Wall clock time and date at job start Sat Apr 11 2020 05:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.46980 * 2 1 4 4 C 1.52996 * 109.47572 * 240.00168 * 2 1 3 5 5 O 1.45201 * 109.47304 * 119.99911 * 2 1 3 6 6 C 1.34638 * 116.99929 * 60.00107 * 5 2 1 7 7 O 1.21509 * 119.99666 * 0.02562 * 6 5 2 8 8 N 1.34777 * 120.00196 * 180.02562 * 6 5 2 9 9 C 1.47149 * 120.68303 * 180.02562 * 8 6 5 10 10 C 1.53891 * 108.04063 * 132.61311 * 9 8 6 11 11 H 1.09007 * 112.12083 * 182.65653 * 10 9 8 12 12 C 1.54542 * 107.81171 * 306.64372 * 10 9 8 13 13 C 1.54260 * 104.93800 * 88.97264 * 12 10 9 14 14 C 1.54534 * 104.93991 * 359.97438 * 13 12 10 15 15 H 1.09001 * 112.20624 * 146.47244 * 14 13 12 16 16 C 1.47152 * 120.67975 * 359.71919 * 8 6 5 17 17 N 1.48729 * 107.18103 * 58.43865 * 10 9 8 18 18 C 1.46891 * 111.00747 * 167.47507 * 17 10 9 19 19 C 1.50696 * 109.47633 * 176.81511 * 18 17 10 20 20 O 1.21299 * 119.99631 * 6.20133 * 19 18 17 21 21 N 1.34773 * 120.00181 * 186.19943 * 19 18 17 22 22 C 1.37103 * 119.99931 * 180.02562 * 21 19 18 23 23 H 1.08000 * 119.99875 * 359.97438 * 22 21 19 24 24 C 1.38948 * 120.00066 * 180.02562 * 22 21 19 25 25 N 1.31416 * 119.99767 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 120.00040 * 180.02562 * 24 22 21 27 27 H 1.48493 * 109.47331 * 59.99915 * 26 24 22 28 28 H 1.48500 * 109.46731 * 179.97438 * 26 24 22 29 29 H 1.48498 * 109.46789 * 299.99298 * 26 24 22 30 30 H 1.08996 * 109.47278 * 299.99798 * 1 2 3 31 31 H 1.09002 * 109.47051 * 60.00495 * 1 2 3 32 32 H 1.09003 * 109.46946 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.47007 * 179.97438 * 3 2 1 34 34 H 1.08991 * 109.47276 * 299.99726 * 3 2 1 35 35 H 1.09002 * 109.47321 * 60.00166 * 3 2 1 36 36 H 1.09003 * 109.46765 * 299.99841 * 4 2 1 37 37 H 1.09002 * 109.47473 * 59.99596 * 4 2 1 38 38 H 1.09007 * 109.47291 * 180.02562 * 4 2 1 39 39 H 1.09001 * 109.74654 * 252.24327 * 9 8 6 40 40 H 1.09000 * 109.74928 * 12.92143 * 9 8 6 41 41 H 1.09002 * 110.35133 * 207.83690 * 12 10 9 42 42 H 1.08999 * 110.34636 * 329.99947 * 12 10 9 43 43 H 1.08999 * 110.34713 * 118.86635 * 13 12 10 44 44 H 1.09001 * 110.34570 * 241.13366 * 13 12 10 45 45 H 1.09000 * 109.75310 * 347.02444 * 16 8 6 46 46 H 1.09001 * 109.74815 * 107.74962 * 16 8 6 47 47 H 1.09006 * 109.47365 * 296.82302 * 18 17 10 48 48 H 1.09008 * 109.46979 * 56.81707 * 18 17 10 49 49 H 0.97000 * 120.00131 * 359.97438 * 21 19 18 50 50 H 0.97001 * 119.99393 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6523 -1.9723 1.3383 7 8 0.9517 -2.5096 0.5035 8 7 2.0672 -2.6654 2.4172 9 6 1.6813 -4.0737 2.5989 10 6 2.9449 -4.8702 2.9693 11 1 2.7421 -5.9360 3.0747 12 6 4.0168 -4.5832 1.8937 13 6 4.7694 -3.3374 2.4048 14 6 4.0858 -2.9805 3.7439 15 1 4.7872 -2.5624 4.4660 16 6 2.9211 -2.0313 3.4341 17 7 3.4977 -4.2648 4.2103 18 6 4.5252 -5.1295 4.8055 19 6 5.1158 -4.4495 6.0137 20 8 4.6446 -3.4055 6.4129 21 7 6.1675 -5.0013 6.6507 22 6 6.7045 -4.3829 7.7502 23 1 6.2850 -3.4534 8.1056 24 6 7.7892 -4.9515 8.4066 25 7 8.2999 -6.0824 7.9738 26 14 8.5204 -4.1093 9.9051 27 1 7.4836 -3.9908 10.9615 28 1 9.6593 -4.9126 10.4178 29 1 8.9993 -2.7554 9.5274 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9563 -0.8899 35 1 1.6766 1.9564 0.8900 36 1 1.6767 -1.7489 -1.2492 37 1 1.6767 -0.2074 -2.1392 38 1 3.1301 -0.7215 -1.2489 39 1 0.9472 -4.1539 3.4006 40 1 1.2585 -4.4623 1.6724 41 1 4.6996 -5.4282 1.8041 42 1 3.5443 -4.3753 0.9337 43 1 5.8219 -3.5702 2.5663 44 1 4.6666 -2.5154 1.6963 45 1 3.3087 -1.0867 3.0527 46 1 2.3434 -1.8537 4.3413 47 1 4.0747 -6.0759 5.1051 48 1 5.3110 -5.3168 4.0736 49 1 6.5441 -5.8364 6.3317 50 1 9.0569 -6.4795 8.4323 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852777077.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:44 Heat of formation + Delta-G solvation = -115.088312 kcal Electronic energy + Delta-G solvation = -31475.605027 eV Core-core repulsion = 27309.537732 eV Total energy + Delta-G solvation = -4166.067295 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.36698 -41.21479 -39.72310 -38.03444 -36.09017 -35.75971 -34.71876 -33.27429 -32.57193 -32.26333 -29.19587 -28.32979 -28.27457 -27.35960 -25.88566 -25.50188 -23.22156 -21.79647 -21.02037 -20.92600 -19.97977 -19.72922 -18.87850 -17.83398 -17.68669 -17.44253 -16.73381 -16.50805 -16.32268 -15.98079 -15.79524 -15.52269 -15.25098 -15.17491 -15.01918 -14.87048 -14.38734 -13.99226 -13.81855 -13.64779 -13.47572 -13.34674 -13.26404 -13.06047 -12.92517 -12.84121 -12.83778 -12.56000 -12.42571 -12.39236 -12.31418 -12.16120 -12.12373 -11.95558 -11.89826 -11.44394 -11.40980 -11.35434 -11.01329 -10.28042 -9.98451 -9.85674 -9.38795 -8.44496 -5.92498 1.15618 1.40560 1.42636 1.52971 1.76808 2.08597 2.29507 2.73145 2.79216 3.23033 3.30284 3.62964 3.73298 3.78294 3.83321 3.87075 3.97872 3.98470 4.18966 4.28208 4.31533 4.39935 4.47152 4.57286 4.58714 4.62492 4.64350 4.68501 4.73469 4.76666 4.79042 4.83688 4.85946 4.90045 4.90585 4.97123 5.08823 5.13185 5.21399 5.31100 5.33070 5.42942 5.44590 5.49163 5.82595 5.88264 6.08954 6.35372 6.62880 7.15428 7.28584 7.59608 8.14850 8.72714 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022234 B = 0.002543 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.032145 B =11006.787264 C =11588.784673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.123 3.877 3 C -0.137 4.137 4 C -0.177 4.177 5 O -0.371 6.371 6 C 0.653 3.347 7 O -0.590 6.590 8 N -0.586 5.586 9 C 0.144 3.856 10 C 0.050 3.950 11 H 0.134 0.866 12 C -0.137 4.137 13 C -0.142 4.142 14 C 0.053 3.947 15 H 0.090 0.910 16 C 0.139 3.861 17 N -0.493 5.493 18 C 0.049 3.951 19 C 0.443 3.557 20 O -0.612 6.612 21 N -0.574 5.574 22 C -0.329 4.329 23 H 0.080 0.920 24 C -0.013 4.013 25 N -0.921 5.921 26 Si 0.990 3.010 27 H -0.273 1.273 28 H -0.272 1.272 29 H -0.272 1.272 30 H 0.057 0.943 31 H 0.091 0.909 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.103 0.897 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.091 0.909 38 H 0.057 0.943 39 H 0.079 0.921 40 H 0.103 0.897 41 H 0.078 0.922 42 H 0.071 0.929 43 H 0.059 0.941 44 H 0.068 0.932 45 H 0.095 0.905 46 H 0.066 0.934 47 H 0.113 0.887 48 H 0.067 0.933 49 H 0.395 0.605 50 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.191 6.848 -18.663 22.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.087 3.913 3 C -0.194 4.194 4 C -0.234 4.234 5 O -0.286 6.286 6 C 0.408 3.592 7 O -0.482 6.482 8 N -0.326 5.326 9 C 0.023 3.977 10 C -0.059 4.059 11 H 0.152 0.848 12 C -0.176 4.176 13 C -0.181 4.181 14 C -0.056 4.056 15 H 0.108 0.892 16 C 0.016 3.984 17 N -0.216 5.216 18 C -0.083 4.083 19 C 0.231 3.769 20 O -0.498 6.498 21 N -0.212 5.212 22 C -0.459 4.459 23 H 0.098 0.902 24 C -0.213 4.213 25 N -0.562 5.562 26 Si 0.814 3.186 27 H -0.198 1.198 28 H -0.197 1.197 29 H -0.197 1.197 30 H 0.077 0.923 31 H 0.110 0.890 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.122 0.878 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.110 0.890 38 H 0.076 0.924 39 H 0.097 0.903 40 H 0.121 0.879 41 H 0.097 0.903 42 H 0.089 0.911 43 H 0.078 0.922 44 H 0.087 0.913 45 H 0.113 0.887 46 H 0.085 0.915 47 H 0.131 0.869 48 H 0.085 0.915 49 H 0.229 0.771 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.985 7.409 -18.191 23.009 hybrid contribution 1.440 -0.335 0.294 1.507 sum -10.546 7.074 -17.897 21.944 Atomic orbital electron populations 1.22449 0.93856 1.03711 1.03420 1.22413 0.94689 0.92610 0.81612 1.21885 1.02276 0.90969 1.04230 1.22447 1.01379 1.02304 0.97243 1.86330 1.71570 1.23266 1.47401 1.18016 0.78661 0.80870 0.81652 1.90854 1.42618 1.70900 1.43805 1.47053 1.52061 1.12566 1.20919 1.21889 0.95965 0.77188 1.02661 1.23651 0.94514 1.00230 0.87540 0.84848 1.22774 0.97967 0.97595 0.99235 1.22812 0.99548 0.98822 0.96967 1.23283 0.95429 0.92017 0.94877 0.89240 1.21634 0.90689 0.95326 0.90722 1.65122 1.29493 1.02983 1.23977 1.21847 0.95144 0.97164 0.94109 1.20680 0.82098 0.86931 0.87224 1.90487 1.63605 1.26171 1.69579 1.41940 1.28569 1.23809 1.26865 1.19602 1.12987 1.07251 1.06044 0.90225 1.25997 0.96823 0.96681 1.01781 1.69669 1.25380 1.18827 1.42367 0.85032 0.77781 0.78084 0.77728 1.19785 1.19695 1.19705 0.92349 0.88991 0.91789 0.91530 0.87800 0.91502 0.91728 0.89044 0.92363 0.90307 0.87880 0.90313 0.91065 0.92199 0.91321 0.88722 0.91538 0.86877 0.91456 0.77118 0.91406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.24 8.37 71.98 0.60 -2.64 16 2 C 0.12 2.34 1.13 -10.80 -0.01 2.33 16 3 C -0.14 -1.84 8.85 71.98 0.64 -1.20 16 4 C -0.18 -3.20 8.37 71.98 0.60 -2.60 16 5 O -0.37 -9.22 8.58 -55.48 -0.48 -9.70 16 6 C 0.65 17.62 7.74 129.79 1.00 18.62 16 7 O -0.59 -17.28 11.34 19.81 0.22 -17.05 16 8 N -0.59 -15.20 2.26 -946.31 -2.13 -17.33 16 9 C 0.14 3.31 5.90 86.56 0.51 3.82 16 10 C 0.05 1.11 3.66 45.39 0.17 1.28 16 11 H 0.13 2.35 8.11 -2.38 -0.02 2.33 16 12 C -0.14 -3.01 5.52 31.55 0.17 -2.83 16 13 C -0.14 -3.71 5.53 31.54 0.17 -3.54 16 14 C 0.05 1.66 3.12 45.21 0.14 1.80 16 15 H 0.09 3.49 5.97 -2.39 -0.01 3.47 16 16 C 0.14 3.91 5.87 86.39 0.51 4.42 16 17 N -0.49 -14.94 4.76 -832.51 -3.96 -18.90 16 18 C 0.05 1.59 5.32 85.56 0.46 2.05 16 19 C 0.44 20.22 7.22 87.66 0.63 20.86 16 20 O -0.61 -32.26 14.11 -3.09 -0.04 -32.31 16 21 N -0.57 -28.69 5.29 -306.98 -1.62 -30.31 16 22 C -0.33 -18.31 9.68 84.04 0.81 -17.50 16 23 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 24 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 25 N -0.92 -49.24 13.05 21.66 0.28 -48.96 16 26 Si 0.99 42.54 29.55 68.60 2.03 44.57 16 27 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 28 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 29 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 30 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.06 1.51 5.88 -2.39 -0.01 1.49 16 33 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 34 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.06 1.50 5.88 -2.39 -0.01 1.49 16 37 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 39 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.10 2.23 7.10 -2.39 -0.02 2.22 16 41 H 0.08 1.56 8.08 -2.39 -0.02 1.54 16 42 H 0.07 1.57 7.84 -2.39 -0.02 1.55 16 43 H 0.06 1.63 8.10 -2.39 -0.02 1.61 16 44 H 0.07 1.75 7.83 -2.39 -0.02 1.74 16 45 H 0.09 2.51 7.04 -2.39 -0.02 2.49 16 46 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 47 H 0.11 3.24 8.14 -2.38 -0.02 3.23 16 48 H 0.07 2.00 6.99 -2.38 -0.02 1.98 16 49 H 0.40 18.85 7.90 -92.71 -0.73 18.12 16 50 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16 Total: -1.00 -66.84 385.66 1.39 -65.45 By element: Atomic # 1 Polarization: 39.69 SS G_CDS: 0.21 Total: 39.90 kcal Atomic # 6 Polarization: 17.76 SS G_CDS: 6.88 Total: 24.64 kcal Atomic # 7 Polarization: -108.06 SS G_CDS: -7.44 Total: -115.50 kcal Atomic # 8 Polarization: -58.76 SS G_CDS: -0.29 Total: -59.05 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -66.84 1.39 -65.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852777077.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.637 kcal (2) G-P(sol) polarization free energy of solvation -66.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds