Wall clock time and date at job start Sat Apr 11 2020 05:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47012 * 2 1 4 4 C 1.52995 * 109.46811 * 239.99789 * 2 1 3 5 5 N 1.46504 * 109.46931 * 120.00058 * 2 1 3 6 6 C 1.46756 * 124.34949 * 180.02562 * 5 2 1 7 7 C 1.54686 * 105.53526 * 196.90033 * 6 5 2 8 8 C 1.54630 * 101.66999 * 334.74242 * 7 6 5 9 9 H 1.09000 * 110.48886 * 265.90502 * 8 7 6 10 10 N 1.46504 * 110.48660 * 143.39347 * 8 7 6 11 11 C 1.34773 * 120.00056 * 156.84159 * 10 8 7 12 12 O 1.21586 * 120.00081 * 359.97438 * 11 10 8 13 13 N 1.34776 * 119.99977 * 179.97438 * 11 10 8 14 14 C 1.47427 * 125.64784 * 0.04098 * 13 11 10 15 15 C 1.55121 * 104.94086 * 203.97115 * 14 13 11 16 16 C 1.55164 * 101.48435 * 323.22028 * 15 14 13 17 17 O 1.42897 * 110.72077 * 276.83194 * 16 15 14 18 18 C 1.50695 * 110.71674 * 153.73823 * 16 15 14 19 19 H 1.08004 * 120.00546 * 2.71829 * 18 16 15 20 20 C 1.37885 * 119.99721 * 182.44080 * 18 16 15 21 21 N 1.31514 * 120.00035 * 0.02562 * 20 18 16 22 22 Si 1.86803 * 119.99853 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47093 * 60.00328 * 22 20 18 24 24 H 1.48495 * 109.47002 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47239 * 300.00048 * 22 20 18 26 26 C 1.47022 * 125.64670 * 180.02562 * 13 11 10 27 27 C 1.34417 * 124.34640 * 0.02562 * 5 2 1 28 28 O 1.21276 * 124.94877 * 359.57709 * 27 5 2 29 29 H 1.09002 * 109.46867 * 300.00293 * 1 2 3 30 30 H 1.09000 * 109.46623 * 59.99635 * 1 2 3 31 31 H 1.08993 * 109.47296 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46753 * 179.97438 * 3 2 1 33 33 H 1.08992 * 109.47457 * 299.99557 * 3 2 1 34 34 H 1.09001 * 109.47152 * 60.00482 * 3 2 1 35 35 H 1.08993 * 109.47268 * 300.00112 * 4 2 1 36 36 H 1.09000 * 109.47057 * 60.00842 * 4 2 1 37 37 H 1.09003 * 109.46923 * 180.02562 * 4 2 1 38 38 H 1.08995 * 110.24633 * 315.99953 * 6 5 2 39 39 H 1.09005 * 110.24213 * 77.99326 * 6 5 2 40 40 H 1.09001 * 111.08681 * 216.62470 * 7 6 5 41 41 H 1.09001 * 110.94273 * 92.79743 * 7 6 5 42 42 H 0.97003 * 119.99456 * 336.84004 * 10 8 7 43 43 H 1.08997 * 110.36506 * 322.93037 * 14 13 11 44 44 H 1.08997 * 110.36640 * 85.14821 * 14 13 11 45 45 H 1.09007 * 111.16404 * 205.13499 * 15 14 13 46 46 H 1.08994 * 110.94415 * 81.21288 * 15 14 13 47 47 H 0.96702 * 114.00135 * 177.55750 * 17 16 15 48 48 H 0.97000 * 119.99706 * 179.97438 * 21 20 18 49 49 H 1.09000 * 109.88332 * 59.55730 * 26 13 11 50 50 H 1.09000 * 109.88173 * 298.38722 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0183 -0.6906 1.1962 6 6 3.4367 -0.8786 1.5229 7 6 3.4711 -1.9963 2.5917 8 6 2.0642 -1.8707 3.2209 9 1 2.0965 -1.2315 4.1033 10 7 1.5371 -3.1933 3.5665 11 6 0.5860 -3.3132 4.5138 12 8 0.1657 -2.3239 5.0820 13 7 0.1008 -4.5299 4.8312 14 6 0.5193 -5.8068 4.2248 15 6 -0.6838 -6.7630 4.4357 16 6 -1.1835 -6.3262 5.8382 17 8 -0.4246 -6.9649 6.8668 18 6 -2.6518 -6.6252 5.9980 19 1 -3.1908 -7.1237 5.2059 20 6 -3.3060 -6.2673 7.1578 21 7 -2.6486 -5.6647 8.1244 22 14 -5.1263 -6.6373 7.3556 23 1 -5.3473 -8.1024 7.2565 24 1 -5.5881 -6.1551 8.6820 25 1 -5.8907 -5.9478 6.2852 26 6 -0.9332 -4.8034 5.8399 27 6 1.2248 -1.2335 2.1355 28 8 0.0123 -1.2146 2.1163 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6768 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6766 -1.7489 -1.2492 36 1 1.6767 -0.2074 -2.1392 37 1 3.1300 -0.7217 -1.2490 38 1 3.9904 -1.1864 0.6359 39 1 3.8554 0.0422 1.9291 40 1 4.2480 -1.8067 3.3324 41 1 3.6056 -2.9739 2.1289 42 1 1.8728 -3.9826 3.1133 43 1 0.7181 -5.6746 3.1613 44 1 1.4038 -6.1948 4.7301 45 1 -0.3623 -7.8045 4.4424 46 1 -1.4504 -6.5973 3.6788 47 1 -0.6724 -6.6972 7.7624 48 1 -3.1090 -5.4126 8.9401 49 1 -1.8517 -4.2763 5.5816 50 1 -0.5853 -4.4863 6.8230 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592038796.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:55 Heat of formation + Delta-G solvation = -125.962012 kcal Electronic energy + Delta-G solvation = -31248.237139 eV Core-core repulsion = 27081.698325 eV Total energy + Delta-G solvation = -4166.538814 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.06864 -40.99633 -39.14591 -37.78043 -37.12314 -36.09322 -34.65899 -34.21118 -31.80276 -30.50097 -29.58479 -28.64150 -28.21284 -27.80516 -26.63526 -24.34260 -23.26072 -22.23353 -21.45668 -21.15043 -19.62451 -19.30793 -18.92077 -17.86382 -17.68272 -17.21346 -16.75622 -16.55749 -16.20689 -16.16334 -15.49095 -15.33296 -14.96376 -14.81114 -14.76707 -14.70193 -14.53781 -14.28721 -13.95189 -13.80500 -13.52245 -13.36658 -13.24654 -13.02927 -12.87195 -12.83701 -12.80232 -12.62064 -12.54418 -12.34118 -12.32965 -12.24795 -12.11800 -11.99289 -11.87837 -11.34934 -11.19740 -11.14626 -10.65924 -10.31459 -9.98258 -9.63866 -9.40780 -8.28164 -6.43771 1.27284 1.40259 1.41940 1.49393 1.78482 1.95022 2.19737 2.36416 2.98383 3.01824 3.36856 3.49561 3.77776 3.83551 3.91419 3.97978 4.03182 4.07532 4.10402 4.15265 4.35748 4.48867 4.57442 4.61535 4.64050 4.68984 4.70603 4.79091 4.83833 4.93226 4.94996 4.97793 5.02427 5.05309 5.11090 5.18488 5.22275 5.26788 5.33557 5.39036 5.39312 5.47586 5.73513 5.75678 5.98930 6.09514 6.17831 6.62192 7.01295 7.21833 7.27040 7.34855 7.54343 8.77998 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019318 B = 0.002712 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.058224 B =10323.773087 C =10879.413466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.166 3.834 3 C -0.150 4.150 4 C -0.148 4.148 5 N -0.606 5.606 6 C 0.100 3.900 7 C -0.118 4.118 8 C 0.125 3.875 9 H 0.100 0.900 10 N -0.711 5.711 11 C 0.713 3.287 12 O -0.639 6.639 13 N -0.635 5.635 14 C 0.108 3.892 15 C -0.111 4.111 16 C 0.236 3.764 17 O -0.585 6.585 18 C -0.560 4.560 19 H 0.066 0.934 20 C 0.024 3.976 21 N -0.916 5.916 22 Si 0.964 3.036 23 H -0.264 1.264 24 H -0.283 1.283 25 H -0.277 1.277 26 C 0.142 3.858 27 C 0.489 3.511 28 O -0.563 6.563 29 H 0.034 0.966 30 H 0.078 0.922 31 H 0.037 0.963 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.040 0.960 35 H 0.045 0.955 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.116 0.884 39 H 0.093 0.907 40 H 0.126 0.874 41 H 0.109 0.891 42 H 0.413 0.587 43 H 0.097 0.903 44 H 0.080 0.920 45 H 0.095 0.905 46 H 0.077 0.923 47 H 0.377 0.623 48 H 0.271 0.729 49 H 0.021 0.979 50 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.470 8.624 -19.684 28.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.083 3.917 3 C -0.208 4.208 4 C -0.206 4.206 5 N -0.341 5.341 6 C -0.021 4.021 7 C -0.156 4.156 8 C 0.016 3.984 9 H 0.118 0.882 10 N -0.369 5.369 11 C 0.415 3.585 12 O -0.520 6.520 13 N -0.372 5.372 14 C -0.013 4.013 15 C -0.149 4.149 16 C 0.195 3.805 17 O -0.393 6.393 18 C -0.598 4.598 19 H 0.085 0.915 20 C -0.177 4.177 21 N -0.555 5.555 22 Si 0.789 3.211 23 H -0.189 1.189 24 H -0.208 1.208 25 H -0.202 1.202 26 C 0.018 3.982 27 C 0.274 3.726 28 O -0.441 6.441 29 H 0.053 0.947 30 H 0.096 0.904 31 H 0.057 0.943 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.134 0.866 39 H 0.111 0.889 40 H 0.145 0.855 41 H 0.128 0.872 42 H 0.251 0.749 43 H 0.115 0.885 44 H 0.098 0.902 45 H 0.114 0.886 46 H 0.095 0.905 47 H 0.227 0.773 48 H 0.080 0.920 49 H 0.039 0.961 50 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 18.822 9.244 -19.714 28.781 hybrid contribution -1.965 0.094 1.242 2.327 sum 16.857 9.339 -18.472 26.694 Atomic orbital electron populations 1.22007 0.94766 1.01445 1.01253 1.20658 0.93526 0.93175 0.84338 1.22143 1.02735 0.93410 1.02524 1.22118 1.02778 0.99951 0.95756 1.48545 1.08362 1.55559 1.21675 1.22413 0.80330 0.99461 0.99918 1.23041 0.92464 1.01384 0.98688 1.21649 0.94994 0.84816 0.96975 0.88207 1.44621 1.42004 1.09307 1.40927 1.15726 0.80035 0.82110 0.80611 1.90853 1.64636 1.37900 1.58611 1.47850 1.42014 1.05327 1.41989 1.22445 0.98008 0.82395 0.98484 1.22750 0.96916 0.99893 0.95298 1.19654 0.89427 0.85181 0.86204 1.86064 1.63846 1.70302 1.19097 1.21831 0.95177 1.40008 1.02784 0.91544 1.25842 1.03021 0.93402 0.95410 1.69744 1.38406 1.40337 1.07024 0.85521 0.79453 0.78956 0.77200 1.18859 1.20786 1.20219 1.22354 0.87305 0.99943 0.88644 1.21776 0.87585 0.78754 0.84472 1.90744 1.15447 1.59965 1.77920 0.94702 0.90374 0.94347 0.89771 0.89838 0.94078 0.93578 0.89926 0.89661 0.86641 0.88883 0.85547 0.87217 0.74881 0.88501 0.90229 0.88634 0.90455 0.77345 0.92011 0.96075 0.95326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.36 7.00 71.98 0.50 -2.86 16 2 C 0.17 2.78 1.20 3.60 0.00 2.78 16 3 C -0.15 -1.79 8.54 71.98 0.61 -1.18 16 4 C -0.15 -1.60 8.49 71.98 0.61 -0.99 16 5 N -0.61 -11.41 2.76 -770.65 -2.13 -13.53 16 6 C 0.10 0.85 6.60 86.90 0.57 1.43 16 7 C -0.12 -1.19 6.89 31.72 0.22 -0.97 16 8 C 0.13 3.15 3.25 44.99 0.15 3.30 16 9 H 0.10 2.97 7.61 -2.39 -0.02 2.95 16 10 N -0.71 -21.30 5.10 -457.84 -2.33 -23.63 16 11 C 0.71 31.19 8.49 179.06 1.52 32.71 16 12 O -0.64 -34.64 16.35 -3.99 -0.07 -34.71 16 13 N -0.64 -27.90 3.33 -829.34 -2.76 -30.66 16 14 C 0.11 3.64 6.57 86.93 0.57 4.21 16 15 C -0.11 -4.37 6.25 32.06 0.20 -4.17 16 16 C 0.24 11.89 0.85 -10.35 -0.01 11.89 16 17 O -0.58 -30.19 13.08 -148.98 -1.95 -32.14 16 18 C -0.56 -30.66 8.11 25.60 0.21 -30.46 16 19 H 0.07 3.53 7.77 -2.91 -0.02 3.51 16 20 C 0.02 1.32 5.28 84.66 0.45 1.77 16 21 N -0.92 -51.88 10.96 21.45 0.24 -51.64 16 22 Si 0.96 43.92 29.54 68.60 2.03 45.94 16 23 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 24 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 25 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 26 C 0.14 7.56 5.38 86.73 0.47 8.03 16 27 C 0.49 14.60 7.48 87.90 0.66 15.26 16 28 O -0.56 -23.71 13.99 -3.02 -0.04 -23.75 16 29 H 0.03 1.08 7.06 -2.39 -0.02 1.06 16 30 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.04 1.16 7.08 -2.39 -0.02 1.14 16 32 H 0.08 0.60 7.90 -2.39 -0.02 0.58 16 33 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.08 0.49 7.21 -2.39 -0.02 0.48 16 38 H 0.12 0.29 7.12 -2.39 -0.02 0.28 16 39 H 0.09 0.52 8.14 -2.38 -0.02 0.50 16 40 H 0.13 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.11 0.71 7.81 -2.39 -0.02 0.69 16 42 H 0.41 9.19 6.88 -92.71 -0.64 8.55 16 43 H 0.10 2.44 7.30 -2.39 -0.02 2.43 16 44 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 45 H 0.10 3.39 8.14 -2.38 -0.02 3.37 16 46 H 0.08 3.01 8.03 -2.39 -0.02 2.99 16 47 H 0.38 20.45 7.23 -74.06 -0.54 19.91 16 48 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 49 H 0.02 1.27 7.81 -2.39 -0.02 1.25 16 50 H 0.03 1.67 8.00 -2.39 -0.02 1.65 16 Total: -1.00 -85.00 393.19 -0.50 -85.50 By element: Atomic # 1 Polarization: 38.08 SS G_CDS: -0.22 Total: 37.86 kcal Atomic # 6 Polarization: 34.03 SS G_CDS: 6.73 Total: 40.76 kcal Atomic # 7 Polarization: -112.48 SS G_CDS: -6.99 Total: -119.47 kcal Atomic # 8 Polarization: -88.55 SS G_CDS: -2.06 Total: -90.61 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.94 kcal Total: -85.00 -0.50 -85.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592038796.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.459 kcal (2) G-P(sol) polarization free energy of solvation -85.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds