7 43 43 H 1.09001 * 110.36713 * 274.75126 * 14 13 11 44 44 H 1.08997 * 110.36220 * 37.07345 * 14 13 11 45 45 H 1.09000 * 111.18976 * 279.19200 * 15 14 13 46 46 H 1.09002 * 110.93916 * 155.29323 * 15 14 13 47 47 H 0.96706 * 113.99645 * 185.02983 * 17 16 15 48 48 H 0.96994 * 119.99827 * 180.02562 * 21 20 18 49 49 H 1.08998 * 109.88055 * 300.43605 * 26 13 11 50 50 H 1.09005 * 109.88431 * 61.44717 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 2.0184 -0.6907 -1.1961 6 6 3.4368 -0.8740 -1.5253 7 6 3.4694 -1.9976 -2.5877 8 6 2.0643 -1.8709 -3.2207 9 1 1.6717 -2.8547 -3.4778 10 7 2.1089 -1.0121 -4.4066 11 6 1.1400 -1.1001 -5.3393 12 8 0.2285 -1.8922 -5.1962 13 7 1.1806 -0.3097 -6.4301 14 6 2.2186 0.6950 -6.7249 15 6 2.1843 0.8563 -8.2674 16 6 0.6643 0.7403 -8.5565 17 8 0.0123 1.9941 -8.3447 18 6 0.4207 0.2450 -9.9588 19 1 -0.1021 -0.6863 -10.1194 20 6 0.8653 0.9808 -11.0368 21 7 0.5948 0.5831 -12.2608 22 14 1.8516 2.5426 -10.7586 23 1 3.2849 2.1976 -10.5799 24 1 1.7008 3.4390 -11.9329 25 1 1.3532 3.2327 -9.5418 26 6 0.1936 -0.3014 -7.5197 27 6 1.2249 -1.2327 -2.1360 28 8 0.0124 -1.2128 -2.1173 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 0.5139 0.8899 32 1 1.6767 1.9563 0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8901 35 1 1.6767 -1.7488 1.2493 36 1 3.1301 -0.7208 1.2494 37 1 1.6767 -0.2073 2.1393 38 1 3.8513 0.0475 -1.9341 39 1 3.9935 -1.1783 -0.6390 40 1 3.6015 -2.9750 -2.1235 41 1 4.2485 -1.8105 -3.3266 42 1 2.8358 -0.3799 -4.5206 43 1 1.9811 1.6403 -6.2369 44 1 3.1961 0.3360 -6.4031 45 1 2.7377 0.0566 -8.7596 46 1 2.5653 1.8331 -8.5655 47 1 -0.9497 1.9577 -8.4370 48 1 0.9079 1.1005 -13.0191 49 1 0.1433 -1.2874 -7.9817 50 1 -0.7861 -0.0242 -7.1305 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592038794.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:52 Heat of formation + Delta-G solvation = -85.364134 kcal Electronic energy + Delta-G solvation = -31378.021987 eV Core-core repulsion = 27213.243629 eV Total energy + Delta-G solvation = -4164.778358 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.19129 -39.70264 -37.79528 -36.83466 -36.26792 -34.51640 -33.44449 -32.42195 -30.45569 -29.67463 -28.38920 -27.79545 -27.70416 -26.91833 -24.99683 -22.69134 -22.57519 -21.39560 -20.22624 -19.60817 -18.77643 -18.03619 -17.38672 -17.00392 -16.61103 -15.65910 -15.51003 -15.13980 -14.88340 -14.81378 -14.44524 -14.39845 -14.25205 -14.12933 -13.41226 -13.35660 -13.23853 -13.22924 -12.94446 -12.75551 -12.49055 -12.40087 -12.21583 -12.12615 -11.96126 -11.86513 -11.77593 -11.50593 -11.40423 -11.36808 -11.29739 -11.14239 -10.57884 -10.30819 -10.11081 -10.02025 -9.73225 -9.03271 -8.90427 -8.82785 -8.74669 -8.50815 -8.05185 -6.21779 -4.33582 2.24243 2.66335 3.08730 3.26688 3.39949 3.50356 3.58340 4.04833 4.14735 4.19216 4.40469 4.43771 4.51265 4.61129 4.69195 4.72943 5.03398 5.07123 5.12736 5.17177 5.25435 5.28223 5.34683 5.37328 5.40481 5.45838 5.53208 5.55606 5.56758 5.65188 5.69064 5.73408 5.81773 5.97189 6.11715 6.13962 6.42064 6.46107 6.47630 6.55068 6.60578 6.68380 6.95700 7.09812 7.27597 7.49668 8.12848 8.18859 8.25947 8.74071 8.88838 8.89931 9.41007 10.88703 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021947 B = 0.002729 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.466169 B =10259.432239 C =10404.149542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.173 3.827 3 C -0.157 4.157 4 C -0.156 4.156 5 N -0.614 5.614 6 C 0.101 3.899 7 C -0.141 4.141 8 C 0.136 3.864 9 H 0.119 0.881 10 N -0.732 5.732 11 C 0.719 3.281 12 O -0.578 6.578 13 N -0.626 5.626 14 C 0.103 3.897 15 C -0.124 4.124 16 C 0.216 3.784 17 O -0.574 6.574 18 C -0.550 4.550 19 H 0.079 0.921 20 C 0.088 3.912 21 N -0.887 5.887 22 Si 0.876 3.124 23 H -0.283 1.283 24 H -0.300 1.300 25 H -0.228 1.228 26 C 0.115 3.885 27 C 0.506 3.494 28 O -0.499 6.499 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.397 0.603 43 H 0.064 0.936 44 H 0.060 0.940 45 H 0.089 0.911 46 H 0.074 0.926 47 H 0.366 0.634 48 H 0.267 0.733 49 H 0.073 0.927 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.802 -0.316 25.558 27.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.090 3.910 3 C -0.215 4.215 4 C -0.214 4.214 5 N -0.351 5.351 6 C -0.022 4.022 7 C -0.179 4.179 8 C 0.026 3.974 9 H 0.137 0.863 10 N -0.391 5.391 11 C 0.421 3.579 12 O -0.455 6.455 13 N -0.364 5.364 14 C -0.021 4.021 15 C -0.162 4.162 16 C 0.176 3.824 17 O -0.380 6.380 18 C -0.587 4.587 19 H 0.097 0.903 20 C -0.117 4.117 21 N -0.523 5.523 22 Si 0.704 3.296 23 H -0.210 1.210 24 H -0.228 1.228 25 H -0.151 1.151 26 C -0.008 4.008 27 C 0.290 3.710 28 O -0.371 6.371 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.117 0.883 41 H 0.117 0.883 42 H 0.232 0.768 43 H 0.082 0.918 44 H 0.078 0.922 45 H 0.107 0.893 46 H 0.093 0.907 47 H 0.213 0.787 48 H 0.077 0.923 49 H 0.091 0.909 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 10.007 -0.691 25.707 27.595 hybrid contribution 0.549 0.947 -0.199 1.113 sum 10.556 0.255 25.508 27.607 Atomic orbital electron populations 1.22102 0.92086 1.03652 1.02091 1.20453 0.95418 0.91459 0.83668 1.22187 1.01276 0.95275 1.02759 1.22179 1.01286 1.01076 0.96872 1.48459 1.07000 1.56901 1.22692 1.22069 0.82625 0.98647 0.98831 1.22961 0.96403 1.00062 0.98451 1.21363 0.95541 0.96299 0.84171 0.86299 1.44828 1.28780 1.44378 1.21136 1.15418 0.82220 0.81202 0.79089 1.90948 1.35803 1.40594 1.78162 1.47658 1.28473 1.38994 1.21225 1.22343 0.90133 0.91511 0.98068 1.23101 0.98303 1.02412 0.92372 1.19988 0.88804 0.80686 0.92940 1.86487 1.23372 1.34134 1.94042 1.21190 1.40186 1.09618 0.87721 0.90269 1.24956 0.94678 0.97412 0.94645 1.69928 1.44461 1.39556 0.98334 0.87065 0.79700 0.83892 0.78938 1.21020 1.22789 1.15110 1.22682 0.90493 1.01769 0.85807 1.21352 0.87921 0.78639 0.83069 1.90762 1.12695 1.57402 1.76265 0.91252 0.91169 0.92495 0.91340 0.92307 0.92067 0.92092 0.92299 0.91332 0.91127 0.90132 0.88349 0.88288 0.76816 0.91810 0.92170 0.89275 0.90736 0.78661 0.92340 0.90886 0.92516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 7.00 37.16 0.26 -1.29 16 2 C 0.17 1.51 1.20 -131.82 -0.16 1.35 16 3 C -0.16 -1.14 8.53 37.16 0.32 -0.83 16 4 C -0.16 -1.00 8.50 37.16 0.32 -0.68 16 5 N -0.61 -5.87 2.76 -157.46 -0.43 -6.31 16 6 C 0.10 0.61 6.60 -3.03 -0.02 0.59 16 7 C -0.14 -0.86 6.79 -25.00 -0.17 -1.03 16 8 C 0.14 1.59 3.22 -67.94 -0.22 1.37 16 9 H 0.12 1.60 7.66 -51.93 -0.40 1.20 16 10 N -0.73 -9.77 5.09 -58.69 -0.30 -10.07 16 11 C 0.72 13.41 8.48 -86.92 -0.74 12.67 16 12 O -0.58 -13.18 16.38 5.28 0.09 -13.10 16 13 N -0.63 -11.74 3.32 -176.09 -0.59 -12.32 16 14 C 0.10 1.66 6.58 -2.41 -0.02 1.64 16 15 C -0.12 -2.45 4.83 -24.47 -0.12 -2.56 16 16 C 0.22 4.80 0.67 -89.94 -0.06 4.74 16 17 O -0.57 -12.46 10.44 -35.23 -0.37 -12.82 16 18 C -0.55 -14.61 8.82 -34.44 -0.30 -14.91 16 19 H 0.08 2.31 7.82 -52.49 -0.41 1.90 16 20 C 0.09 2.43 5.47 -17.82 -0.10 2.33 16 21 N -0.89 -26.14 13.96 55.43 0.77 -25.37 16 22 Si 0.88 20.82 23.89 -169.99 -4.06 16.76 16 23 H -0.28 -6.48 7.08 56.52 0.40 -6.08 16 24 H -0.30 -7.33 7.11 56.52 0.40 -6.92 16 25 H -0.23 -5.29 5.50 56.52 0.31 -4.98 16 26 C 0.12 2.44 6.21 -3.06 -0.02 2.42 16 27 C 0.51 6.88 7.47 -10.86 -0.08 6.80 16 28 O -0.50 -9.09 13.99 5.56 0.08 -9.02 16 29 H 0.07 0.88 7.08 -51.93 -0.37 0.51 16 30 H 0.07 0.97 7.06 -51.93 -0.37 0.60 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.35 7.89 -51.93 -0.41 -0.06 16 34 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.30 7.22 -51.93 -0.37 -0.07 16 37 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.08 0.33 7.13 -51.93 -0.37 -0.04 16 40 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.10 0.46 8.04 -51.93 -0.42 0.04 16 42 H 0.40 4.16 7.05 -40.82 -0.29 3.88 16 43 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 44 H 0.06 0.75 7.29 -51.93 -0.38 0.37 16 45 H 0.09 1.78 8.04 -51.93 -0.42 1.36 16 46 H 0.07 1.49 5.00 -51.93 -0.26 1.23 16 47 H 0.37 7.04 9.08 45.56 0.41 7.45 16 48 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 49 H 0.07 1.66 7.66 -51.93 -0.40 1.26 16 50 H 0.06 1.21 8.06 -51.93 -0.42 0.79 16 LS Contribution 385.41 15.07 5.81 5.81 Total: -1.00 -36.02 385.41 -7.58 -43.60 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: -7.47 Total: 10.22 kcal Atomic # 6 Polarization: 13.71 SS G_CDS: -1.11 Total: 12.61 kcal Atomic # 7 Polarization: -53.52 SS G_CDS: -0.54 Total: -54.06 kcal Atomic # 8 Polarization: -34.73 SS G_CDS: -0.20 Total: -34.93 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.06 Total: 16.76 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.02 -7.58 -43.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592038794.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.766 kcal (2) G-P(sol) polarization free energy of solvation -36.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds