Wall clock time and date at job start Sat Apr 11 2020 05:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.46980 * 2 1 4 4 C 1.52996 * 109.47572 * 240.00168 * 2 1 3 5 5 O 1.45201 * 109.47304 * 119.99911 * 2 1 3 6 6 C 1.34638 * 116.99929 * 60.00107 * 5 2 1 7 7 O 1.21509 * 119.99666 * 0.02562 * 6 5 2 8 8 N 1.34777 * 120.00196 * 180.02562 * 6 5 2 9 9 C 1.47149 * 120.68303 * 180.02562 * 8 6 5 10 10 C 1.53891 * 108.04063 * 132.61311 * 9 8 6 11 11 H 1.09007 * 112.12083 * 182.65653 * 10 9 8 12 12 C 1.54542 * 107.81171 * 306.64372 * 10 9 8 13 13 C 1.54260 * 104.93800 * 88.97264 * 12 10 9 14 14 C 1.54534 * 104.93991 * 359.97438 * 13 12 10 15 15 H 1.09001 * 112.20624 * 146.47244 * 14 13 12 16 16 C 1.47152 * 120.67975 * 359.71919 * 8 6 5 17 17 N 1.48729 * 107.18103 * 58.43865 * 10 9 8 18 18 C 1.46891 * 111.00747 * 167.47507 * 17 10 9 19 19 C 1.50696 * 109.47633 * 176.81511 * 18 17 10 20 20 O 1.21299 * 119.99631 * 6.20133 * 19 18 17 21 21 N 1.34773 * 120.00181 * 186.19943 * 19 18 17 22 22 C 1.37103 * 119.99931 * 180.02562 * 21 19 18 23 23 H 1.08000 * 119.99875 * 359.97438 * 22 21 19 24 24 C 1.38948 * 120.00066 * 180.02562 * 22 21 19 25 25 N 1.31416 * 119.99767 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 120.00040 * 180.02562 * 24 22 21 27 27 H 1.48493 * 109.47331 * 59.99915 * 26 24 22 28 28 H 1.48500 * 109.46731 * 179.97438 * 26 24 22 29 29 H 1.48498 * 109.46789 * 299.99298 * 26 24 22 30 30 H 1.08996 * 109.47278 * 299.99798 * 1 2 3 31 31 H 1.09002 * 109.47051 * 60.00495 * 1 2 3 32 32 H 1.09003 * 109.46946 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.47007 * 179.97438 * 3 2 1 34 34 H 1.08991 * 109.47276 * 299.99726 * 3 2 1 35 35 H 1.09002 * 109.47321 * 60.00166 * 3 2 1 36 36 H 1.09003 * 109.46765 * 299.99841 * 4 2 1 37 37 H 1.09002 * 109.47473 * 59.99596 * 4 2 1 38 38 H 1.09007 * 109.47291 * 180.02562 * 4 2 1 39 39 H 1.09001 * 109.74654 * 252.24327 * 9 8 6 40 40 H 1.09000 * 109.74928 * 12.92143 * 9 8 6 41 41 H 1.09002 * 110.35133 * 207.83690 * 12 10 9 42 42 H 1.08999 * 110.34636 * 329.99947 * 12 10 9 43 43 H 1.08999 * 110.34713 * 118.86635 * 13 12 10 44 44 H 1.09001 * 110.34570 * 241.13366 * 13 12 10 45 45 H 1.09000 * 109.75310 * 347.02444 * 16 8 6 46 46 H 1.09001 * 109.74815 * 107.74962 * 16 8 6 47 47 H 1.09006 * 109.47365 * 296.82302 * 18 17 10 48 48 H 1.09008 * 109.46979 * 56.81707 * 18 17 10 49 49 H 0.97000 * 120.00131 * 359.97438 * 21 19 18 50 50 H 0.97001 * 119.99393 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6523 -1.9723 1.3383 7 8 0.9517 -2.5096 0.5035 8 7 2.0672 -2.6654 2.4172 9 6 1.6813 -4.0737 2.5989 10 6 2.9449 -4.8702 2.9693 11 1 2.7421 -5.9360 3.0747 12 6 4.0168 -4.5832 1.8937 13 6 4.7694 -3.3374 2.4048 14 6 4.0858 -2.9805 3.7439 15 1 4.7872 -2.5624 4.4660 16 6 2.9211 -2.0313 3.4341 17 7 3.4977 -4.2648 4.2103 18 6 4.5252 -5.1295 4.8055 19 6 5.1158 -4.4495 6.0137 20 8 4.6446 -3.4055 6.4129 21 7 6.1675 -5.0013 6.6507 22 6 6.7045 -4.3829 7.7502 23 1 6.2850 -3.4534 8.1056 24 6 7.7892 -4.9515 8.4066 25 7 8.2999 -6.0824 7.9738 26 14 8.5204 -4.1093 9.9051 27 1 7.4836 -3.9908 10.9615 28 1 9.6593 -4.9126 10.4178 29 1 8.9993 -2.7554 9.5274 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9563 -0.8899 35 1 1.6766 1.9564 0.8900 36 1 1.6767 -1.7489 -1.2492 37 1 1.6767 -0.2074 -2.1392 38 1 3.1301 -0.7215 -1.2489 39 1 0.9472 -4.1539 3.4006 40 1 1.2585 -4.4623 1.6724 41 1 4.6996 -5.4282 1.8041 42 1 3.5443 -4.3753 0.9337 43 1 5.8219 -3.5702 2.5663 44 1 4.6666 -2.5154 1.6963 45 1 3.3087 -1.0867 3.0527 46 1 2.3434 -1.8537 4.3413 47 1 4.0747 -6.0759 5.1051 48 1 5.3110 -5.3168 4.0736 49 1 6.5441 -5.8364 6.3317 50 1 9.0569 -6.4795 8.4323 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852777077.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:45 Heat of formation + Delta-G solvation = -95.162746 kcal Electronic energy + Delta-G solvation = -31474.740989 eV Core-core repulsion = 27309.537732 eV Total energy + Delta-G solvation = -4165.203257 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.28187 -40.11521 -38.01404 -36.98539 -34.84540 -34.02839 -33.72861 -31.52195 -31.33744 -30.93946 -27.93906 -27.60203 -27.56270 -25.78922 -24.76642 -23.92039 -22.22699 -20.61569 -20.00476 -19.31371 -18.77137 -18.04903 -17.62071 -16.75746 -16.58877 -15.96765 -15.60046 -15.15016 -14.94798 -14.62223 -14.49672 -14.27138 -14.19609 -13.93640 -13.56387 -13.53061 -13.49059 -12.81153 -12.75826 -12.53992 -12.30086 -12.22608 -12.10351 -12.07655 -11.88912 -11.63412 -11.57203 -11.45619 -11.35519 -11.13312 -10.95477 -10.91534 -10.69675 -10.48662 -10.46021 -10.38514 -10.23612 -10.00708 -9.48947 -8.86499 -8.37873 -8.14027 -7.98076 -6.44127 -3.85061 2.11603 2.83164 3.18191 3.24383 3.28405 3.77313 3.87853 3.91213 4.19210 4.52921 4.57285 4.65866 4.71202 4.73430 4.91494 4.97962 5.15810 5.23203 5.23360 5.25767 5.31843 5.32939 5.43986 5.48216 5.50858 5.55798 5.59499 5.65456 5.66024 5.77570 5.81153 5.82970 5.89027 5.93403 5.98821 6.06501 6.09625 6.13384 6.19424 6.23222 6.30850 6.40715 6.52605 7.02504 7.16208 7.43021 7.52661 8.03327 8.32858 8.58524 9.15242 9.51588 10.02725 10.73437 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022234 B = 0.002543 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.032145 B =11006.787264 C =11588.784673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.136 3.864 3 C -0.141 4.141 4 C -0.182 4.182 5 O -0.362 6.362 6 C 0.654 3.346 7 O -0.578 6.578 8 N -0.586 5.586 9 C 0.144 3.856 10 C 0.044 3.956 11 H 0.107 0.893 12 C -0.145 4.145 13 C -0.149 4.149 14 C 0.054 3.946 15 H 0.127 0.873 16 C 0.129 3.871 17 N -0.477 5.477 18 C 0.035 3.965 19 C 0.443 3.557 20 O -0.579 6.579 21 N -0.562 5.562 22 C -0.299 4.299 23 H 0.103 0.897 24 C 0.023 3.977 25 N -0.902 5.902 26 Si 0.930 3.070 27 H -0.273 1.273 28 H -0.285 1.285 29 H -0.274 1.274 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.087 0.913 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.078 0.922 40 H 0.094 0.906 41 H 0.065 0.935 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.089 0.911 46 H 0.081 0.919 47 H 0.091 0.909 48 H 0.050 0.950 49 H 0.392 0.608 50 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.884 6.895 -17.272 21.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.099 3.901 3 C -0.198 4.198 4 C -0.239 4.239 5 O -0.276 6.276 6 C 0.409 3.591 7 O -0.469 6.469 8 N -0.326 5.326 9 C 0.023 3.977 10 C -0.066 4.066 11 H 0.125 0.875 12 C -0.184 4.184 13 C -0.188 4.188 14 C -0.055 4.055 15 H 0.145 0.855 16 C 0.006 3.994 17 N -0.200 5.200 18 C -0.097 4.097 19 C 0.228 3.772 20 O -0.464 6.464 21 N -0.199 5.199 22 C -0.429 4.429 23 H 0.121 0.879 24 C -0.179 4.179 25 N -0.543 5.543 26 Si 0.757 3.243 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.199 1.199 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.106 0.894 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.106 0.894 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.097 0.903 40 H 0.112 0.888 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.107 0.893 46 H 0.099 0.901 47 H 0.109 0.891 48 H 0.068 0.932 49 H 0.225 0.775 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.671 7.465 -16.776 21.757 hybrid contribution 1.425 -0.418 -0.073 1.486 sum -10.246 7.048 -16.848 20.941 Atomic orbital electron populations 1.22502 0.94123 1.05018 1.02290 1.22024 0.94288 0.91525 0.82299 1.21856 1.02307 0.92633 1.03012 1.22504 1.01509 1.03482 0.96429 1.86320 1.71454 1.23795 1.46070 1.17939 0.78847 0.80524 0.81830 1.90854 1.42107 1.70494 1.43437 1.47029 1.52275 1.12106 1.21204 1.21810 0.95933 0.77744 1.02235 1.23528 0.94843 0.98973 0.89256 0.87491 1.22834 0.98092 0.98068 0.99435 1.22900 0.99969 0.97886 0.98078 1.23478 0.95428 0.91735 0.94849 0.85513 1.21844 0.91244 0.95283 0.91020 1.65125 1.29977 1.02900 1.21953 1.21978 0.94337 0.97013 0.96333 1.19694 0.83335 0.87595 0.86570 1.90507 1.62923 1.24581 1.68360 1.41877 1.27664 1.23514 1.26834 1.19642 1.11731 1.07218 1.04312 0.87935 1.25262 0.96976 0.96148 0.99501 1.69606 1.25094 1.18140 1.41427 0.85925 0.78375 0.78930 0.81046 1.19873 1.20997 1.19908 0.92219 0.91371 0.89380 0.91459 0.90312 0.91432 0.89397 0.91366 0.92270 0.90345 0.88760 0.91619 0.91351 0.91538 0.91522 0.89315 0.90080 0.89127 0.93166 0.77500 0.91805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.78 8.37 37.15 0.31 -1.47 16 2 C 0.14 1.39 1.13 -90.62 -0.10 1.28 16 3 C -0.14 -1.09 8.85 37.16 0.33 -0.76 16 4 C -0.18 -1.79 8.37 37.16 0.31 -1.48 16 5 O -0.36 -4.61 8.58 -40.32 -0.35 -4.96 16 6 C 0.65 9.03 7.74 54.06 0.42 9.44 16 7 O -0.58 -8.65 11.34 -19.28 -0.22 -8.87 16 8 N -0.59 -7.80 2.26 -177.63 -0.40 -8.20 16 9 C 0.14 1.77 5.90 -3.22 -0.02 1.75 16 10 C 0.04 0.54 3.66 -65.42 -0.24 0.30 16 11 H 0.11 1.14 8.11 -51.92 -0.42 0.72 16 12 C -0.15 -1.76 5.52 -25.26 -0.14 -1.90 16 13 C -0.15 -2.01 5.53 -25.27 -0.14 -2.15 16 14 C 0.05 0.84 3.12 -65.66 -0.20 0.63 16 15 H 0.13 2.36 5.97 -51.93 -0.31 2.05 16 16 C 0.13 1.79 5.87 -3.48 -0.02 1.77 16 17 N -0.48 -7.46 4.76 -214.49 -1.02 -8.48 16 18 C 0.03 0.59 5.32 -4.98 -0.03 0.57 16 19 C 0.44 9.96 7.22 -10.99 -0.08 9.88 16 20 O -0.58 -14.78 14.11 5.54 0.08 -14.70 16 21 N -0.56 -13.80 5.29 -10.96 -0.06 -13.86 16 22 C -0.30 -8.13 9.68 -14.93 -0.14 -8.28 16 23 H 0.10 2.91 7.16 -52.49 -0.38 2.54 16 24 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 25 N -0.90 -24.15 13.05 55.50 0.72 -23.42 16 26 Si 0.93 20.74 29.55 -169.99 -5.02 15.71 16 27 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 28 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 29 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.09 1.06 5.88 -51.93 -0.31 0.76 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.09 1.06 5.88 -51.93 -0.31 0.75 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.09 1.11 7.10 -51.93 -0.37 0.74 16 41 H 0.07 0.76 8.08 -51.93 -0.42 0.34 16 42 H 0.07 0.84 7.84 -51.93 -0.41 0.43 16 43 H 0.07 0.93 8.10 -51.93 -0.42 0.51 16 44 H 0.07 0.88 7.83 -51.93 -0.41 0.47 16 45 H 0.09 1.16 7.04 -51.93 -0.37 0.79 16 46 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 47 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 48 H 0.05 0.79 6.99 -51.92 -0.36 0.43 16 49 H 0.39 9.26 7.90 -40.82 -0.32 8.94 16 50 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 385.66 15.07 5.81 5.81 Total: -1.00 -30.46 385.66 -8.45 -38.91 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: -8.15 Total: 11.96 kcal Atomic # 6 Polarization: 9.93 SS G_CDS: 0.16 Total: 10.09 kcal Atomic # 7 Polarization: -53.20 SS G_CDS: -0.76 Total: -53.96 kcal Atomic # 8 Polarization: -28.04 SS G_CDS: -0.49 Total: -28.53 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -30.46 -8.45 -38.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852777077.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.252 kcal (2) G-P(sol) polarization free energy of solvation -30.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds