Wall clock time and date at job start Sat Apr 11 2020 05:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47132 * 2 1 4 4 H 1.09001 * 109.67530 * 298.41367 * 3 2 1 5 5 C 1.53288 * 109.68859 * 58.97339 * 3 2 1 6 6 O 1.42954 * 109.22766 * 172.02770 * 5 3 2 7 7 C 1.42971 * 114.16419 * 297.42118 * 6 5 3 8 8 C 1.52878 * 109.29800 * 62.44978 * 7 6 5 9 9 N 1.47152 * 108.60607 * 307.93341 * 8 7 6 10 10 C 1.34773 * 120.98339 * 230.50520 * 9 8 7 11 11 O 1.21353 * 120.00283 * 186.90876 * 10 9 8 12 12 C 1.49456 * 119.99852 * 6.90035 * 10 9 8 13 13 O 1.21347 * 119.99891 * 7.19147 * 12 10 9 14 14 N 1.34774 * 119.99628 * 187.18778 * 12 10 9 15 15 C 1.47089 * 120.87656 * 177.31780 * 14 12 10 16 16 C 1.53241 * 108.67889 * 231.06519 * 15 14 12 17 17 N 1.46948 * 109.31164 * 306.46902 * 16 15 14 18 18 C 1.46909 * 110.96891 * 187.06705 * 17 16 15 19 19 C 1.50696 * 109.47028 * 65.49167 * 18 17 16 20 20 H 1.07993 * 120.00075 * 0.02562 * 19 18 17 21 21 C 1.37876 * 119.99905 * 179.97438 * 19 18 17 22 22 N 1.31517 * 119.99811 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00090 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.46976 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.46753 * 120.00493 * 23 21 19 26 26 H 1.48500 * 109.47330 * 240.00057 * 23 21 19 27 27 C 1.46901 * 111.44421 * 62.81512 * 17 16 15 28 28 C 1.47082 * 120.88612 * 357.29434 * 14 12 10 29 29 H 1.08999 * 109.47606 * 304.84802 * 1 2 3 30 30 H 1.09000 * 109.46833 * 64.84565 * 1 2 3 31 31 H 1.08995 * 109.47201 * 184.84571 * 1 2 3 32 32 H 1.09000 * 109.47237 * 239.98949 * 2 1 3 33 33 H 1.09010 * 109.46586 * 119.99318 * 2 1 3 34 34 H 1.08998 * 109.51371 * 291.95559 * 5 3 2 35 35 H 1.09008 * 109.51248 * 52.04942 * 5 3 2 36 36 H 1.09002 * 109.50967 * 182.50030 * 7 6 5 37 37 H 1.08993 * 109.50998 * 302.65452 * 7 6 5 38 38 H 1.08995 * 109.61521 * 188.11684 * 8 7 6 39 39 H 1.09000 * 109.52677 * 67.69317 * 8 7 6 40 40 H 1.08991 * 109.62783 * 350.87322 * 15 14 12 41 41 H 1.09000 * 109.62613 * 111.26084 * 15 14 12 42 42 H 1.09000 * 109.49457 * 66.23172 * 16 15 14 43 43 H 1.09005 * 109.48969 * 186.30667 * 16 15 14 44 44 H 1.09000 * 109.47143 * 185.49739 * 18 17 16 45 45 H 1.09002 * 109.46714 * 305.49650 * 18 17 16 46 46 H 0.97007 * 119.99905 * 179.97438 * 22 21 19 47 47 H 1.08999 * 109.49092 * 177.02017 * 27 17 16 48 48 H 1.09001 * 109.49321 * 56.93948 * 27 17 16 49 49 H 1.08998 * 109.62474 * 248.54711 * 28 14 12 50 50 H 1.08996 * 109.62754 * 8.93603 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.7019 1.9513 -0.9027 5 6 1.5108 2.1774 1.2368 6 8 2.1379 3.4588 1.3272 7 6 3.5559 3.4055 1.5015 8 6 4.1897 2.7327 0.2838 9 7 3.5107 1.4482 0.0506 10 6 4.2147 0.3097 -0.1062 11 8 3.6476 -0.7158 -0.4215 12 6 5.6938 0.3102 0.1079 13 8 6.2427 1.2988 0.5483 14 7 6.4179 -0.7873 -0.1879 15 6 7.8813 -0.7887 -0.0402 16 6 8.5058 -1.2958 -1.3444 17 7 7.9117 -2.5932 -1.6954 18 6 8.6001 -3.1926 -2.8465 19 6 10.0194 -3.5260 -2.4651 20 1 10.3744 -3.3143 -1.4674 21 6 10.8644 -4.1023 -3.3897 22 7 10.4319 -4.3605 -4.6046 23 14 12.6235 -4.5162 -2.9168 24 1 12.8598 -4.1299 -1.5026 25 1 12.8482 -5.9756 -3.0751 26 1 13.5607 -3.7729 -3.7968 27 6 6.4697 -2.4726 -1.9488 28 6 5.7657 -2.0157 -0.6666 29 1 -0.3634 0.5872 0.8433 30 1 -0.3633 0.4368 -0.9302 31 1 -0.3633 -1.0239 0.0868 32 1 1.8934 -0.5140 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 0.4318 2.3053 1.1503 35 1 1.7379 1.5961 2.1306 36 1 3.9483 4.4171 1.6054 37 1 3.7913 2.8292 2.3962 38 1 5.2492 2.5590 0.4718 39 1 4.0716 3.3741 -0.5895 40 1 8.2297 0.2239 0.1631 41 1 8.1657 -1.4457 0.7817 42 1 8.3099 -0.5810 -2.1436 43 1 9.5820 -1.4087 -1.2126 44 1 8.0811 -4.1028 -3.1467 45 1 8.6033 -2.4857 -3.6762 46 1 11.0265 -4.7657 -5.2552 47 1 6.0724 -3.4397 -2.2569 48 1 6.2991 -1.7406 -2.7381 49 1 5.8470 -2.7932 0.0929 50 1 4.7146 -1.8151 -0.8743 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601434148.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:13 Heat of formation + Delta-G solvation = -69.744950 kcal Electronic energy + Delta-G solvation = -31243.592640 eV Core-core repulsion = 27079.491581 eV Total energy + Delta-G solvation = -4164.101059 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.55466 -40.78303 -39.42055 -39.18181 -36.63738 -35.85654 -35.02021 -34.36664 -32.22965 -30.92594 -30.26947 -28.85102 -27.48650 -26.50532 -25.34399 -24.50874 -23.72941 -22.99059 -22.60274 -21.28075 -20.28886 -18.61292 -18.32638 -18.23209 -17.70162 -17.45913 -17.09307 -16.65331 -16.31272 -16.21270 -16.12496 -15.95798 -15.91837 -15.48825 -15.40978 -15.07665 -14.77068 -14.53655 -14.32805 -14.13861 -13.87720 -13.69538 -13.45383 -13.15319 -12.91569 -12.86312 -12.73984 -12.63413 -12.47348 -12.37331 -12.23172 -12.20105 -11.83015 -11.77528 -11.62748 -11.37010 -11.31566 -11.07241 -10.64247 -9.99853 -9.74678 -9.64640 -9.09919 -8.21891 -6.32211 0.16062 1.04830 1.41558 1.42462 1.55767 1.95142 2.10537 2.39908 2.81020 2.88878 3.10480 3.21871 3.61886 3.77284 3.89900 3.94536 3.99319 3.99914 4.12345 4.18571 4.22637 4.30590 4.38483 4.39827 4.48896 4.55433 4.60622 4.71765 4.73777 4.78272 4.83167 4.85191 4.89059 4.91655 4.98468 5.11666 5.19083 5.20832 5.24176 5.30175 5.37952 5.55473 5.62382 5.82679 6.00507 6.04850 6.12167 6.24534 6.52607 6.54502 6.77309 6.83729 7.37854 8.89614 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.024291 B = 0.002462 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.395669 B =11368.910894 C =12183.297734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C 0.106 3.894 4 H 0.091 0.909 5 C 0.053 3.947 6 O -0.393 6.393 7 C 0.053 3.947 8 C 0.015 3.985 9 N -0.578 5.578 10 C 0.515 3.485 11 O -0.508 6.508 12 C 0.503 3.497 13 O -0.531 6.531 14 N -0.571 5.571 15 C 0.120 3.880 16 C 0.056 3.944 17 N -0.542 5.542 18 C 0.208 3.792 19 C -0.522 4.522 20 H 0.068 0.932 21 C 0.001 3.999 22 N -0.936 5.936 23 Si 0.970 3.030 24 H -0.260 1.260 25 H -0.280 1.280 26 H -0.280 1.280 27 C 0.043 3.957 28 C 0.071 3.929 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.085 0.915 33 H 0.056 0.944 34 H 0.131 0.869 35 H 0.056 0.944 36 H 0.128 0.872 37 H 0.054 0.946 38 H 0.155 0.845 39 H 0.080 0.920 40 H 0.104 0.896 41 H 0.089 0.911 42 H 0.013 0.987 43 H 0.087 0.913 44 H 0.007 0.993 45 H -0.041 1.041 46 H 0.264 0.736 47 H 0.084 0.916 48 H 0.015 0.985 49 H 0.080 0.920 50 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.287 14.627 13.104 27.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.156 4.156 3 C 0.004 3.996 4 H 0.109 0.891 5 C -0.024 4.024 6 O -0.312 6.312 7 C -0.024 4.024 8 C -0.106 4.106 9 N -0.311 5.311 10 C 0.299 3.701 11 O -0.386 6.386 12 C 0.287 3.713 13 O -0.412 6.412 14 N -0.302 5.302 15 C -0.001 4.001 16 C -0.073 4.073 17 N -0.267 5.267 18 C 0.082 3.918 19 C -0.560 4.560 20 H 0.086 0.914 21 C -0.197 4.197 22 N -0.576 5.576 23 Si 0.795 3.205 24 H -0.184 1.184 25 H -0.205 1.205 26 H -0.206 1.206 27 C -0.086 4.086 28 C -0.050 4.050 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.103 0.897 33 H 0.074 0.926 34 H 0.149 0.851 35 H 0.075 0.925 36 H 0.146 0.854 37 H 0.072 0.928 38 H 0.171 0.829 39 H 0.098 0.902 40 H 0.122 0.878 41 H 0.107 0.893 42 H 0.031 0.969 43 H 0.106 0.894 44 H 0.025 0.975 45 H -0.024 1.024 46 H 0.073 0.927 47 H 0.102 0.898 48 H 0.033 0.967 49 H 0.098 0.902 50 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -19.293 14.397 13.398 27.550 hybrid contribution 1.241 -0.285 -1.247 1.782 sum -18.052 14.111 12.151 25.935 Atomic orbital electron populations 1.21904 0.93941 1.02692 1.02620 1.21990 0.96459 0.93027 1.04152 1.22387 0.77301 0.99286 1.00604 0.89065 1.23234 0.99407 0.84104 0.95630 1.87956 1.20793 1.28699 1.93704 1.22969 0.80399 1.03131 0.95855 1.23857 1.03651 0.83073 1.00011 1.48164 1.07438 1.07450 1.68000 1.19974 0.87589 0.84131 0.78437 1.90363 1.69184 1.31875 1.47226 1.20334 0.88491 0.83109 0.79328 1.90287 1.72133 1.31952 1.46781 1.48263 1.08119 1.12658 1.61184 1.21914 0.77568 1.03145 0.97522 1.22302 1.00403 0.89135 0.95454 1.62021 1.02305 1.22849 1.39487 1.19379 0.93845 0.92318 0.86231 1.21485 0.96254 1.39972 0.98283 0.91405 1.25935 1.03539 0.95533 0.94727 1.70100 1.37843 1.44383 1.05299 0.85314 0.78645 0.77789 0.78751 1.18400 1.20549 1.20592 1.22480 0.88985 1.00575 0.96563 1.23385 1.01570 0.84900 0.95107 0.91349 0.91959 0.92037 0.89700 0.92550 0.85093 0.92536 0.85414 0.92760 0.82932 0.90157 0.87823 0.89322 0.96918 0.89433 0.97471 1.02355 0.92698 0.89810 0.96667 0.90176 0.82228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.68 71.98 0.70 -1.05 16 2 C -0.12 -1.99 3.94 30.59 0.12 -1.87 16 3 C 0.11 1.74 3.22 44.96 0.14 1.89 16 4 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 5 C 0.05 0.73 5.65 72.08 0.41 1.14 16 6 O -0.39 -6.62 10.74 -148.98 -1.60 -8.22 16 7 C 0.05 0.81 6.97 71.94 0.50 1.31 16 8 C 0.01 0.27 6.47 86.21 0.56 0.83 16 9 N -0.58 -11.82 3.03 -795.89 -2.41 -14.23 16 10 C 0.51 12.67 7.48 87.27 0.65 13.32 16 11 O -0.51 -13.04 8.86 -3.26 -0.03 -13.07 16 12 C 0.50 13.81 7.66 87.27 0.67 14.48 16 13 O -0.53 -14.94 12.60 -3.24 -0.04 -14.98 16 14 N -0.57 -16.76 3.01 -819.50 -2.47 -19.23 16 15 C 0.12 3.64 6.58 86.35 0.57 4.21 16 16 C 0.06 2.13 5.46 86.37 0.47 2.60 16 17 N -0.54 -23.13 4.62 -899.66 -4.15 -27.28 16 18 C 0.21 11.06 4.73 85.55 0.40 11.47 16 19 C -0.52 -29.04 8.41 25.60 0.22 -28.83 16 20 H 0.07 3.66 7.12 -2.91 -0.02 3.63 16 21 C 0.00 0.04 5.46 84.65 0.46 0.50 16 22 N -0.94 -56.15 13.29 21.45 0.28 -55.87 16 23 Si 0.97 43.72 29.54 68.60 2.03 45.75 16 24 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 25 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 26 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 27 C 0.04 1.55 5.62 86.38 0.49 2.03 16 28 C 0.07 2.09 6.38 86.35 0.55 2.64 16 29 H 0.07 0.57 6.36 -2.39 -0.02 0.55 16 30 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.08 1.80 6.06 -2.39 -0.01 1.79 16 33 H 0.06 1.08 7.50 -2.38 -0.02 1.07 16 34 H 0.13 1.19 6.79 -2.39 -0.02 1.17 16 35 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 36 H 0.13 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.15 3.29 3.85 -73.47 -0.28 3.00 16 39 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.10 2.89 7.08 -2.39 -0.02 2.87 16 41 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 42 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 43 H 0.09 3.53 6.67 -2.38 -0.02 3.51 16 44 H 0.01 0.41 7.97 -2.39 -0.02 0.39 16 45 H -0.04 -2.41 8.13 -2.39 -0.02 -2.43 16 46 H 0.26 14.87 8.31 -92.70 -0.77 14.10 16 47 H 0.08 2.97 7.99 -2.39 -0.02 2.95 16 48 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 49 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 50 H 0.16 4.47 3.88 -76.69 -0.30 4.17 16 Total: -1.00 -65.44 377.96 -1.10 -66.53 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: 0.38 Total: 15.94 kcal Atomic # 6 Polarization: 17.75 SS G_CDS: 6.91 Total: 24.65 kcal Atomic # 7 Polarization: -107.87 SS G_CDS: -8.74 Total: -116.61 kcal Atomic # 8 Polarization: -34.59 SS G_CDS: -1.67 Total: -36.26 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -65.44 -1.10 -66.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601434148.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.211 kcal (2) G-P(sol) polarization free energy of solvation -65.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds