Wall clock time and date at job start Sat Apr 11 2020 05:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47220 * 2 1 4 4 C 1.53002 * 109.47108 * 239.99647 * 2 1 3 5 5 O 1.45205 * 109.47185 * 119.99906 * 2 1 3 6 6 C 1.34638 * 116.99879 * 59.99459 * 5 2 1 7 7 O 1.21513 * 119.99786 * 0.02562 * 6 5 2 8 8 N 1.34773 * 119.99798 * 179.97438 * 6 5 2 9 9 C 1.47864 * 126.92744 * 0.02562 * 8 6 5 10 10 C 1.56023 * 105.11301 * 181.93205 * 9 8 6 11 11 H 1.09002 * 116.90638 * 159.22399 * 10 9 8 12 12 C 1.57088 * 99.59762 * 32.80712 * 10 9 8 13 13 C 1.49276 * 126.92527 * 180.02562 * 8 6 5 14 14 H 1.09001 * 116.12596 * 16.85693 * 13 8 6 15 15 C 1.56017 * 104.12760 * 246.89389 * 13 8 6 16 16 N 1.48286 * 105.06493 * 288.79766 * 15 13 8 17 17 C 1.46902 * 110.99918 * 122.54849 * 16 15 13 18 18 C 1.50701 * 109.46953 * 183.75712 * 17 16 15 19 19 O 1.21284 * 120.00321 * 359.97438 * 18 17 16 20 20 N 1.34780 * 119.99851 * 179.97438 * 18 17 16 21 21 C 1.46496 * 120.00123 * 179.97438 * 20 18 17 22 22 C 1.50697 * 109.47174 * 180.02562 * 21 20 18 23 23 H 1.07997 * 120.00107 * 0.02562 * 22 21 20 24 24 C 1.37881 * 120.00163 * 179.97438 * 22 21 20 25 25 N 1.31512 * 120.00452 * 179.97438 * 24 22 21 26 26 Si 1.86808 * 119.99728 * 0.02562 * 24 22 21 27 27 H 1.48499 * 109.47365 * 89.99576 * 26 24 22 28 28 H 1.48497 * 109.46851 * 210.00035 * 26 24 22 29 29 H 1.48504 * 109.47075 * 329.99381 * 26 24 22 30 30 H 1.09007 * 109.47200 * 300.00028 * 1 2 3 31 31 H 1.09006 * 109.47364 * 59.99917 * 1 2 3 32 32 H 1.08993 * 109.47444 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.46828 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.46911 * 299.99560 * 3 2 1 35 35 H 1.08994 * 109.47303 * 59.99712 * 3 2 1 36 36 H 1.08993 * 109.47037 * 300.00333 * 4 2 1 37 37 H 1.09006 * 109.46652 * 60.00000 * 4 2 1 38 38 H 1.08999 * 109.47285 * 179.97438 * 4 2 1 39 39 H 1.09008 * 110.31280 * 63.02528 * 9 8 6 40 40 H 1.08994 * 110.31668 * 300.84449 * 9 8 6 41 41 H 1.09000 * 112.35922 * 64.32839 * 12 10 9 42 42 H 1.08994 * 112.35609 * 191.74771 * 12 10 9 43 43 H 1.09000 * 110.32052 * 169.90503 * 15 13 8 44 44 H 1.08994 * 110.32200 * 47.69305 * 15 13 8 45 45 H 1.08998 * 109.46691 * 303.75302 * 17 16 15 46 46 H 1.09003 * 109.47475 * 63.75857 * 17 16 15 47 47 H 0.97002 * 119.99829 * 0.02562 * 20 18 17 48 48 H 1.09003 * 109.47064 * 300.00665 * 21 20 18 49 49 H 1.09004 * 109.47274 * 60.00225 * 21 20 18 50 50 H 0.96993 * 120.00458 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6521 -1.9723 1.3384 7 8 0.9514 -2.5096 0.5037 8 7 2.0679 -2.6656 2.4167 9 6 2.9190 -2.1681 3.5188 10 6 3.1244 -3.3954 4.4600 11 1 3.9807 -3.3625 5.1337 12 6 3.1152 -4.5482 3.3930 13 6 1.7622 -4.0907 2.7392 14 1 1.3899 -4.7000 1.9156 15 6 0.8686 -4.0091 4.0155 16 7 1.7862 -3.5899 5.1023 17 6 1.3204 -2.3486 5.7350 18 6 2.3231 -1.9050 6.7689 19 8 3.3266 -2.5587 6.9602 20 7 2.1046 -0.7817 7.4810 21 6 3.0790 -0.3507 8.4865 22 6 2.6013 0.9227 9.1355 23 1 1.6653 1.3664 8.8299 24 6 3.3587 1.5209 10.1202 25 7 2.9420 2.6325 10.6862 26 14 4.9774 0.7531 10.6493 27 1 6.0795 1.2985 9.8167 28 1 5.2322 1.0703 12.0774 29 1 4.9072 -0.7199 10.4744 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 3.1300 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9564 0.8899 36 1 1.6766 -1.7489 -1.2492 37 1 1.6766 -0.2075 -2.1392 38 1 3.1300 -0.7210 -1.2495 39 1 2.4145 -1.3623 4.0523 40 1 3.8777 -1.8240 3.1309 41 1 3.9542 -4.4792 2.7007 42 1 3.0421 -5.5352 3.8496 43 1 0.4379 -4.9851 4.2391 44 1 0.0804 -3.2688 3.8790 45 1 1.2127 -1.5728 4.9771 46 1 0.3575 -2.5243 6.2147 47 1 1.3018 -0.2591 7.3283 48 1 3.1862 -1.1265 9.2446 49 1 4.0423 -0.1755 8.0073 50 1 3.4750 3.0535 11.3787 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879218337.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:53 Heat of formation + Delta-G solvation = -64.120554 kcal Electronic energy + Delta-G solvation = -31108.929368 eV Core-core repulsion = 26945.072201 eV Total energy + Delta-G solvation = -4163.857167 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.63886 -40.40939 -38.71015 -36.97251 -34.64262 -34.32425 -33.74217 -32.40844 -31.27005 -30.01889 -28.38444 -27.65026 -27.63068 -26.06491 -25.28552 -22.98398 -22.07982 -21.01317 -20.50385 -19.93180 -19.16238 -18.13650 -17.44753 -16.93537 -16.72878 -16.17037 -16.09409 -15.61788 -15.41358 -14.96215 -14.65678 -14.27363 -14.20362 -14.00961 -13.73606 -13.32844 -13.10838 -12.90166 -12.71852 -12.66223 -12.44258 -12.40038 -12.27254 -12.20433 -12.14117 -12.07868 -11.80401 -11.64371 -11.59268 -11.50986 -11.45975 -11.20709 -11.02082 -10.78618 -10.58630 -10.24010 -9.99568 -9.52820 -9.18556 -9.01748 -8.80678 -8.40033 -8.17446 -6.24005 -4.26604 1.81692 2.63758 3.14631 3.24647 3.31266 3.39462 3.47455 3.58791 4.01421 4.19221 4.22485 4.30879 4.46231 4.51064 4.54064 4.64803 4.71550 4.92869 5.11102 5.13930 5.16384 5.22098 5.25604 5.28031 5.32794 5.38450 5.43936 5.44501 5.51539 5.52847 5.58925 5.59294 5.63742 5.73657 5.75566 5.90862 6.01050 6.02291 6.07112 6.28200 6.58152 6.68660 6.82609 7.03759 7.18291 7.27484 7.35775 8.09764 8.13214 8.47012 8.72169 8.88085 9.35815 10.87959 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012384 B = 0.002952 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2260.394183 B = 9481.775270 C =10915.817472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.135 3.865 3 C -0.142 4.142 4 C -0.182 4.182 5 O -0.360 6.360 6 C 0.670 3.330 7 O -0.571 6.571 8 N -0.608 5.608 9 C 0.062 3.938 10 C 0.065 3.935 11 H 0.157 0.843 12 C -0.138 4.138 13 C 0.130 3.870 14 H 0.131 0.869 15 C 0.025 3.975 16 N -0.495 5.495 17 C 0.018 3.982 18 C 0.503 3.497 19 O -0.544 6.544 20 N -0.706 5.706 21 C 0.223 3.777 22 C -0.545 4.545 23 H 0.079 0.921 24 C 0.078 3.922 25 N -0.892 5.892 26 Si 0.877 3.123 27 H -0.273 1.273 28 H -0.283 1.283 29 H -0.260 1.260 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.067 0.933 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.086 0.914 37 H 0.069 0.931 38 H 0.059 0.941 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.085 0.915 42 H 0.101 0.899 43 H 0.096 0.904 44 H 0.064 0.936 45 H 0.067 0.933 46 H 0.103 0.897 47 H 0.396 0.604 48 H 0.026 0.974 49 H 0.020 0.980 50 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.588 -9.755 -22.324 24.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.099 3.901 3 C -0.199 4.199 4 C -0.239 4.239 5 O -0.274 6.274 6 C 0.426 3.574 7 O -0.461 6.461 8 N -0.350 5.350 9 C -0.061 4.061 10 C -0.043 4.043 11 H 0.174 0.826 12 C -0.176 4.176 13 C 0.028 3.972 14 H 0.149 0.851 15 C -0.104 4.104 16 N -0.219 5.219 17 C -0.114 4.114 18 C 0.287 3.713 19 O -0.422 6.422 20 N -0.355 5.355 21 C 0.100 3.900 22 C -0.583 4.583 23 H 0.097 0.903 24 C -0.126 4.126 25 N -0.529 5.529 26 Si 0.703 3.297 27 H -0.199 1.199 28 H -0.209 1.209 29 H -0.184 1.184 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.105 0.895 33 H 0.086 0.914 34 H 0.099 0.901 35 H 0.087 0.913 36 H 0.105 0.895 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.099 0.901 40 H 0.095 0.905 41 H 0.103 0.897 42 H 0.119 0.881 43 H 0.114 0.886 44 H 0.082 0.918 45 H 0.085 0.915 46 H 0.121 0.879 47 H 0.229 0.771 48 H 0.044 0.956 49 H 0.038 0.962 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.064 -10.458 -21.983 24.536 hybrid contribution 0.237 0.968 -0.336 1.052 sum -2.827 -9.490 -22.320 24.418 Atomic orbital electron populations 1.22512 0.93982 1.04945 1.02569 1.22090 0.94397 0.91615 0.82043 1.21868 1.02338 0.92432 1.03252 1.22507 1.01526 1.03384 0.96500 1.86360 1.71315 1.23430 1.46325 1.17532 0.78544 0.80431 0.80869 1.90883 1.41760 1.70658 1.42847 1.48031 1.53171 1.12676 1.21136 1.23375 0.95524 0.99084 0.88146 1.24994 0.94653 0.91704 0.92958 0.82570 1.24041 0.96367 0.99780 0.97413 1.24100 0.96648 0.79791 0.96658 0.85127 1.23784 0.95102 1.02409 0.89067 1.64816 1.01928 1.29000 1.26173 1.22390 0.99273 0.92580 0.97109 1.20241 0.87176 0.81340 0.82556 1.90595 1.29128 1.54526 1.67961 1.46180 1.25641 1.24606 1.39025 1.19478 0.88242 0.95633 0.86601 1.21090 1.09047 1.07007 1.21108 0.90297 1.24802 0.97974 0.94478 0.95367 1.69875 1.38777 1.18147 1.26140 0.86813 0.83842 0.80834 0.78177 1.19866 1.20913 1.18438 0.92087 0.91139 0.89486 0.91437 0.90128 0.91250 0.89483 0.91161 0.92237 0.90071 0.90535 0.89666 0.88051 0.88555 0.91791 0.91512 0.87861 0.77078 0.95640 0.96180 0.92236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.80 8.37 37.16 0.31 -1.49 16 2 C 0.14 1.39 1.13 -90.62 -0.10 1.29 16 3 C -0.14 -1.16 8.85 37.16 0.33 -0.83 16 4 C -0.18 -1.73 8.37 37.16 0.31 -1.42 16 5 O -0.36 -4.60 9.56 -40.32 -0.39 -4.98 16 6 C 0.67 8.87 7.98 54.05 0.43 9.30 16 7 O -0.57 -8.21 12.23 -19.28 -0.24 -8.45 16 8 N -0.61 -7.17 2.95 -162.50 -0.48 -7.65 16 9 C 0.06 0.75 6.01 -1.68 -0.01 0.74 16 10 C 0.06 0.78 4.17 -62.31 -0.26 0.52 16 11 H 0.16 2.21 6.39 -51.93 -0.33 1.88 16 12 C -0.14 -1.27 6.80 -22.30 -0.15 -1.42 16 13 C 0.13 1.27 5.23 -62.56 -0.33 0.94 16 14 H 0.13 1.16 8.06 -51.93 -0.42 0.74 16 15 C 0.03 0.25 6.28 -1.44 -0.01 0.24 16 16 N -0.50 -6.15 5.16 -218.17 -1.13 -7.28 16 17 C 0.02 0.23 4.66 -4.97 -0.02 0.21 16 18 C 0.50 8.87 7.49 -10.98 -0.08 8.79 16 19 O -0.54 -11.18 14.02 5.55 0.08 -11.10 16 20 N -0.71 -13.60 5.55 -61.47 -0.34 -13.94 16 21 C 0.22 5.29 4.50 -5.20 -0.02 5.27 16 22 C -0.54 -14.65 9.83 -34.44 -0.34 -14.99 16 23 H 0.08 2.21 7.84 -52.49 -0.41 1.80 16 24 C 0.08 2.16 5.47 -17.82 -0.10 2.07 16 25 N -0.89 -26.21 13.96 55.43 0.77 -25.44 16 26 Si 0.88 21.08 27.47 -169.99 -4.67 16.41 16 27 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 28 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 29 H -0.26 -6.19 6.54 56.52 0.37 -5.82 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.09 1.03 5.88 -51.93 -0.31 0.72 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.09 1.00 5.88 -51.93 -0.31 0.70 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.08 1.07 5.22 -51.92 -0.27 0.80 16 40 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 44 H 0.06 0.67 7.62 -51.93 -0.40 0.27 16 45 H 0.07 0.83 5.65 -51.93 -0.29 0.54 16 46 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 47 H 0.40 6.77 8.32 -40.82 -0.34 6.43 16 48 H 0.03 0.65 7.20 -51.93 -0.37 0.27 16 49 H 0.02 0.50 7.57 -51.93 -0.39 0.10 16 50 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 388.43 15.07 5.85 5.85 Total: -1.00 -32.31 388.43 -8.65 -40.96 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -8.08 Total: 6.40 kcal Atomic # 6 Polarization: 9.26 SS G_CDS: -0.04 Total: 9.22 kcal Atomic # 7 Polarization: -53.14 SS G_CDS: -1.17 Total: -54.31 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: -0.54 Total: -24.53 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.67 Total: 16.41 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.31 -8.65 -40.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879218337.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.158 kcal (2) G-P(sol) polarization free energy of solvation -32.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds