Wall clock time and date at job start Sat Apr 11 2020 05:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46952 * 2 1 4 4 C 1.52995 * 109.47245 * 240.00020 * 2 1 3 5 5 O 1.45194 * 109.47424 * 119.99907 * 2 1 3 6 6 C 1.34634 * 117.00334 * 60.00065 * 5 2 1 7 7 O 1.21521 * 119.99746 * 0.02562 * 6 5 2 8 8 N 1.34770 * 120.00631 * 180.02562 * 6 5 2 9 9 C 1.48270 * 125.47763 * 1.15412 * 8 6 5 10 10 C 1.54116 * 106.99821 * 182.32320 * 9 8 6 11 11 H 1.09006 * 113.41986 * 142.95813 * 10 9 8 12 12 C 1.54120 * 108.60307 * 270.03294 * 10 9 8 13 13 N 1.46962 * 107.76435 * 129.43991 * 12 10 9 14 14 C 1.34772 * 125.68881 * 182.63387 * 13 12 10 15 15 O 1.21583 * 119.99720 * 359.97438 * 14 13 12 16 16 N 1.34780 * 120.00305 * 179.97438 * 14 13 12 17 17 C 1.46491 * 120.00091 * 179.97438 * 16 14 13 18 18 C 1.50702 * 109.46957 * 179.97438 * 17 16 14 19 19 H 1.08002 * 120.00299 * 0.02562 * 18 17 16 20 20 C 1.37884 * 119.99942 * 179.72213 * 18 17 16 21 21 N 1.31514 * 119.99698 * 0.28408 * 20 18 17 22 22 Si 1.86794 * 119.99837 * 180.27476 * 20 18 17 23 23 H 1.48504 * 109.47196 * 60.00645 * 22 20 18 24 24 H 1.48504 * 109.46887 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47679 * 300.00280 * 22 20 18 26 26 C 1.47295 * 108.62530 * 2.89464 * 13 12 10 27 27 C 1.54688 * 105.20064 * 335.02345 * 26 13 12 28 28 H 1.09000 * 113.78973 * 159.62559 * 27 26 13 29 29 C 1.47300 * 125.61997 * 180.02562 * 8 6 5 30 30 H 1.09001 * 109.47388 * 299.99471 * 1 2 3 31 31 H 1.08999 * 109.47282 * 60.00261 * 1 2 3 32 32 H 1.09006 * 109.46942 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47137 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.46914 * 299.99964 * 3 2 1 35 35 H 1.09002 * 109.47165 * 60.00112 * 3 2 1 36 36 H 1.08997 * 109.47276 * 299.99825 * 4 2 1 37 37 H 1.09003 * 109.47098 * 60.00175 * 4 2 1 38 38 H 1.09007 * 109.47405 * 179.97438 * 4 2 1 39 39 H 1.08996 * 111.63100 * 62.16189 * 9 8 6 40 40 H 1.09000 * 108.67543 * 300.84094 * 9 8 6 41 41 H 1.08999 * 109.80438 * 9.87653 * 12 10 9 42 42 H 1.08999 * 109.80752 * 249.00694 * 12 10 9 43 43 H 0.97003 * 119.99349 * 359.97438 * 16 14 13 44 44 H 1.09004 * 109.47166 * 60.00164 * 17 16 14 45 45 H 1.08994 * 109.47507 * 299.99870 * 17 16 14 46 46 H 0.97005 * 119.99651 * 179.97438 * 21 20 18 47 47 H 1.08995 * 110.28040 * 94.08043 * 26 13 12 48 48 H 1.09008 * 110.27743 * 216.16125 * 26 13 12 49 49 H 1.09003 * 110.27649 * 37.11262 * 29 8 6 50 50 H 1.08999 * 110.27800 * 275.03076 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6844 1.1855 6 6 1.6524 -1.9722 1.3384 7 8 0.9517 -2.5097 0.5036 8 7 2.0673 -2.6653 2.4171 9 6 2.9016 -2.1260 3.5178 10 6 3.1707 -3.2901 4.4912 11 1 4.1716 -3.2716 4.9226 12 6 2.0487 -3.3173 5.5474 13 7 1.5263 -4.6894 5.6114 14 6 0.5017 -5.1055 6.3817 15 8 -0.0743 -4.3163 7.1054 16 7 0.1155 -6.3964 6.3500 17 6 -0.9979 -6.8487 7.1877 18 6 -1.2267 -8.3217 6.9667 19 1 -0.6047 -8.8666 6.2720 20 6 -2.2262 -8.9752 7.6561 21 7 -2.9834 -8.3118 8.5023 22 14 -2.5047 -10.8027 7.3878 23 1 -1.2728 -11.5494 7.7486 24 1 -3.6303 -11.2623 8.2406 25 1 -2.8330 -11.0493 5.9606 26 6 2.3133 -5.5355 4.6980 27 6 2.8795 -4.5661 3.6338 28 1 3.7472 -4.9557 3.1014 29 6 1.7476 -4.0737 2.7070 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1299 1.4426 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.6767 -1.7489 -1.2492 37 1 1.6767 -0.2073 -2.1392 38 1 3.1301 -0.7208 -1.2494 39 1 2.3981 -1.3143 4.0429 40 1 3.8427 -1.7689 3.0997 41 1 1.2521 -2.6321 5.2577 42 1 2.4493 -3.0291 6.5193 43 1 0.5748 -7.0259 5.7723 44 1 -1.8999 -6.2974 6.9220 45 1 -0.7592 -6.6710 8.2363 46 1 -3.6867 -8.7715 8.9870 47 1 3.1248 -6.0223 5.2388 48 1 1.6722 -6.2806 4.2266 49 1 1.7339 -4.6554 1.7853 50 1 0.7856 -4.1459 3.2145 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797520591.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:31 Heat of formation + Delta-G solvation = -122.208503 kcal Electronic energy + Delta-G solvation = -30419.114941 eV Core-core repulsion = 26252.738892 eV Total energy + Delta-G solvation = -4166.376049 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.17414 -41.40367 -39.97439 -38.02196 -36.35767 -36.15072 -34.97455 -34.34747 -32.28752 -31.65057 -29.30202 -28.38201 -28.29627 -27.61356 -26.69671 -24.63588 -23.58252 -22.43846 -21.11251 -21.03606 -20.47384 -19.66125 -18.84094 -18.05254 -17.70374 -17.59741 -17.23527 -16.97785 -16.45609 -16.16419 -16.05720 -15.46152 -15.10948 -14.95236 -14.81262 -14.63406 -14.46598 -14.10614 -14.00688 -13.77112 -13.60598 -13.45100 -13.35516 -13.21632 -13.04483 -12.91557 -12.90092 -12.86740 -12.67202 -12.47168 -12.30593 -12.24742 -12.08696 -11.95210 -11.78054 -11.50347 -11.40753 -11.26133 -11.13618 -10.79604 -10.08170 -9.85537 -9.40152 -8.28340 -6.45172 1.00990 1.43133 1.48155 1.55770 1.69762 1.71587 2.18924 2.38845 2.81254 3.06412 3.11140 3.24072 3.40913 3.55030 3.74571 3.79142 3.94081 4.01024 4.06088 4.24534 4.35570 4.42808 4.53422 4.60349 4.62916 4.64854 4.69405 4.73211 4.75430 4.80481 4.83747 4.87687 4.89884 5.00749 5.04558 5.06790 5.15823 5.17320 5.25157 5.26584 5.33451 5.39105 5.44059 5.48810 5.70714 5.84021 6.18299 6.34218 6.66002 7.16345 7.20833 7.24846 7.68062 8.83856 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017833 B = 0.002240 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.777089 B =12495.155305 C =12980.042127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.124 3.876 3 C -0.134 4.134 4 C -0.177 4.177 5 O -0.362 6.362 6 C 0.660 3.340 7 O -0.597 6.597 8 N -0.606 5.606 9 C 0.112 3.888 10 C -0.087 4.087 11 H 0.161 0.839 12 C 0.124 3.876 13 N -0.638 5.638 14 C 0.707 3.293 15 O -0.651 6.651 16 N -0.720 5.720 17 C 0.287 3.713 18 C -0.554 4.554 19 H 0.084 0.916 20 C 0.003 3.997 21 N -0.931 5.931 22 Si 0.987 3.013 23 H -0.259 1.259 24 H -0.286 1.286 25 H -0.263 1.263 26 C 0.102 3.898 27 C -0.086 4.086 28 H 0.159 0.841 29 C 0.128 3.872 30 H 0.056 0.944 31 H 0.092 0.908 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.102 0.898 35 H 0.066 0.934 36 H 0.058 0.942 37 H 0.090 0.910 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.103 0.897 41 H 0.041 0.959 42 H 0.068 0.932 43 H 0.404 0.596 44 H -0.019 1.019 45 H -0.014 1.014 46 H 0.269 0.731 47 H 0.104 0.896 48 H 0.079 0.921 49 H 0.084 0.916 50 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.498 15.136 -19.329 31.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.088 3.912 3 C -0.191 4.191 4 C -0.234 4.234 5 O -0.277 6.277 6 C 0.416 3.584 7 O -0.488 6.488 8 N -0.347 5.347 9 C -0.010 4.010 10 C -0.106 4.106 11 H 0.178 0.822 12 C 0.001 3.999 13 N -0.376 5.376 14 C 0.409 3.591 15 O -0.534 6.534 16 N -0.374 5.374 17 C 0.163 3.837 18 C -0.592 4.592 19 H 0.102 0.898 20 C -0.197 4.197 21 N -0.569 5.569 22 Si 0.810 3.190 23 H -0.184 1.184 24 H -0.211 1.211 25 H -0.188 1.188 26 C -0.020 4.020 27 C -0.105 4.105 28 H 0.177 0.823 29 C 0.007 3.993 30 H 0.075 0.925 31 H 0.111 0.889 32 H 0.075 0.925 33 H 0.093 0.907 34 H 0.120 0.880 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.109 0.891 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.121 0.879 41 H 0.060 0.940 42 H 0.086 0.914 43 H 0.239 0.761 44 H -0.001 1.001 45 H 0.004 0.996 46 H 0.078 0.922 47 H 0.122 0.878 48 H 0.097 0.903 49 H 0.103 0.897 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 19.604 15.620 -18.999 31.453 hybrid contribution -1.141 -0.906 0.192 1.470 sum 18.463 14.714 -18.807 30.185 Atomic orbital electron populations 1.22490 0.94707 1.03308 1.03429 1.22433 0.94097 0.92988 0.81707 1.21871 1.02674 0.90296 1.04214 1.22450 1.01854 1.01993 0.97116 1.86310 1.71399 1.22573 1.47413 1.17719 0.78444 0.80870 0.81371 1.90906 1.42378 1.71154 1.44370 1.47556 1.54148 1.12449 1.20580 1.22429 0.95657 0.96229 0.86651 1.23331 1.00171 0.93803 0.93277 0.82157 1.21995 0.95566 0.82141 1.00201 1.47483 1.33439 1.11787 1.44938 1.15815 0.80047 0.82848 0.80437 1.90836 1.59881 1.55556 1.47104 1.45303 1.37251 1.07564 1.47276 1.18400 0.82775 0.94212 0.88268 1.21546 1.18144 0.93258 1.26264 0.89753 1.26095 0.94870 1.04650 0.94073 1.70147 1.20608 1.38980 1.27203 0.85176 0.78120 0.77149 0.78565 1.18375 1.21144 1.18752 1.22441 0.95936 0.93580 0.90075 1.23462 0.98325 0.94656 0.94096 0.82309 1.22101 0.98070 0.79323 0.99852 0.92503 0.88914 0.92534 0.90654 0.87975 0.91512 0.92261 0.89147 0.91407 0.90731 0.87897 0.94046 0.91412 0.76054 1.00105 0.99586 0.92242 0.87836 0.90313 0.89733 0.93942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.53 8.37 71.98 0.60 -2.93 16 2 C 0.12 2.17 1.13 -10.80 -0.01 2.16 16 3 C -0.13 -1.41 8.85 71.98 0.64 -0.77 16 4 C -0.18 -2.91 8.37 71.98 0.60 -2.31 16 5 O -0.36 -7.92 9.49 -55.43 -0.53 -8.44 16 6 C 0.66 16.99 7.93 129.79 1.03 18.02 16 7 O -0.60 -18.66 12.13 19.77 0.24 -18.42 16 8 N -0.61 -12.91 3.35 -940.70 -3.15 -16.06 16 9 C 0.11 1.58 6.27 86.42 0.54 2.12 16 10 C -0.09 -1.06 4.15 -8.83 -0.04 -1.09 16 11 H 0.16 0.77 8.14 -2.38 -0.02 0.75 16 12 C 0.12 2.94 5.88 86.67 0.51 3.44 16 13 N -0.64 -18.96 2.90 -831.10 -2.41 -21.37 16 14 C 0.71 30.90 8.49 179.05 1.52 32.42 16 15 O -0.65 -35.42 16.67 -3.98 -0.07 -35.49 16 16 N -0.72 -32.20 5.51 -482.32 -2.66 -34.86 16 17 C 0.29 16.34 5.43 85.64 0.46 16.80 16 18 C -0.55 -30.64 9.28 25.60 0.24 -30.40 16 19 H 0.08 4.17 7.60 -2.91 -0.02 4.15 16 20 C 0.00 0.15 5.46 84.66 0.46 0.61 16 21 N -0.93 -57.06 13.29 21.45 0.28 -56.77 16 22 Si 0.99 42.66 29.54 68.60 2.03 44.69 16 23 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 24 H -0.29 -12.29 7.11 99.48 0.71 -11.58 16 25 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 26 C 0.10 1.86 5.89 86.80 0.51 2.38 16 27 C -0.09 -1.09 4.34 -8.55 -0.04 -1.13 16 28 H 0.16 0.87 8.14 -2.39 -0.02 0.85 16 29 C 0.13 2.67 6.02 86.69 0.52 3.19 16 30 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.06 1.48 5.88 -2.38 -0.01 1.47 16 33 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.06 1.35 5.88 -2.39 -0.01 1.34 16 37 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 39 H 0.07 1.17 7.59 -2.39 -0.02 1.15 16 40 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.04 1.19 7.38 -2.39 -0.02 1.17 16 42 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.40 14.87 6.78 -92.71 -0.63 14.25 16 44 H -0.02 -1.23 8.14 -2.38 -0.02 -1.25 16 45 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 46 H 0.27 15.39 8.31 -92.70 -0.77 14.62 16 47 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 48 H 0.08 1.50 7.24 -2.38 -0.02 1.48 16 49 H 0.08 1.76 8.03 -2.39 -0.02 1.74 16 50 H 0.04 1.19 7.41 -2.39 -0.02 1.17 16 Total: -1.00 -84.96 396.12 1.60 -83.35 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: 0.31 Total: 20.87 kcal Atomic # 6 Polarization: 34.96 SS G_CDS: 7.55 Total: 42.52 kcal Atomic # 7 Polarization: -121.13 SS G_CDS: -7.93 Total: -129.07 kcal Atomic # 8 Polarization: -62.00 SS G_CDS: -0.35 Total: -62.36 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Total: -84.96 1.60 -83.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797520591.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.855 kcal (2) G-P(sol) polarization free energy of solvation -84.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds