Wall clock time and date at job start Sat Apr 11 2020 05:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46952 * 2 1 4 4 C 1.52995 * 109.47245 * 240.00020 * 2 1 3 5 5 O 1.45194 * 109.47424 * 119.99907 * 2 1 3 6 6 C 1.34634 * 117.00334 * 60.00065 * 5 2 1 7 7 O 1.21521 * 119.99746 * 0.02562 * 6 5 2 8 8 N 1.34770 * 120.00631 * 180.02562 * 6 5 2 9 9 C 1.48270 * 125.47763 * 1.15412 * 8 6 5 10 10 C 1.54116 * 106.99821 * 182.32320 * 9 8 6 11 11 H 1.09006 * 113.41986 * 142.95813 * 10 9 8 12 12 C 1.54120 * 108.60307 * 270.03294 * 10 9 8 13 13 N 1.46962 * 107.76435 * 129.43991 * 12 10 9 14 14 C 1.34772 * 125.68881 * 182.63387 * 13 12 10 15 15 O 1.21583 * 119.99720 * 359.97438 * 14 13 12 16 16 N 1.34780 * 120.00305 * 179.97438 * 14 13 12 17 17 C 1.46491 * 120.00091 * 179.97438 * 16 14 13 18 18 C 1.50702 * 109.46957 * 179.97438 * 17 16 14 19 19 H 1.08002 * 120.00299 * 0.02562 * 18 17 16 20 20 C 1.37884 * 119.99942 * 179.72213 * 18 17 16 21 21 N 1.31514 * 119.99698 * 0.28408 * 20 18 17 22 22 Si 1.86794 * 119.99837 * 180.27476 * 20 18 17 23 23 H 1.48504 * 109.47196 * 60.00645 * 22 20 18 24 24 H 1.48504 * 109.46887 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47679 * 300.00280 * 22 20 18 26 26 C 1.47295 * 108.62530 * 2.89464 * 13 12 10 27 27 C 1.54688 * 105.20064 * 335.02345 * 26 13 12 28 28 H 1.09000 * 113.78973 * 159.62559 * 27 26 13 29 29 C 1.47300 * 125.61997 * 180.02562 * 8 6 5 30 30 H 1.09001 * 109.47388 * 299.99471 * 1 2 3 31 31 H 1.08999 * 109.47282 * 60.00261 * 1 2 3 32 32 H 1.09006 * 109.46942 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47137 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.46914 * 299.99964 * 3 2 1 35 35 H 1.09002 * 109.47165 * 60.00112 * 3 2 1 36 36 H 1.08997 * 109.47276 * 299.99825 * 4 2 1 37 37 H 1.09003 * 109.47098 * 60.00175 * 4 2 1 38 38 H 1.09007 * 109.47405 * 179.97438 * 4 2 1 39 39 H 1.08996 * 111.63100 * 62.16189 * 9 8 6 40 40 H 1.09000 * 108.67543 * 300.84094 * 9 8 6 41 41 H 1.08999 * 109.80438 * 9.87653 * 12 10 9 42 42 H 1.08999 * 109.80752 * 249.00694 * 12 10 9 43 43 H 0.97003 * 119.99349 * 359.97438 * 16 14 13 44 44 H 1.09004 * 109.47166 * 60.00164 * 17 16 14 45 45 H 1.08994 * 109.47507 * 299.99870 * 17 16 14 46 46 H 0.97005 * 119.99651 * 179.97438 * 21 20 18 47 47 H 1.08995 * 110.28040 * 94.08043 * 26 13 12 48 48 H 1.09008 * 110.27743 * 216.16125 * 26 13 12 49 49 H 1.09003 * 110.27649 * 37.11262 * 29 8 6 50 50 H 1.08999 * 110.27800 * 275.03076 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6844 1.1855 6 6 1.6524 -1.9722 1.3384 7 8 0.9517 -2.5097 0.5036 8 7 2.0673 -2.6653 2.4171 9 6 2.9016 -2.1260 3.5178 10 6 3.1707 -3.2901 4.4912 11 1 4.1716 -3.2716 4.9226 12 6 2.0487 -3.3173 5.5474 13 7 1.5263 -4.6894 5.6114 14 6 0.5017 -5.1055 6.3817 15 8 -0.0743 -4.3163 7.1054 16 7 0.1155 -6.3964 6.3500 17 6 -0.9979 -6.8487 7.1877 18 6 -1.2267 -8.3217 6.9667 19 1 -0.6047 -8.8666 6.2720 20 6 -2.2262 -8.9752 7.6561 21 7 -2.9834 -8.3118 8.5023 22 14 -2.5047 -10.8027 7.3878 23 1 -1.2728 -11.5494 7.7486 24 1 -3.6303 -11.2623 8.2406 25 1 -2.8330 -11.0493 5.9606 26 6 2.3133 -5.5355 4.6980 27 6 2.8795 -4.5661 3.6338 28 1 3.7472 -4.9557 3.1014 29 6 1.7476 -4.0737 2.7070 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1299 1.4426 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.6767 -1.7489 -1.2492 37 1 1.6767 -0.2073 -2.1392 38 1 3.1301 -0.7208 -1.2494 39 1 2.3981 -1.3143 4.0429 40 1 3.8427 -1.7689 3.0997 41 1 1.2521 -2.6321 5.2577 42 1 2.4493 -3.0291 6.5193 43 1 0.5748 -7.0259 5.7723 44 1 -1.8999 -6.2974 6.9220 45 1 -0.7592 -6.6710 8.2363 46 1 -3.6867 -8.7715 8.9870 47 1 3.1248 -6.0223 5.2388 48 1 1.6722 -6.2806 4.2266 49 1 1.7339 -4.6554 1.7853 50 1 0.7856 -4.1459 3.2145 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797520591.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:31 Heat of formation + Delta-G solvation = -97.177752 kcal Electronic energy + Delta-G solvation = -30418.029527 eV Core-core repulsion = 26252.738892 eV Total energy + Delta-G solvation = -4165.290635 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.24907 -40.34669 -38.56996 -37.06077 -35.23337 -34.19165 -34.14656 -32.37248 -31.15807 -30.79058 -27.71934 -27.64466 -27.41044 -26.67449 -25.46734 -23.07410 -22.19077 -21.58205 -20.26326 -19.71502 -19.36971 -18.36614 -17.75630 -16.85776 -16.76028 -16.17746 -15.91695 -15.38638 -15.32846 -14.89178 -14.61778 -14.51886 -14.21791 -13.83563 -13.74336 -13.42181 -13.19864 -12.97978 -12.83288 -12.74473 -12.57219 -12.39659 -12.30152 -12.18631 -12.14897 -11.94017 -11.69766 -11.65744 -11.53655 -11.33038 -11.20573 -11.00356 -10.95886 -10.86009 -10.61500 -10.29182 -10.22523 -9.44781 -9.37783 -8.98108 -8.72558 -8.44497 -7.74269 -6.14285 -4.21025 1.83655 2.65694 3.07802 3.26695 3.31695 3.33437 3.56558 3.84852 3.89336 4.19544 4.27285 4.34021 4.42309 4.46675 4.60839 4.77352 4.80074 4.87037 5.04162 5.07960 5.16063 5.19405 5.21691 5.24446 5.34129 5.38010 5.39368 5.45980 5.49052 5.57468 5.58984 5.63923 5.67602 5.80718 5.81548 5.88878 5.90823 6.01131 6.07919 6.24100 6.45820 7.16262 7.22974 7.50015 7.56403 7.57399 7.87016 8.02818 8.13621 8.75475 8.89259 9.31078 9.47761 10.95885 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017833 B = 0.002240 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.777089 B =12495.155305 C =12980.042127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.136 3.864 3 C -0.140 4.140 4 C -0.183 4.183 5 O -0.362 6.362 6 C 0.668 3.332 7 O -0.566 6.566 8 N -0.604 5.604 9 C 0.115 3.885 10 C -0.111 4.111 11 H 0.117 0.883 12 C 0.133 3.867 13 N -0.645 5.645 14 C 0.712 3.288 15 O -0.595 6.595 16 N -0.726 5.726 17 C 0.267 3.733 18 C -0.542 4.542 19 H 0.062 0.938 20 C 0.063 3.937 21 N -0.885 5.885 22 Si 0.904 3.096 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.275 1.275 26 C 0.112 3.888 27 C -0.109 4.109 28 H 0.115 0.885 29 C 0.132 3.868 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.088 0.912 37 H 0.069 0.931 38 H 0.058 0.942 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.386 0.614 44 H 0.025 0.975 45 H 0.025 0.975 46 H 0.266 0.734 47 H 0.074 0.926 48 H 0.079 0.921 49 H 0.085 0.915 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.031 15.760 -17.394 29.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.099 3.901 3 C -0.197 4.197 4 C -0.240 4.240 5 O -0.276 6.276 6 C 0.423 3.577 7 O -0.455 6.455 8 N -0.345 5.345 9 C -0.008 4.008 10 C -0.130 4.130 11 H 0.135 0.865 12 C 0.009 3.991 13 N -0.386 5.386 14 C 0.414 3.586 15 O -0.474 6.474 16 N -0.378 5.378 17 C 0.146 3.854 18 C -0.580 4.580 19 H 0.080 0.920 20 C -0.140 4.140 21 N -0.522 5.522 22 Si 0.732 3.268 23 H -0.201 1.201 24 H -0.211 1.211 25 H -0.201 1.201 26 C -0.013 4.013 27 C -0.128 4.128 28 H 0.133 0.867 29 C 0.011 3.989 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.107 0.893 33 H 0.085 0.915 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.106 0.894 37 H 0.088 0.912 38 H 0.077 0.923 39 H 0.098 0.902 40 H 0.092 0.908 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.219 0.781 44 H 0.043 0.957 45 H 0.043 0.957 46 H 0.076 0.924 47 H 0.092 0.908 48 H 0.098 0.902 49 H 0.103 0.897 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 16.040 16.226 -17.008 28.458 hybrid contribution -0.039 -1.232 -0.372 1.288 sum 16.001 14.994 -17.380 27.981 Atomic orbital electron populations 1.22523 0.93907 1.05207 1.02531 1.22076 0.94471 0.91483 0.82083 1.21853 1.02148 0.92525 1.03171 1.22514 1.01426 1.03568 0.96481 1.86300 1.71498 1.23440 1.46409 1.17466 0.78611 0.80409 0.81165 1.90919 1.41091 1.70450 1.43083 1.47400 1.54300 1.12365 1.20466 1.22235 0.95034 0.96202 0.87304 1.23278 1.00201 0.94295 0.95214 0.86525 1.21722 0.94770 0.84254 0.98368 1.47561 1.35179 1.09689 1.46183 1.15650 0.79106 0.83700 0.80159 1.90887 1.57606 1.54353 1.44505 1.45750 1.38090 1.06582 1.47386 1.18994 0.82803 0.93970 0.89619 1.21170 1.17642 0.93391 1.25842 0.92021 1.24946 0.95447 0.98875 0.94758 1.69972 1.19827 1.36458 1.25976 0.86468 0.77851 0.84283 0.78238 1.20090 1.21089 1.20075 1.22039 0.95732 0.93472 0.90020 1.23432 0.98496 0.95447 0.95473 0.86702 1.22118 0.98328 0.78907 0.99532 0.92080 0.91137 0.89336 0.91523 0.90141 0.91421 0.89369 0.91160 0.92253 0.90203 0.90772 0.91542 0.91496 0.78119 0.95737 0.95698 0.92402 0.90821 0.90229 0.89669 0.90262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.78 8.37 37.16 0.31 -1.47 16 2 C 0.14 1.25 1.13 -90.62 -0.10 1.15 16 3 C -0.14 -0.90 8.85 37.16 0.33 -0.57 16 4 C -0.18 -1.60 8.37 37.15 0.31 -1.29 16 5 O -0.36 -4.07 9.49 -40.31 -0.38 -4.45 16 6 C 0.67 8.56 7.93 54.05 0.43 8.99 16 7 O -0.57 -8.50 12.13 -19.29 -0.23 -8.74 16 8 N -0.60 -6.69 3.35 -175.86 -0.59 -7.28 16 9 C 0.11 0.95 6.27 -2.48 -0.02 0.94 16 10 C -0.11 -0.87 4.15 -87.59 -0.36 -1.23 16 11 H 0.12 0.64 8.14 -51.93 -0.42 0.22 16 12 C 0.13 1.61 5.88 -3.21 -0.02 1.59 16 13 N -0.64 -9.65 2.90 -176.66 -0.51 -10.16 16 14 C 0.71 14.92 8.49 -86.92 -0.74 14.19 16 15 O -0.59 -15.17 16.67 5.29 0.09 -15.08 16 16 N -0.73 -15.69 5.51 -66.42 -0.37 -16.06 16 17 C 0.27 7.20 5.43 -5.20 -0.03 7.17 16 18 C -0.54 -14.77 9.28 -34.44 -0.32 -15.09 16 19 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 20 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 21 N -0.89 -26.24 13.29 55.43 0.74 -25.50 16 22 Si 0.90 20.92 29.54 -169.99 -5.02 15.89 16 23 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 24 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 C 0.11 1.16 5.89 -2.72 -0.02 1.15 16 27 C -0.11 -0.88 4.34 -87.16 -0.38 -1.26 16 28 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 29 C 0.13 1.42 6.02 -2.89 -0.02 1.41 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.09 1.09 5.88 -51.93 -0.31 0.79 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.09 0.99 5.88 -51.93 -0.31 0.69 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 39 H 0.08 0.67 7.59 -51.93 -0.39 0.28 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.91 7.38 -51.93 -0.38 0.53 16 42 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.39 7.14 6.78 -40.82 -0.28 6.87 16 44 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.27 7.41 8.31 -40.82 -0.34 7.08 16 47 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.08 0.83 7.24 -51.92 -0.38 0.46 16 49 H 0.08 0.91 8.03 -51.93 -0.42 0.49 16 50 H 0.08 1.06 7.41 -51.93 -0.38 0.68 16 LS Contribution 396.12 15.07 5.97 5.97 Total: -1.00 -35.39 396.12 -9.32 -44.71 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -8.29 Total: 3.34 kcal Atomic # 6 Polarization: 18.07 SS G_CDS: -0.72 Total: 17.36 kcal Atomic # 7 Polarization: -58.27 SS G_CDS: -0.73 Total: -59.00 kcal Atomic # 8 Polarization: -27.74 SS G_CDS: -0.53 Total: -28.27 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.39 -9.32 -44.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797520591.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.469 kcal (2) G-P(sol) polarization free energy of solvation -35.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds