Wall clock time and date at job start Sat Apr 11 2020 05:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47220 * 2 1 4 4 C 1.53002 * 109.47108 * 239.99647 * 2 1 3 5 5 O 1.45205 * 109.47185 * 119.99906 * 2 1 3 6 6 C 1.34638 * 116.99879 * 59.99459 * 5 2 1 7 7 O 1.21513 * 119.99786 * 0.02562 * 6 5 2 8 8 N 1.34773 * 119.99798 * 179.97438 * 6 5 2 9 9 C 1.47864 * 126.92744 * 0.02562 * 8 6 5 10 10 C 1.56023 * 105.11301 * 181.93205 * 9 8 6 11 11 H 1.09002 * 116.90638 * 159.22399 * 10 9 8 12 12 C 1.57088 * 99.59762 * 32.80712 * 10 9 8 13 13 C 1.49276 * 126.92527 * 180.02562 * 8 6 5 14 14 H 1.09001 * 116.12596 * 16.85693 * 13 8 6 15 15 C 1.56017 * 104.12760 * 246.89389 * 13 8 6 16 16 N 1.48286 * 105.06493 * 288.79766 * 15 13 8 17 17 C 1.46902 * 110.99918 * 122.54849 * 16 15 13 18 18 C 1.50701 * 109.46953 * 183.75712 * 17 16 15 19 19 O 1.21284 * 120.00321 * 359.97438 * 18 17 16 20 20 N 1.34780 * 119.99851 * 179.97438 * 18 17 16 21 21 C 1.46496 * 120.00123 * 179.97438 * 20 18 17 22 22 C 1.50697 * 109.47174 * 180.02562 * 21 20 18 23 23 H 1.07997 * 120.00107 * 0.02562 * 22 21 20 24 24 C 1.37881 * 120.00163 * 179.97438 * 22 21 20 25 25 N 1.31512 * 120.00452 * 179.97438 * 24 22 21 26 26 Si 1.86808 * 119.99728 * 0.02562 * 24 22 21 27 27 H 1.48499 * 109.47365 * 89.99576 * 26 24 22 28 28 H 1.48497 * 109.46851 * 210.00035 * 26 24 22 29 29 H 1.48504 * 109.47075 * 329.99381 * 26 24 22 30 30 H 1.09007 * 109.47200 * 300.00028 * 1 2 3 31 31 H 1.09006 * 109.47364 * 59.99917 * 1 2 3 32 32 H 1.08993 * 109.47444 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.46828 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.46911 * 299.99560 * 3 2 1 35 35 H 1.08994 * 109.47303 * 59.99712 * 3 2 1 36 36 H 1.08993 * 109.47037 * 300.00333 * 4 2 1 37 37 H 1.09006 * 109.46652 * 60.00000 * 4 2 1 38 38 H 1.08999 * 109.47285 * 179.97438 * 4 2 1 39 39 H 1.09008 * 110.31280 * 63.02528 * 9 8 6 40 40 H 1.08994 * 110.31668 * 300.84449 * 9 8 6 41 41 H 1.09000 * 112.35922 * 64.32839 * 12 10 9 42 42 H 1.08994 * 112.35609 * 191.74771 * 12 10 9 43 43 H 1.09000 * 110.32052 * 169.90503 * 15 13 8 44 44 H 1.08994 * 110.32200 * 47.69305 * 15 13 8 45 45 H 1.08998 * 109.46691 * 303.75302 * 17 16 15 46 46 H 1.09003 * 109.47475 * 63.75857 * 17 16 15 47 47 H 0.97002 * 119.99829 * 0.02562 * 20 18 17 48 48 H 1.09003 * 109.47064 * 300.00665 * 21 20 18 49 49 H 1.09004 * 109.47274 * 60.00225 * 21 20 18 50 50 H 0.96993 * 120.00458 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6521 -1.9723 1.3384 7 8 0.9514 -2.5096 0.5037 8 7 2.0679 -2.6656 2.4167 9 6 2.9190 -2.1681 3.5188 10 6 3.1244 -3.3954 4.4600 11 1 3.9807 -3.3625 5.1337 12 6 3.1152 -4.5482 3.3930 13 6 1.7622 -4.0907 2.7392 14 1 1.3899 -4.7000 1.9156 15 6 0.8686 -4.0091 4.0155 16 7 1.7862 -3.5899 5.1023 17 6 1.3204 -2.3486 5.7350 18 6 2.3231 -1.9050 6.7689 19 8 3.3266 -2.5587 6.9602 20 7 2.1046 -0.7817 7.4810 21 6 3.0790 -0.3507 8.4865 22 6 2.6013 0.9227 9.1355 23 1 1.6653 1.3664 8.8299 24 6 3.3587 1.5209 10.1202 25 7 2.9420 2.6325 10.6862 26 14 4.9774 0.7531 10.6493 27 1 6.0795 1.2985 9.8167 28 1 5.2322 1.0703 12.0774 29 1 4.9072 -0.7199 10.4744 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 3.1300 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9564 0.8899 36 1 1.6766 -1.7489 -1.2492 37 1 1.6766 -0.2075 -2.1392 38 1 3.1300 -0.7210 -1.2495 39 1 2.4145 -1.3623 4.0523 40 1 3.8777 -1.8240 3.1309 41 1 3.9542 -4.4792 2.7007 42 1 3.0421 -5.5352 3.8496 43 1 0.4379 -4.9851 4.2391 44 1 0.0804 -3.2688 3.8790 45 1 1.2127 -1.5728 4.9771 46 1 0.3575 -2.5243 6.2147 47 1 1.3018 -0.2591 7.3283 48 1 3.1862 -1.1265 9.2446 49 1 4.0423 -0.1755 8.0073 50 1 3.4750 3.0535 11.3787 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879218337.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:52 Heat of formation + Delta-G solvation = -87.733801 kcal Electronic energy + Delta-G solvation = -31109.953315 eV Core-core repulsion = 26945.072201 eV Total energy + Delta-G solvation = -4164.881114 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.57752 -41.36850 -40.12406 -37.91285 -36.16843 -35.47944 -34.68937 -34.39157 -32.27714 -30.90735 -30.13610 -28.38814 -28.33643 -27.30531 -26.23342 -24.12595 -23.67311 -21.97112 -21.52780 -21.27186 -20.08985 -19.16142 -19.04426 -18.02580 -17.80897 -17.46215 -17.25807 -16.82201 -16.53692 -16.38960 -15.87375 -15.59610 -15.26405 -15.13780 -14.78392 -14.58860 -14.29201 -14.21963 -14.08612 -13.81988 -13.44957 -13.37947 -13.18379 -13.07273 -13.03707 -12.90511 -12.89622 -12.79349 -12.63844 -12.57256 -12.45765 -12.34468 -12.30828 -12.07631 -11.91877 -11.64916 -11.43039 -11.16948 -10.90979 -10.64698 -9.97634 -9.88708 -9.32865 -8.39206 -6.46346 0.95389 1.33921 1.36387 1.48688 1.65473 1.72839 2.26339 2.29789 2.69923 2.88177 2.96501 3.32864 3.38613 3.64536 3.71587 3.77039 3.83088 3.90883 3.91675 4.05314 4.20326 4.28371 4.41092 4.45041 4.53986 4.58979 4.63689 4.67912 4.73334 4.77135 4.80667 4.81957 4.83978 4.87038 4.93823 5.04896 5.05824 5.08291 5.13703 5.24755 5.27670 5.29002 5.42250 5.54365 5.64917 5.79519 6.10200 6.32499 6.55002 6.85776 7.16615 7.17011 7.42018 8.75643 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012384 B = 0.002952 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2260.394183 B = 9481.775270 C =10915.817472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.123 3.877 3 C -0.138 4.138 4 C -0.176 4.176 5 O -0.374 6.374 6 C 0.665 3.335 7 O -0.586 6.586 8 N -0.607 5.607 9 C 0.068 3.932 10 C 0.058 3.942 11 H 0.135 0.865 12 C -0.122 4.122 13 C 0.131 3.869 14 H 0.144 0.856 15 C 0.030 3.970 16 N -0.506 5.506 17 C 0.030 3.970 18 C 0.504 3.496 19 O -0.571 6.571 20 N -0.708 5.708 21 C 0.236 3.764 22 C -0.547 4.547 23 H 0.057 0.943 24 C 0.025 3.975 25 N -0.933 5.933 26 Si 0.939 3.061 27 H -0.265 1.265 28 H -0.276 1.276 29 H -0.258 1.258 30 H 0.056 0.944 31 H 0.093 0.907 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.105 0.895 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.092 0.908 38 H 0.058 0.942 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.092 0.908 42 H 0.116 0.884 43 H 0.119 0.881 44 H 0.061 0.939 45 H 0.077 0.923 46 H 0.124 0.876 47 H 0.406 0.594 48 H 0.013 0.987 49 H 0.013 0.987 50 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.559 -10.908 -23.790 26.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.087 3.913 3 C -0.195 4.195 4 C -0.233 4.233 5 O -0.288 6.288 6 C 0.421 3.579 7 O -0.477 6.477 8 N -0.349 5.349 9 C -0.056 4.056 10 C -0.050 4.050 11 H 0.152 0.848 12 C -0.160 4.160 13 C 0.030 3.970 14 H 0.162 0.838 15 C -0.098 4.098 16 N -0.230 5.230 17 C -0.101 4.101 18 C 0.290 3.710 19 O -0.451 6.451 20 N -0.359 5.359 21 C 0.112 3.888 22 C -0.585 4.585 23 H 0.075 0.925 24 C -0.175 4.175 25 N -0.572 5.572 26 Si 0.762 3.238 27 H -0.190 1.190 28 H -0.201 1.201 29 H -0.182 1.182 30 H 0.075 0.925 31 H 0.111 0.889 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.124 0.876 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.111 0.889 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.093 0.907 41 H 0.111 0.889 42 H 0.134 0.866 43 H 0.136 0.864 44 H 0.079 0.921 45 H 0.095 0.905 46 H 0.142 0.858 47 H 0.241 0.759 48 H 0.031 0.969 49 H 0.031 0.969 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.058 -11.624 -23.472 26.370 hybrid contribution 0.171 1.346 0.064 1.358 sum -2.887 -10.277 -23.407 25.727 Atomic orbital electron populations 1.22457 0.93744 1.03775 1.03484 1.22440 0.94765 0.92519 0.81611 1.21897 1.02288 0.91130 1.04192 1.22443 1.01447 1.02274 0.97116 1.86365 1.71554 1.23350 1.47569 1.17697 0.78536 0.80617 0.81032 1.90875 1.42446 1.71001 1.43384 1.48149 1.52787 1.13407 1.20574 1.23245 0.95322 0.98813 0.88173 1.24849 0.93967 0.93029 0.93138 0.84786 1.24000 0.96355 0.99309 0.96325 1.24290 0.96897 0.78876 0.96953 0.83806 1.23834 0.94434 1.03293 0.88231 1.64854 1.02539 1.28240 1.27360 1.22296 0.98310 0.93424 0.96041 1.20958 0.87456 0.80086 0.82451 1.90589 1.30577 1.55148 1.68789 1.46039 1.25416 1.25666 1.38739 1.19055 0.88886 0.93749 0.87125 1.21313 1.08206 1.07923 1.21046 0.92497 1.25626 1.01438 0.94890 0.95558 1.69984 1.40446 1.19652 1.27107 0.85838 0.79819 0.79956 0.78164 1.18952 1.20068 1.18170 0.92532 0.88852 0.91581 0.91531 0.87606 0.91870 0.91611 0.88877 0.92252 0.91421 0.90732 0.88918 0.86574 0.86350 0.92060 0.90531 0.85841 0.75879 0.96904 0.96888 0.91894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.31 8.37 71.98 0.60 -2.70 16 2 C 0.12 2.39 1.13 -10.79 -0.01 2.38 16 3 C -0.14 -2.05 8.85 71.98 0.64 -1.41 16 4 C -0.18 -3.12 8.37 71.98 0.60 -2.52 16 5 O -0.37 -9.39 9.56 -55.48 -0.53 -9.92 16 6 C 0.67 17.17 7.98 129.79 1.04 18.20 16 7 O -0.59 -16.48 12.23 19.80 0.24 -16.23 16 8 N -0.61 -13.64 2.95 -898.43 -2.65 -16.28 16 9 C 0.07 1.60 6.01 87.17 0.52 2.13 16 10 C 0.06 1.34 4.17 46.85 0.20 1.54 16 11 H 0.13 3.78 6.39 -2.39 -0.02 3.77 16 12 C -0.12 -1.99 6.80 33.46 0.23 -1.76 16 13 C 0.13 2.27 5.23 46.93 0.25 2.52 16 14 H 0.14 2.19 8.06 -2.39 -0.02 2.17 16 15 C 0.03 0.53 6.28 87.08 0.55 1.08 16 16 N -0.51 -11.67 5.16 -844.15 -4.35 -16.03 16 17 C 0.03 0.75 4.66 85.56 0.40 1.15 16 18 C 0.50 17.49 7.49 87.66 0.66 18.15 16 19 O -0.57 -23.35 14.02 -3.04 -0.04 -23.39 16 20 N -0.71 -27.18 5.55 -466.79 -2.59 -29.77 16 21 C 0.24 11.23 4.50 85.63 0.38 11.61 16 22 C -0.55 -29.81 9.83 25.60 0.25 -29.56 16 23 H 0.06 3.27 7.84 -2.91 -0.02 3.25 16 24 C 0.03 1.40 5.47 84.66 0.46 1.86 16 25 N -0.93 -55.50 13.96 21.45 0.30 -55.20 16 26 Si 0.94 43.48 27.47 68.60 1.88 45.36 16 27 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 28 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 29 H -0.26 -11.74 6.54 99.48 0.65 -11.09 16 30 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 31 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 32 H 0.07 1.53 5.88 -2.39 -0.01 1.52 16 33 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.06 1.01 8.14 -2.39 -0.02 1.00 16 36 H 0.06 1.48 5.88 -2.39 -0.01 1.46 16 37 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 38 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.07 1.76 5.22 -2.38 -0.01 1.75 16 40 H 0.07 1.75 8.14 -2.39 -0.02 1.74 16 41 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.06 1.14 7.62 -2.39 -0.02 1.12 16 45 H 0.08 1.81 5.65 -2.39 -0.01 1.80 16 46 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 47 H 0.41 13.83 8.32 -92.71 -0.77 13.06 16 48 H 0.01 0.66 7.20 -2.39 -0.02 0.64 16 49 H 0.01 0.65 7.57 -2.39 -0.02 0.63 16 50 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -69.99 388.43 -0.85 -70.84 By element: Atomic # 1 Polarization: 27.84 SS G_CDS: 0.12 Total: 27.96 kcal Atomic # 6 Polarization: 15.90 SS G_CDS: 6.76 Total: 22.66 kcal Atomic # 7 Polarization: -107.99 SS G_CDS: -9.29 Total: -117.28 kcal Atomic # 8 Polarization: -49.21 SS G_CDS: -0.33 Total: -49.54 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 1.88 Total: 45.36 kcal Total: -69.99 -0.85 -70.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879218337.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.891 kcal (2) G-P(sol) polarization free energy of solvation -69.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds