Wall clock time and date at job start Sat Apr 11 2020 05:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.46826 * 2 1 4 4 C 1.50702 * 109.47345 * 240.00070 * 2 1 3 5 5 H 1.07996 * 119.99500 * 240.00199 * 4 2 1 6 6 C 1.37879 * 119.99942 * 59.99966 * 4 2 1 7 7 N 1.31508 * 120.00200 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99790 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47051 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47395 * 119.99831 * 8 6 4 11 11 H 1.48504 * 109.46976 * 239.99945 * 8 6 4 12 12 C 1.52995 * 109.47333 * 119.99624 * 2 1 3 13 13 N 1.46503 * 109.47378 * 300.00434 * 12 2 1 14 14 C 1.34764 * 120.00417 * 179.97438 * 13 12 2 15 15 O 1.21590 * 120.00175 * 4.98023 * 14 13 12 16 16 N 1.34776 * 120.00231 * 184.98047 * 14 13 12 17 17 C 1.46931 * 120.62891 * 174.76934 * 16 14 13 18 18 C 1.53191 * 108.89076 * 126.46827 * 17 16 14 19 19 C 1.53048 * 109.31575 * 54.56216 * 18 17 16 20 20 N 1.46494 * 109.46306 * 178.61548 * 19 18 17 21 21 C 1.47092 * 125.55999 * 240.00205 * 20 19 18 22 22 C 1.54092 * 103.78028 * 179.97438 * 21 20 19 23 23 O 1.45708 * 104.00678 * 0.02562 * 22 21 20 24 24 C 1.33777 * 109.47418 * 359.75706 * 23 22 21 25 25 O 1.21512 * 123.07000 * 180.24832 * 24 23 22 26 26 C 1.53045 * 109.53494 * 298.63676 * 19 18 17 27 27 C 1.46952 * 120.65396 * 354.59495 * 16 14 13 28 28 H 1.09002 * 109.47345 * 300.00345 * 1 2 3 29 29 H 1.09008 * 109.47296 * 60.00329 * 1 2 3 30 30 H 1.08998 * 109.47285 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47019 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.47453 * 299.99299 * 3 2 1 33 33 H 1.08996 * 109.47301 * 60.00117 * 3 2 1 34 34 H 0.97005 * 120.00266 * 180.02562 * 7 6 4 35 35 H 1.09003 * 109.47621 * 180.02562 * 12 2 1 36 36 H 1.09004 * 109.47032 * 59.99621 * 12 2 1 37 37 H 0.97005 * 119.99756 * 359.97438 * 13 12 2 38 38 H 1.08996 * 109.58784 * 6.61402 * 17 16 14 39 39 H 1.08994 * 109.58645 * 246.32340 * 17 16 14 40 40 H 1.08995 * 109.50185 * 174.51421 * 18 17 16 41 41 H 1.08998 * 109.49901 * 294.61388 * 18 17 16 42 42 H 1.09002 * 109.45783 * 58.65540 * 19 18 17 43 43 H 1.09005 * 110.56246 * 298.54754 * 21 20 19 44 44 H 1.08995 * 110.56596 * 61.40273 * 21 20 19 45 45 H 1.09000 * 110.52262 * 118.62344 * 22 21 20 46 46 H 1.08990 * 110.52512 * 241.23201 * 22 21 20 47 47 H 1.08996 * 109.49338 * 181.31514 * 26 19 18 48 48 H 1.08994 * 109.49448 * 301.37619 * 26 19 18 49 49 H 1.09000 * 109.46861 * 113.74964 * 27 16 14 50 50 H 1.08998 * 109.71491 * 353.45631 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4828 7 7 0.9436 0.8302 -2.6035 8 14 2.3215 -1.1203 -4.0080 9 1 3.1466 -2.2870 -3.6037 10 1 1.1663 -1.5867 -4.8161 11 1 3.1467 -0.1873 -4.8165 12 6 2.0400 -0.7211 1.2492 13 7 1.5516 -0.0305 2.4454 14 6 1.8768 -0.4912 3.6695 15 8 2.6481 -1.4243 3.7828 16 7 1.3470 0.0824 4.7680 17 6 1.6008 -0.4790 6.1019 18 6 2.1501 0.6265 7.0090 19 6 1.1852 1.8145 7.0004 20 7 1.6909 2.8605 7.8927 21 6 0.9890 3.3929 9.0706 22 6 1.9596 4.4516 9.6288 23 8 3.0945 4.4057 8.7161 24 6 2.8704 3.4849 7.7718 25 8 3.6628 3.2392 6.8840 26 6 1.0693 2.3693 5.5787 27 6 0.5077 1.2834 4.6554 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1300 1.4426 -0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 0.7090 1.1614 -3.4845 35 1 3.1300 -0.7208 1.2495 36 1 1.6766 -1.7488 1.2493 37 1 0.9942 0.7583 2.3564 38 1 2.3301 -1.2855 6.0262 39 1 0.6707 -0.8652 6.5188 40 1 2.2503 0.2467 8.0257 41 1 3.1251 0.9472 6.6423 42 1 0.2037 1.4877 7.3438 43 1 0.0459 3.8546 8.7781 44 1 0.8194 2.6047 9.8040 45 1 1.4979 5.4389 9.6142 46 1 2.2692 4.1905 10.6407 47 1 0.4002 3.2297 5.5775 48 1 2.0544 2.6740 5.2257 49 1 -0.5128 1.0426 4.9531 50 1 0.5134 1.6407 3.6257 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852377366.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:42 Heat of formation + Delta-G solvation = -88.871770 kcal Electronic energy + Delta-G solvation = -30902.717600 eV Core-core repulsion = 26737.787140 eV Total energy + Delta-G solvation = -4164.930460 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.94419 -40.12436 -38.09428 -37.21731 -36.33273 -35.29280 -33.40213 -32.12420 -31.33654 -30.51255 -29.61881 -25.99941 -25.68471 -25.37686 -24.52739 -24.09397 -23.36827 -22.22214 -20.60967 -19.38564 -18.86302 -18.11525 -17.63074 -17.55597 -16.73054 -15.93520 -15.68031 -15.45169 -15.26078 -14.73414 -14.59847 -14.49327 -14.44246 -14.15106 -14.03513 -13.63299 -13.37529 -13.20901 -12.81873 -12.80190 -12.60127 -12.49639 -12.18293 -12.08845 -11.48382 -11.34634 -11.23045 -11.17428 -11.07755 -10.99948 -10.84452 -10.62185 -10.46181 -10.34549 -10.16562 -9.69994 -9.58934 -9.27687 -9.22993 -8.74266 -8.68104 -8.37346 -8.10004 -5.98718 -4.08173 2.04835 2.48066 2.94128 3.08786 3.30065 3.38545 3.43915 3.63858 3.68167 4.11258 4.13610 4.30796 4.45308 4.51358 4.63194 4.69618 4.74454 4.86957 4.96931 5.06112 5.08285 5.12265 5.28232 5.32926 5.46264 5.56087 5.60678 5.82144 5.97433 6.04008 6.22275 6.24700 6.41961 6.54559 6.61702 6.84321 6.86365 6.95880 7.04812 7.07845 7.14815 7.28152 7.43330 7.59907 7.73682 7.77853 8.05166 8.16289 8.41195 8.46740 8.91895 9.06952 9.57419 11.02841 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022878 B = 0.002340 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.581871 B =11964.894764 C =12361.149893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.056 3.944 3 C -0.130 4.130 4 C -0.503 4.503 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.893 3.107 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.149 3.851 13 N -0.733 5.733 14 C 0.704 3.296 15 O -0.596 6.596 16 N -0.636 5.636 17 C 0.137 3.863 18 C -0.152 4.152 19 C 0.184 3.816 20 N -0.630 5.630 21 C 0.065 3.935 22 C 0.041 3.959 23 O -0.331 6.331 24 C 0.640 3.360 25 O -0.509 6.509 26 C -0.152 4.152 27 C 0.119 3.881 28 H 0.004 0.996 29 H 0.085 0.915 30 H 0.027 0.973 31 H 0.027 0.973 32 H 0.085 0.915 33 H 0.004 0.996 34 H 0.259 0.741 35 H 0.053 0.947 36 H 0.052 0.948 37 H 0.393 0.607 38 H 0.099 0.901 39 H 0.063 0.937 40 H 0.075 0.925 41 H 0.087 0.913 42 H 0.096 0.904 43 H 0.092 0.908 44 H 0.091 0.909 45 H 0.105 0.895 46 H 0.105 0.895 47 H 0.077 0.923 48 H 0.088 0.912 49 H 0.069 0.931 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.949 7.549 26.652 28.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.055 3.945 3 C -0.187 4.187 4 C -0.541 4.541 5 H 0.077 0.923 6 C -0.136 4.136 7 N -0.526 5.526 8 Si 0.721 3.279 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.026 3.974 13 N -0.389 5.389 14 C 0.405 3.595 15 O -0.475 6.475 16 N -0.375 5.375 17 C 0.013 3.987 18 C -0.191 4.191 19 C 0.083 3.917 20 N -0.378 5.378 21 C -0.059 4.059 22 C -0.034 4.034 23 O -0.242 6.242 24 C 0.394 3.606 25 O -0.393 6.393 26 C -0.191 4.191 27 C -0.006 4.006 28 H 0.023 0.977 29 H 0.104 0.896 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.104 0.896 33 H 0.023 0.977 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.230 0.770 38 H 0.117 0.883 39 H 0.081 0.919 40 H 0.093 0.907 41 H 0.106 0.894 42 H 0.114 0.886 43 H 0.110 0.890 44 H 0.109 0.891 45 H 0.123 0.877 46 H 0.123 0.877 47 H 0.096 0.904 48 H 0.106 0.894 49 H 0.087 0.913 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.845 6.965 26.089 27.628 hybrid contribution -0.206 0.122 -0.656 0.698 sum -6.050 7.086 25.433 27.086 Atomic orbital electron populations 1.21816 0.97826 0.99134 0.99904 1.18367 0.92750 0.92792 0.90605 1.21819 0.98703 0.98330 0.99887 1.21028 1.31241 1.12028 0.89826 0.92336 1.24881 0.94912 0.94943 0.98850 1.69814 1.36875 1.22819 1.23049 0.86516 0.78607 0.79774 0.82991 1.19743 1.21110 1.21093 1.21599 0.98074 0.95286 0.82446 1.45668 1.55712 1.32888 1.04605 1.15945 0.80546 0.82353 0.80660 1.90869 1.39066 1.31934 1.85628 1.47266 1.54327 1.30067 1.05862 1.21289 1.01014 0.95793 0.80611 1.22406 1.01108 0.95122 1.00460 1.20898 0.97322 0.85084 0.88383 1.48297 1.18650 1.41069 1.29769 1.22812 0.97099 0.97351 0.88600 1.24260 0.84351 1.00899 0.93909 1.87310 1.42084 1.55349 1.39424 1.18560 0.82289 0.78100 0.81686 1.91093 1.49082 1.66314 1.32778 1.22385 1.04122 0.98489 0.94141 1.21509 0.93916 0.84748 1.00415 0.97696 0.89638 0.95431 0.95375 0.89629 0.97707 0.93117 0.92874 0.93003 0.77022 0.88300 0.91892 0.90654 0.89447 0.88561 0.88999 0.89067 0.87682 0.87713 0.90428 0.89361 0.91257 0.89627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 2 C 0.06 1.32 0.50 -155.66 -0.08 1.24 16 3 C -0.13 -3.02 8.08 37.16 0.30 -2.72 16 4 C -0.50 -13.40 8.01 -34.44 -0.28 -13.68 16 5 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 6 C 0.07 1.74 5.15 -17.82 -0.09 1.64 16 7 N -0.89 -23.89 9.35 55.43 0.52 -23.37 16 8 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 9 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 C 0.15 3.32 4.51 -4.04 -0.02 3.30 16 13 N -0.73 -13.92 4.87 -65.23 -0.32 -14.23 16 14 C 0.70 13.28 8.29 -86.93 -0.72 12.56 16 15 O -0.60 -13.48 15.77 5.29 0.08 -13.40 16 16 N -0.64 -8.93 2.98 -178.48 -0.53 -9.46 16 17 C 0.14 1.58 6.44 -3.71 -0.02 1.56 16 18 C -0.15 -1.55 5.36 -26.61 -0.14 -1.69 16 19 C 0.18 1.53 2.75 -67.89 -0.19 1.34 16 20 N -0.63 -5.12 2.85 -171.17 -0.49 -5.60 16 21 C 0.06 0.22 7.67 -3.15 -0.02 0.19 16 22 C 0.04 0.15 8.23 37.73 0.31 0.46 16 23 O -0.33 -3.33 11.09 -37.85 -0.42 -3.75 16 24 C 0.64 7.71 8.31 53.71 0.45 8.16 16 25 O -0.51 -8.54 15.10 -19.12 -0.29 -8.83 16 26 C -0.15 -1.52 5.36 -26.61 -0.14 -1.66 16 27 C 0.12 1.27 6.38 -3.69 -0.02 1.25 16 28 H 0.00 0.08 6.86 -51.93 -0.36 -0.27 16 29 H 0.08 2.14 6.07 -51.92 -0.32 1.83 16 30 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.09 2.18 6.07 -51.93 -0.32 1.86 16 33 H 0.00 0.08 6.86 -51.93 -0.36 -0.27 16 34 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 35 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.39 6.74 3.66 -40.82 -0.15 6.59 16 38 H 0.10 1.36 6.99 -51.93 -0.36 1.00 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.09 1.24 6.83 -51.93 -0.35 0.88 16 42 H 0.10 0.53 8.10 -51.93 -0.42 0.11 16 43 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 44 H 0.09 0.14 8.14 -51.93 -0.42 -0.29 16 45 H 0.11 0.17 8.14 -51.93 -0.42 -0.26 16 46 H 0.10 0.16 8.14 -51.93 -0.42 -0.27 16 47 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.09 1.21 6.87 -51.93 -0.36 0.86 16 49 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 50 H 0.09 0.99 5.66 -51.93 -0.29 0.69 16 LS Contribution 383.72 15.07 5.78 5.78 Total: -1.00 -34.74 383.72 -8.95 -43.69 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -7.90 Total: 3.84 kcal Atomic # 6 Polarization: 9.69 SS G_CDS: -0.37 Total: 9.32 kcal Atomic # 7 Polarization: -51.85 SS G_CDS: -0.82 Total: -52.67 kcal Atomic # 8 Polarization: -25.35 SS G_CDS: -0.63 Total: -25.98 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.74 -8.95 -43.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852377366.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.185 kcal (2) G-P(sol) polarization free energy of solvation -34.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds